PI0027576 (gene) Melon (PI 482460) v1

Overview


Name	PI0027576
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr05: 10882215 .. 10882379 (-)
RNA-Seq Expression	PI0027576
Synteny	PI0027576

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAACAATGACGTACCAGATGACGTTGATGAGGGTGACTCTACATACGCCACCACTGGCAGTGAAGATATTCATTACATAGAGACCTCGAGTGCGTGGAGTCAATGGAGGGACGAGCTTGCCGAAAAAATATTCAGTGATTGGGAGTTGCGTAATCAGTAA

mRNA sequence

ATGACGAACAATGACGTACCAGATGACGTTGATGAGGGTGACTCTACATACGCCACCACTGGCAGTGAAGATATTCATTACATAGAGACCTCGAGTGCGTGGAGTCAATGGAGGGACGAGCTTGCCGAAAAAATATTCAGTGATTGGGAGTTGCGTAATCAGTAA

Coding sequence (CDS)

ATGACGAACAATGACGTACCAGATGACGTTGATGAGGGTGACTCTACATACGCCACCACTGGCAGTGAAGATATTCATTACATAGAGACCTCGAGTGCGTGGAGTCAATGGAGGGACGAGCTTGCCGAAAAAATATTCAGTGATTGGGAGTTGCGTAATCAGTAA

Protein sequence

MTNNDVPDDVDEGDSTYATTGSEDIHYIETSSAWSQWRDELAEKIFSDWELRNQ

Homology

[Close]

BLAST of PI0027576 vs. ExPASy TrEMBL
Match: A0A5D3BL48 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00970 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.3e-14
Identity = 39/54 (72.22%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 1   MTNNDVPDDVDEGDSTYATTGSEDIHYIETSSAWSQWRDELAEKIFSDWELRNQ 55
           MTN D+ D++DE DST+ATT ++DIHYIETS+ WSQWRD+LAE++FSDWELRNQ
Sbjct: 161 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 214

[Close]

BLAST of PI0027576 vs. ExPASy TrEMBL
Match: A0A5A7VJX3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G001490 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.3e-14
Identity = 39/54 (72.22%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 1   MTNNDVPDDVDEGDSTYATTGSEDIHYIETSSAWSQWRDELAEKIFSDWELRNQ 55
           MTN D+ D++DE DST+ATT ++DIHYIETS+ WSQWRD+LAE++FSDWELRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 307

[Close]

BLAST of PI0027576 vs. ExPASy TrEMBL
Match: A0A5A7UIM7 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00420 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.4e-14
Identity = 38/54 (70.37%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 1   MTNNDVPDDVDEGDSTYATTGSEDIHYIETSSAWSQWRDELAEKIFSDWELRNQ 55
           MTN D+ D++DE DST+ATT ++DIHYIETS+ WSQWRD+LAE++F+DWELRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTDWELRNQ 307

[Close]

BLAST of PI0027576 vs. ExPASy TrEMBL
Match: A0A5A7VLF4 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G001080 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.4e-14
Identity = 38/54 (70.37%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MTNNDVPDDVDEGDSTYATTGSEDIHYIETSSAWSQWRDELAEKIFSDWELRNQ 55
           MTN D+ DD+DE DST+ATT ++DIHYIETS+ WS+WRD+LAE++FSDWEL NQ
Sbjct: 53  MTNFDIEDDIDEVDSTHATTAADDIHYIETSNEWSRWRDDLAEEMFSDWELSNQ 106

[Close]

BLAST of PI0027576 vs. ExPASy TrEMBL
Match: A0A5D3CKZ1 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00740 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.4e-14
Identity = 38/54 (70.37%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MTNNDVPDDVDEGDSTYATTGSEDIHYIETSSAWSQWRDELAEKIFSDWELRNQ 55
           MTN D+ DD+DE DST+ATT ++DIHYIETS+ WS+WRD+LAE++FSDWEL NQ
Sbjct: 53  MTNFDIEDDIDEVDSTHATTAADDIHYIETSNEWSRWRDDLAEEMFSDWELSNQ 106

[Close]

BLAST of PI0027576 vs. NCBI nr
Match: KAA0067470.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 6.9e-14
Identity = 39/54 (72.22%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 1   MTNNDVPDDVDEGDSTYATTGSEDIHYIETSSAWSQWRDELAEKIFSDWELRNQ 55
           MTN D+ D++DE DST+ATT ++DIHYIETS+ WSQWRD+LAE++FSDWELRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 307

[Close]

BLAST of PI0027576 vs. NCBI nr
Match: TYJ99699.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 6.9e-14
Identity = 39/54 (72.22%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 1   MTNNDVPDDVDEGDSTYATTGSEDIHYIETSSAWSQWRDELAEKIFSDWELRNQ 55
           MTN D+ D++DE DST+ATT ++DIHYIETS+ WSQWRD+LAE++FSDWELRNQ
Sbjct: 161 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 214

[Close]

BLAST of PI0027576 vs. NCBI nr
Match: KAA0054126.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 9.0e-14
Identity = 38/54 (70.37%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 1   MTNNDVPDDVDEGDSTYATTGSEDIHYIETSSAWSQWRDELAEKIFSDWELRNQ 55
           MTN D+ D++DE DST+ATT ++DIHYIETS+ WSQWRD+LAE++F+DWELRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTDWELRNQ 307

[Close]

BLAST of PI0027576 vs. NCBI nr
Match: KAA0067286.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 1.5e-13
Identity = 38/54 (70.37%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MTNNDVPDDVDEGDSTYATTGSEDIHYIETSSAWSQWRDELAEKIFSDWELRNQ 55
           MTN D+ DD+DE DST+ATT ++DIHYIETS+ WS+WRD+LAE++FSDWEL NQ
Sbjct: 53  MTNFDIEDDIDEVDSTHATTAADDIHYIETSNEWSRWRDDLAEEMFSDWELSNQ 106

[Close]

BLAST of PI0027576 vs. NCBI nr
Match: TYK10899.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 1.5e-13
Identity = 38/54 (70.37%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MTNNDVPDDVDEGDSTYATTGSEDIHYIETSSAWSQWRDELAEKIFSDWELRNQ 55
           MTN D+ DD+DE DST+ATT ++DIHYIETS+ WS+WRD+LAE++FSDWEL NQ
Sbjct: 53  MTNFDIEDDIDEVDSTHATTAADDIHYIETSNEWSRWRDDLAEEMFSDWELSNQ 106

The following BLAST results are available for this feature:

BLAST of PI0027576 vs.


Match Name	E-value	Identity	Description

BLAST of PI0027576 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BL48	3.3e-14	72.22	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7VJX3	3.3e-14	72.22	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UIM7	4.4e-14	70.37	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7VLF4	7.4e-14	70.37	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3CKZ1	7.4e-14	70.37	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of PI0027576 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067470.1	6.9e-14	72.22	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ99699.1	6.9e-14	72.22	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0054126.1	9.0e-14	70.37	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0067286.1	1.5e-13	70.37	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
TYK10899.1	1.5e-13	70.37	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]

BLAST of PI0027576 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0027576.1	PI0027576.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding