PI0011294 (gene) Melon (PI 482460) v1

Overview


Name	PI0011294
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Transcription initiation factor IIA subunit 2
Location	chr03: 26022049 .. 26027691 (+)
RNA-Seq Expression	PI0011294
Synteny	PI0011294

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGACAAAACACATTGAAGGCTATTTTTGACGATTTCCTAAGAAAACCCTAACAATATTCCTTCTCCCTCTCTTTTTCGTGGACACCCGGCCTTGAAATCCTCTCTCCGACAACGATTCGCAGCGACTACTAGTGACTGAGCGACGGTAGAATCTCCCTCCGGCATCCCATTTCTGTCTTCAGCAGCGTGCTTCTTCATCAACCACTCGAGATTTGGAGTTCCAGCGACGGCGGCGCTTACATCCTTCAGTGGCGGTGACCATCGACACCCTGGAAACCCACGCGGTCTGAACACCCTGGAAGCGAAGCTTTCCTCCCTTTCGGCAAGGTTAGACACTTACCCATTGTTTCAAGGTTGGATTTAAGTTACCCACTTCTTGAGGGATCGTTTTATATGGGATTGAGCATATTCGAACACCAACAAACAAGGATTTGGGTTGTTTTGGGTAAGAATCAGCGGGTAAACACTCTAAACTTATTTTCTAACTAGTTTAAGGTTCTTTAGATTAGTCTCTAATAGTTGGAAGTCCTTTTGTAGGTTTGAAATAGTTTAGGAACTATTATATCACCTTGCAGCAAGGACTAAGTCTGTCTTGGTGAGTTTTAGCTGTTAGAAATCCGTTTAGAGCCTTTTCAATTGTATTTGTGTAGATGTTTGAATATATGGATGATTAATGTTAGAGAACACAACACATAAGCATAAAACATATCATAGATTAGTATTTGATGGTCTTGGTTTAGTTAGTCGATACTGTGAGTTTAGAATGGAAAGTATTAGAATTATTGAGAATGTCGATGGCCCTTTGTGGAGTCGGTCAGTTGGGCCGACGTTGACTGAGAGATCGGTGATCTTGGATAATATCAGTCGGAGCCGGAAAAGACGTCGGTGGCCTTGGATATATCAGTTAGGGTTGATAGAGATCGTTGGTAGCCTTGGATGAAGTCAACAAGGTTGATGGAGAGTGTTGATGATAATGGATAAAGTCATGTGGTGCGCCTGGGCACGATTAGTTGGGGTCAACCTGTGTGAGGTATTCATTTTCATTCAAAAAAATTTGTGAGAGTTAAGCTGGAATGTTTACTGAATTTGATTAGTTTGATTTCAAACTATGTATGATATGATGATCTAATTCATGAGGTTAGCATGATGTGATTGACATTTAAAGTTGTATGTATGTTGTTTGGTGACTCTTCAGGTGTGGGCTAGGGCTACTTACCAGTACGAATGTCAAGTATGTATTAACCCCCCACAACAAGGTGTTGACGATTGTTGCGACCTTGGTTATAGTGAAAAGGGAATACGGGAAAGATTGACTATTGGGCACATGTCATTGTTTTGGTCTCTTTTCTTTATAAGATAATTTCATTCGAACTTTTGATTATTGAAACTTTGTTTGAGTCAAGTAGGTTTTTTCAGTTGGCTTTGATTTGAGAGTTGTAATTGATTTTAGTGGTTTATGTTGTTTGAGTTTGACATTAGTCTTGGTTTGTTTTGTTGAATTTGATTAAATTGATGCTTTGCATATCAATTTTTTTGAAATTTATATTGAATTTCAAATTGTTTAATAGGTGTTTTAAATTTGGTAGTATTTACATTTACATCGTTATGTCCCTGAAATTTTTCTAATGTATTAGAGATAGTACAGTTAGTTACATGTCAAATCTTGGTAATGTTTCCTTGGTTGGAGTTGAAATTTGGGGTTAGAAATTTTCTTTATTATTATTATCATTATTATTTTATCCTTCTTTTTTAAATTGATCTCTTGCTTTAATGCCATATTTTGCTAGCTTTCTTGAATTCCGACGCTATGTTCCAAAATTTTCTCATTTTTTTTTCAATTTTGCATTGTGTATTTTTCAACTAAAGATGTAGAGGATTACAGAAACAAGTTGAAGGAAGGTATTATCCTCAAGCTGGATTTAAAAAATGCTATGATCTTGTCGATTGAGACTTTTTGGATAAGTTGTTGGATGAGTAAGGATTTGGGTATAAATGGAGAATGTGGTTTGGGGTTGCATTAGGAATGTGAACTATTCCATCCTCATTAATGGTATCCCTAAGGGATCTATTCAGGCTTCTAGAGGCTTAAGGCAAGGGGATCATCAATCTCCCTTCTCGTTCTTAATTGTGGTGGACGTTTTAAGTCGTCTCATTTTCAAGGGAGTGGAGGGAAATATAGCCTTTTAGGGTTGGTTCCGATGAGGTTGCTTTGTCTCCTTATTTAAAGCTTCTAGCTCTGTCTGCAAAAGTATCGAGAAGCTTACGAGAGATTTTCTCTAGGAAGGAATGGATGAGGAGAAGAGATCTCATCTGGTTAGCTGGCGGGTAAATGGGTGCCCTGTGAATCAGGGAGGGTTCGAAATCGTTAACTTAAGGATGTGTAACAAAGCCTTGTTGGCTAAATGGCTTTGGCGTTTTGTCCTTGAACCTAAATCTTTGTGGCATAGGATCATTGTGAGCAAGCATGGCTTTGATCCCTTTCAGTGGGTGGCTAAAGGGATTATAGGCACACATCGTACTCCCTGGAAGGACATCTCGCTTGAGGTCCTTTCGTTCTATCCTTGGGCTAGATGCATTGTGGGAGATGGTAAGGAGATTTTTTTTTTTTTTGGAAGATCAGTGGGTTGGGGATAGCCCCCTTTGCTCTGTCTATCCTCATCTTTATTATCTATCATTTCTTAAAAATCATCCGATCTCTACCTTTTTGTTTTGGGCCGGAAGTTCGGTGTCTTTTTCTATCGGGTTCCGTCGTCACTTATCCAATAGGGAGACGGCGGAAGTGACCTCCTTTCTTTGCTTGATGAGTGTGACTTTAGGGAGGGGAGGAGGGATGTTTGTGTTTGGAAGCCCAATCCTTTGGAAGGCTTCTCTTGTAAAGCTTTCTTCAGATTGTTGTTAGACCCCTCCCATGGTTGCGTGTTGGTTTTTGGCGAGGTTTGGAGGATAAATATTCCAAAGAAAATCTAGTTTTTTATCTAGCAGGTTTTGTTAGGTTGCGTGAACACCTTGGATGGGCTTGCTAAGAAGTTGCCTAGCTTATGGGACCGTCCTGTTGTATTCTTTGTCGGAAGGCGGAGGAAAACCTGAACCACATGCTTTGGGACTATTAATATGCGAGCTTTGTGTGGTCTTGTTTCTTTCAGAAGTTTGGTTTTCAGATTGCTGGTCAGAGAAAGATCTGTGCCATGATCGAGGAGTTTATCTTGTATTGTCTGCCTTTCAGAGAGAGAGATCGGTTTTTGTTGCTTGCCAAGGTGTATGCCGTAGTTTGGGGTATTTGGGGTGAAAGGAACAAGAGAGTTTCTAGAGGTTTAGAGAAGGACCCTTCTAAAGTTTGGTCCTTAGTGAGGTCCCATGTTTCTTTGGGCTTCTGGTTGAAGGCTTTTTTTGTAATTATTCAATTGGCAACATTTTATTGATTTGGAAGTCTTTCTTGTAGAAAGCTTGTTTTTTGGTGGGCTTGGTTTTTTGTCTGCCCTTGTATTCTTTTCATTCTTTTTCAATGAAAGTTGTCTATCTTAGCTAAAGAGCTTCAATATTTTGCAGATCTTGATTTCTGAAGAAGAATGGCAACCTTTGAACTCTACCGCAGATCAACAATCGGCATGTGTTTGACTGAAACTTTGGATGAAATGGTTCAGAACGGTACTCTTAGTCCCGAGCTTGCTATTCAGGTTCTTGTCCAGTTCGATAAGGTATAGCCAAAGCTGGAGATGTGGTATATTTTTTATTTGTGTTTAGAATTTAGGTCTTGTTTGATTTAATTTGTTACTGCTTTTGCAGTCGATGACTGAGGCTCTGGAATCACAAGTGAAAAGCAAGGTGACTATCAAGGTATCTTTTTTTGGTTTAAGAATTTGACAATCTTTAATGCTATAAATTTATGTTGCTAAATAAAGTCAACGTTATAAAATTGAAACATATTTTTACTGATAAGAGGAATCAATTGTGTTTGCCTTGTTCGTAGATTGCTCTGTTTGTGCTCTAGTGCATGGCTAGACCTGAGCCAAATTATTTTGTCAATAACACATTACACATTTATATGTCAAATGTATATGTTAGGAACCAAGGTAGTATGGGATGACTTTGTTTCACATTGATGAGAATAAGATGATCAATGTAAGTGGCTTGGCTCTCCCATCCCAATAGCTAACTTTTGGTGTGTGGTTCCTCAAGGTGCTTTAAGTACCTAACAATGGTATCACAATTGGTTGTCAACATTTTGGAGTAGAGTCGCCTGAGGGTTCTGACTGGGTGTGGCTGAGTGAAGTACTACCAGAGTAGCTGCTTGGATGTTGGCTTTTCGGGGATGGGGTAGTGTGAGATGCTGTTATCCCACAATGGTTAGAATGGAATGACCAATGTGATACTTAAGTGGCTTGACTCTTCCACCCAATAGCTGACTTTTGGGATGTGGTTCTCCAAGGTACTTAAGTACCTATCAGTATAGTGGATATTCTCCCAGGTCTTTTGGTTGCCATTTAGTGAATAGAACCATGATATAGGAATGAAACAGTGTACGGTATAAAACCATTTGCATTGAGAGATGGTAGTTTCTTTGGTGGAACATTTGATTTCTATGTGATTCGGTTGATTTTGTTCATTCTATTCCTTGCTTTGTTTCTTGATTTTAGAAACGTTTTTCCCTATGAAATATTGCTCCTTGGATTAGTTTCTCTGGAATAAACTTTGTAGTTCTTTGTGTTTTTGGAATCTGGGGACAGTCATCCCTGTCGTTAGGGAGGTGGCCATATCAGATTCTACAATGAGTCTTCGTGAGTCCACTACTATTGCTTTCAAGTTCTATGTTCAATCCTGTGGGTGTTGGATTTTCTAACGATACTCAGTTGAAAGTTCATCATACATACACACACAGATTGTACGAGGACTATTGCTCTAAAAGAAATTATGAAATCATAATCACACAACAATGGTTATTAGGAGTTGCATAGTTAACATGCATGACATTTTGTTTGTCTTGAACACTTTCTTCCTGGTGATTTCTAAATTTCTTTGTCCTCGTACTGTCTTGTCATGCAACAGGGACATCTACACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCGTCGTTTAAAAATGAGGATTCCAGTGAGGTTGTTGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTTTCACAATAAGCTTTCATACATCAGGAATATTCGATGAAATTTACATAGTTATTTGCTGATGATGGAGCGAAGAATAGTCACGGTGAGGAGGAATGGCCATCCAGGAAGAGATTCAAACGTGATTCTGTAAAGTCATCAACCTGAACAGCAAAAAGTTGCATTGACGATACATTGACTGTAATTGGCTTCTAAAGTTGATTACATAACAATTACACGACCCTTCTTCCAGTTTAACGACAATAAAACATGATGTATGTTTCGATACTGTGCTATTAATTTTCTTTTGTACTATTTCCTTTGAACCTACTTTCTGTACATTAGAATTCAAATTACCACTTCGAAAGGAATAAACTTGATTGAAACTATTTTCTTATTAGTCATTATTTCAGTATCATTGATGTTAGGTTTGGGAGCAAACATTATTTGAATAATAAGAAAGAATCAAACATTTTTCACATTTCTTTTATA

mRNA sequence

AGACAAAACACATTGAAGGCTATTTTTGACGATTTCCTAAGAAAACCCTAACAATATTCCTTCTCCCTCTCTTTTTCGTGGACACCCGGCCTTGAAATCCTCTCTCCGACAACGATTCGCAGCGACTACTAGTGACTGAGCGACGGTAGAATCTCCCTCCGGCATCCCATTTCTGTCTTCAGCAGCGTGCTTCTTCATCAACCACTCGAGATTTGGAGTTCCAGCGACGGCGGCGCTTACATCCTTCAGTGGCGGTGACCATCGACACCCTGGAAACCCACGCGGTCTGAACACCCTGGAAGCGAAGCTTTCCTCCCTTTCGGCAAGATCTTGATTTCTGAAGAAGAATGGCAACCTTTGAACTCTACCGCAGATCAACAATCGGCATGTGTTTGACTGAAACTTTGGATGAAATGGTTCAGAACGGTACTCTTAGTCCCGAGCTTGCTATTCAGGTTCTTGTCCAGTTCGATAAGTCGATGACTGAGGCTCTGGAATCACAAGTGAAAAGCAAGGTGACTATCAAGGGACATCTACACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCGTCGTTTAAAAATGAGGATTCCAGTGAGGTTGTTGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTTTCACAATAAGCTTTCATACATCAGGAATATTCGATGAAATTTACATAGTTATTTGCTGATGATGGAGCGAAGAATAGTCACGGTGAGGAGGAATGGCCATCCAGGAAGAGATTCAAACGTGATTCTGTAAAGTCATCAACCTGAACAGCAAAAAGTTGCATTGACGATACATTGACTGTAATTGGCTTCTAAAGTTGATTACATAACAATTACACGACCCTTCTTCCAGTTTAACGACAATAAAACATGATGTATGTTTCGATACTGTGCTATTAATTTTCTTTTGTACTATTTCCTTTGAACCTACTTTCTGTACATTAGAATTCAAATTACCACTTCGAAAGGAATAAACTTGATTGAAACTATTTTCTTATTAGTCATTATTTCAGTATCATTGATGTTAGGTTTGGGAGCAAACATTATTTGAATAATAAGAAAGAATCAAACATTTTTCACATTTCTTTTATA

Coding sequence (CDS)

ATGGCAACCTTTGAACTCTACCGCAGATCAACAATCGGCATGTGTTTGACTGAAACTTTGGATGAAATGGTTCAGAACGGTACTCTTAGTCCCGAGCTTGCTATTCAGGTTCTTGTCCAGTTCGATAAGTCGATGACTGAGGCTCTGGAATCACAAGTGAAAAGCAAGGTGACTATCAAGGGACATCTACACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCGTCGTTTAAAAATGAGGATTCCAGTGAGGTTGTTGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTTTCACAATAA

Protein sequence

MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACDSKLLSQ

Homology

[Close]

BLAST of PI0011294 vs. ExPASy Swiss-Prot
Match: A2XZI2 (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica OX=39946 GN=TFIIAy PE=3 SV=2)

HSP 1 Score: 193.4 bits (490), Expect = 1.3e-48
Identity = 94/106 (88.68%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKV+IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFIL +ASFKNE+++E VG++KIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106

[Close]

BLAST of PI0011294 vs. ExPASy Swiss-Prot
Match: Q0DLD3 (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TFIIAy PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.3e-48
Identity = 94/106 (88.68%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKV+IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFIL +ASFKNE+++E VG++KIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106

[Close]

BLAST of PI0011294 vs. ExPASy Swiss-Prot
Match: Q39236 (Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana OX=3702 GN=TFIIA-S PE=3 SV=2)

HSP 1 Score: 191.8 bits (486), Expect = 3.9e-48
Identity = 94/106 (88.68%), Postives = 101/106 (95.28%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV+IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA FK++D  E V R+KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

[Close]

BLAST of PI0011294 vs. ExPASy Swiss-Prot
Match: O74948 (Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=toa2 PE=3 SV=2)

HSP 1 Score: 121.3 bits (303), Expect = 6.5e-27
Identity = 53/99 (53.54%), Postives = 79/99 (79.80%), Query Frame = 0


Query: 4   FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHL 63
           +ELYRRS+IG+ LT+ LD+++  G +SP+LA++VL  FDKSMTEAL  +V+S++T KGHL
Sbjct: 5   YELYRRSSIGISLTDALDDLISQGKISPQLAMKVLFNFDKSMTEALAEKVRSRLTFKGHL 64

Query: 64  HTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACDSK 103
            TYRFCD VWTFI+++ SF+ ++ +    +I+IVAC ++
Sbjct: 65  DTYRFCDEVWTFIIKNPSFRFDNETVTSNKIRIVACATR 103

[Close]

BLAST of PI0011294 vs. ExPASy Swiss-Prot
Match: Q54ND1 (Transcription initiation factor IIA subunit 2 OS=Dictyostelium discoideum OX=44689 GN=gtf2a2 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.6e-25
Identity = 57/101 (56.44%), Postives = 77/101 (76.24%), Query Frame = 0


Query: 4   FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHL 63
           +ELYR+STIG  LT+TL+E++ N  +S  L  ++L QFDK++ EAL + VK+K T KG L
Sbjct: 8   YELYRKSTIGEALTDTLEELLINQYISNSLYQKILTQFDKTINEALSNTVKAKTTFKGSL 67

Query: 64  HTYRFCDNVWTFILQDASFKNEDSSEV-VGRIKIVACDSKL 104
           HTYRFCD+VWTFIL++A FK E +  V V R+KIVACD+ +
Sbjct: 68  HTYRFCDSVWTFILENAQFKTEANEIVKVDRVKIVACDANV 108

[Close]

BLAST of PI0011294 vs. ExPASy TrEMBL
Match: A0A1S3B2F6 (Transcription initiation factor IIA subunit 2 OS=Cucumis melo OX=3656 GN=LOC103485407 PE=3 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.1e-50
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKVTIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDASFKNEDSSE VGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 106

[Close]

BLAST of PI0011294 vs. ExPASy TrEMBL
Match: A0A0A0LMF8 (Transcription initiation factor IIA subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_2G401990 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.5e-50
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVT+K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDASFKNEDSSE VGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 106

[Close]

BLAST of PI0011294 vs. ExPASy TrEMBL
Match: A0A0A0LQ01 (Transcription initiation factor IIA subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_2G401490 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.9e-50
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDASFKNEDS+EVVGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSKLLSQ 106

[Close]

BLAST of PI0011294 vs. ExPASy TrEMBL
Match: A0A1S3B2V9 (Transcription initiation factor IIA subunit 2 OS=Cucumis melo OX=3656 GN=LOC103485408 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.9e-50
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDASFKNEDS+EVVGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSKLLSQ 106

[Close]

BLAST of PI0011294 vs. ExPASy TrEMBL
Match: A0A6J1J100 (Transcription initiation factor IIA subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111480333 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 7.4e-50
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA+FKNEDS E VGRIKIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]

BLAST of PI0011294 vs. NCBI nr
Match: XP_008441202.1 (PREDICTED: transcription initiation factor IIA subunit 2 [Cucumis melo] >XP_008441203.1 PREDICTED: transcription initiation factor IIA subunit 2 [Cucumis melo])

HSP 1 Score: 208.8 bits (530), Expect = 2.4e-50
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKVTIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDASFKNEDSSE VGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 106

[Close]

BLAST of PI0011294 vs. NCBI nr
Match: XP_004138655.1 (transcription initiation factor IIA subunit 2 [Cucumis sativus] >XP_011649891.1 transcription initiation factor IIA subunit 2 [Cucumis sativus] >KGN63090.1 hypothetical protein Csa_022522 [Cucumis sativus])

HSP 1 Score: 208.4 bits (529), Expect = 3.1e-50
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVT+K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDASFKNEDSSE VGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 106

[Close]

BLAST of PI0011294 vs. NCBI nr
Match: XP_038897043.1 (transcription initiation factor IIA subunit 2 [Benincasa hispida])

HSP 1 Score: 208.0 bits (528), Expect = 4.0e-50
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA+FKNEDSSE VGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSSESVGRIKIVACDSKLLSQ 106

[Close]

BLAST of PI0011294 vs. NCBI nr
Match: XP_004138656.1 (transcription initiation factor IIA subunit 2 [Cucumis sativus] >XP_008441205.1 PREDICTED: transcription initiation factor IIA subunit 2-like [Cucumis melo] >XP_031736663.1 transcription initiation factor IIA subunit 2 [Cucumis sativus] >KGN63089.1 hypothetical protein Csa_022262 [Cucumis sativus])

HSP 1 Score: 208.0 bits (528), Expect = 4.0e-50
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDASFKNEDS+EVVGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSKLLSQ 106

[Close]

BLAST of PI0011294 vs. NCBI nr
Match: XP_022941425.1 (transcription initiation factor IIA subunit 2-like [Cucurbita moschata] >XP_022981079.1 transcription initiation factor IIA subunit 2-like [Cucurbita maxima] >XP_023525811.1 transcription initiation factor IIA subunit 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.1 bits (523), Expect = 1.5e-49
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA+FKNEDS E VGRIKIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]

BLAST of PI0011294 vs. TAIR 10
Match: AT4G24440.1 (transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) )

HSP 1 Score: 191.8 bits (486), Expect = 2.8e-49
Identity = 94/106 (88.68%), Postives = 101/106 (95.28%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV+IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA FK++D  E V R+KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

[Close]

BLAST of PI0011294 vs. TAIR 10
Match: AT4G24440.2 (transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) )

HSP 1 Score: 191.8 bits (486), Expect = 2.8e-49
Identity = 94/106 (88.68%), Postives = 101/106 (95.28%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV+IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSEVVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA FK++D  E V R+KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

The following BLAST results are available for this feature:

BLAST of PI0011294 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2XZI2	1.3e-48	88.68	Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica OX=3...	[more]
Q0DLD3	1.3e-48	88.68	Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica OX...	[more]
Q39236	3.9e-48	88.68	Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana OX=3702 GN...	[more]
O74948	6.5e-27	53.54	Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (stra...	[more]
Q54ND1	1.6e-25	56.44	Transcription initiation factor IIA subunit 2 OS=Dictyostelium discoideum OX=446...	[more]

BLAST of PI0011294 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B2F6	1.1e-50	98.11	Transcription initiation factor IIA subunit 2 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A0A0LMF8	1.5e-50	98.11	Transcription initiation factor IIA subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_...	[more]
A0A0A0LQ01	1.9e-50	98.11	Transcription initiation factor IIA subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_...	[more]
A0A1S3B2V9	1.9e-50	98.11	Transcription initiation factor IIA subunit 2 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1J100	7.4e-50	96.23	Transcription initiation factor IIA subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of PI0011294 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441202.1	2.4e-50	98.11	PREDICTED: transcription initiation factor IIA subunit 2 [Cucumis melo] >XP_0084...	[more]
XP_004138655.1	3.1e-50	98.11	transcription initiation factor IIA subunit 2 [Cucumis sativus] >XP_011649891.1 ...	[more]
XP_038897043.1	4.0e-50	98.11	transcription initiation factor IIA subunit 2 [Benincasa hispida]	[more]
XP_004138656.1	4.0e-50	98.11	transcription initiation factor IIA subunit 2 [Cucumis sativus] >XP_008441205.1 ...	[more]
XP_022941425.1	1.5e-49	96.23	transcription initiation factor IIA subunit 2-like [Cucurbita moschata] >XP_0229...	[more]

BLAST of PI0011294 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24440.1	2.8e-49	88.68	transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)	[more]
AT4G24440.2	2.8e-49	88.68	transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003194	Transcription initiation factor IIA, gamma subunit	PIRSF	PIRSF009415	TFIIA_gamma_hum	coord: 1..106 e-value: 6.0E-49 score: 162.7
IPR003194	Transcription initiation factor IIA, gamma subunit	PANTHER	PTHR10966	TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2	coord: 1..106
IPR009083	Transcription factor IIA, alpha-helical domain	GENE3D	1.10.287.190		coord: 3..54 e-value: 3.1E-24 score: 86.6
IPR009088	Transcription factor IIA, beta-barrel	GENE3D	2.30.18.10		coord: 55..105 e-value: 3.8E-23 score: 83.0
IPR009088	Transcription factor IIA, beta-barrel	SUPERFAMILY	50784	Transcription factor IIA (TFIIA), beta-barrel domain	coord: 52..102
IPR015872	Transcription initiation factor IIA, gamma subunit, N-terminal	PFAM	PF02268	TFIIA_gamma_N	coord: 4..49 e-value: 1.1E-22 score: 79.8
IPR015872	Transcription initiation factor IIA, gamma subunit, N-terminal	CDD	cd10145	TFIIA_gamma_N	coord: 4..49 e-value: 1.22968E-22 score: 81.0728
IPR015871	Transcription initiation factor IIA, gamma subunit, C-terminal	PFAM	PF02751	TFIIA_gamma_C	coord: 60..101 e-value: 6.5E-21 score: 74.2
IPR015871	Transcription initiation factor IIA, gamma subunit, C-terminal	CDD	cd10014	TFIIA_gamma_C	coord: 57..102 e-value: 1.36686E-22 score: 80.7547
None	No IPR available	PANTHER	PTHR10966:SF8	TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2	coord: 1..106
None	No IPR available	SUPERFAMILY	47396	Transcription factor IIA (TFIIA), alpha-helical domain	coord: 4..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0011294.1	PI0011294.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051123	RNA polymerase II preinitiation complex assembly
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
cellular_component	GO:0005672	transcription factor TFIIA complex
molecular_function	GO:0016251	RNA polymerase II general transcription initiation factor activity
molecular_function	GO:0017025	TBP-class protein binding