PI0016034 (gene) Melon (PI 482460) v1

Overview


Name	PI0016034
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	SWIM-type domain-containing protein
Location	chr03: 17494462 .. 17494730 (-)
RNA-Seq Expression	PI0016034
Synteny	PI0016034

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGCTACTTATTGTCCAACTACAATCGATGTTATGACGGTCGCTTCCATCCGATACAACATCCAGACTACTGGCCAGAGTTATCATTCACTGAAGTTCGCCCAAATACGAACTTACTTAGAGAACCCGGTCGACCCAGAACTACGAGGATCCAGAATGAAATGGATTGGAAGGAGTCCGGTCAATCAGTAAGATGCACGATATGTAAAGCGGAAGGACACAACAGACGTACTTGTCCACAACGTGCATCTTCTTCAAGACATTGA

mRNA sequence

ATGACTGCTACTTATTACTACTGGCCAGAGTTATCATTCACTGAAGTTCGCCCAAATACGAACTTACTTAGAGAACCCGGTCGACCCAGAACTACGAGGATCCAGAATGAAATGGATTGGAAGGAGTCCGGTCAATCAGTAAGATGCACGATATGTAAAGCGGAAGGACACAACAGACGTACTTGTCCACAACGTGCATCTTCTTCAAGACATTGA

Coding sequence (CDS)

ATGACTGCTACTTATTACTACTGGCCAGAGTTATCATTCACTGAAGTTCGCCCAAATACGAACTTACTTAGAGAACCCGGTCGACCCAGAACTACGAGGATCCAGAATGAAATGGATTGGAAGGAGTCCGGTCAATCAGTAAGATGCACGATATGTAAAGCGGAAGGACACAACAGACGTACTTGTCCACAACGTGCATCTTCTTCAAGACATTGA

Protein sequence

MTATYYYWPELSFTEVRPNTNLLREPGRPRTTRIQNEMDWKESGQSVRCTICKAEGHNRRTCPQRASSSRH

Homology

[Close]

BLAST of PI0016034 vs. ExPASy TrEMBL
Match: A0A0A0KT57 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G582740 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 8.5e-26
Identity = 59/72 (81.94%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1  MTATYYYWPELSFTEVRPNTNLLREPGRPRTTRIQNEMDWKESGQSVRCTICKAEGHNRR 60
          M AT+YYW E+SFTEVRPN +LL+EPGRPRTTRIQNEMDWKES QS+RCT+ K EGHNRR
Sbjct: 1  MNATFYYWLEISFTEVRPNADLLKEPGRPRTTRIQNEMDWKESSQSLRCTVYKVEGHNRR 60

Query: 61 TCPQRA-SSSRH 72
          TCPQRA SSSRH
Sbjct: 61 TCPQRASSSSRH 72

[Close]

BLAST of PI0016034 vs. ExPASy TrEMBL
Match: A0A5D3BS92 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00230 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.2e-25
Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 7   YWPELSFTEVRPNTNLLREPGRPRTTRIQNEMDWKESGQSVRCTICKAEGHNRRTCPQRA 66
           YWPELSFTEVRPN +LL+ PGRPRTTRI NEMDWKESGQS+RCTICK EGHNRRTCPQRA
Sbjct: 606 YWPELSFTEVRPNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 665

Query: 67  -SSSRH 72
            SSSRH
Sbjct: 666 SSSSRH 671

[Close]

BLAST of PI0016034 vs. ExPASy TrEMBL
Match: A0A5A7TN56 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00290 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.2e-25
Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 7   YWPELSFTEVRPNTNLLREPGRPRTTRIQNEMDWKESGQSVRCTICKAEGHNRRTCPQRA 66
           YWPELSFTEVRPN +LL+ PGRPRTTRI NEMDWKESGQS+RCTICK EGHNRRTCPQRA
Sbjct: 606 YWPELSFTEVRPNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 665

Query: 67  -SSSRH 72
            SSSRH
Sbjct: 666 SSSSRH 671

[Close]

BLAST of PI0016034 vs. ExPASy TrEMBL
Match: A0A5A7SW50 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G001280 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 9.4e-25
Identity = 57/66 (86.36%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 7   YWPELSFTEVRPNTNLLREPGRPRTTRIQNEMDWKESGQSVRCTICKAEGHNRRTCPQRA 66
           YWPELSFTE+RPN +LL+ PGRPRTTRI NEMDWKESGQS+RCTICK EGHNRRTCPQRA
Sbjct: 165 YWPELSFTEIRPNADLLKGPGRPRTTRIFNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 224

Query: 67  -SSSRH 72
            SSSRH
Sbjct: 225 SSSSRH 230

[Close]

BLAST of PI0016034 vs. ExPASy TrEMBL
Match: A0A5A7VDU8 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00030 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.7e-24
Identity = 57/66 (86.36%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 7   YWPELSFTEVRPNTNLLREPGRPRTTRIQNEMDWKESGQSVRCTICKAEGHNRRTCPQRA 66
           YWPELSFTEVRPN NLL+ P RPRTTRI NEMDWKESGQS+RCTICK EGHNRR CPQRA
Sbjct: 200 YWPELSFTEVRPNANLLKGPDRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRICPQRA 259

Query: 67  -SSSRH 72
            SSSRH
Sbjct: 260 SSSSRH 265

[Close]

BLAST of PI0016034 vs. NCBI nr
Match: XP_031737534.1 (uncharacterized protein LOC116402427 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 7.9e-26
Identity = 56/65 (86.15%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 7   YWPELSFTEVRPNTNLLREPGRPRTTRIQNEMDWKESGQSVRCTICKAEGHNRRTCPQRA 66
           YWPE+SFTEVRPN +LL+ PGRPRTTRIQNEMDWKES QS+RCTICK EGHNRRTCP+RA
Sbjct: 569 YWPEISFTEVRPNADLLKGPGRPRTTRIQNEMDWKESSQSIRCTICKVEGHNRRTCPERA 628

Query: 67  SSSRH 72
           SSSRH
Sbjct: 629 SSSRH 633

[Close]

BLAST of PI0016034 vs. NCBI nr
Match: KGN51592.1 (hypothetical protein Csa_008873 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 1.8e-25
Identity = 59/72 (81.94%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1  MTATYYYWPELSFTEVRPNTNLLREPGRPRTTRIQNEMDWKESGQSVRCTICKAEGHNRR 60
          M AT+YYW E+SFTEVRPN +LL+EPGRPRTTRIQNEMDWKES QS+RCT+ K EGHNRR
Sbjct: 1  MNATFYYWLEISFTEVRPNADLLKEPGRPRTTRIQNEMDWKESSQSLRCTVYKVEGHNRR 60

Query: 61 TCPQRA-SSSRH 72
          TCPQRA SSSRH
Sbjct: 61 TCPQRASSSSRH 72

[Close]

BLAST of PI0016034 vs. NCBI nr
Match: KAA0044308.1 (uncharacterized protein E6C27_scaffold46G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 123.6 bits (309), Expect = 6.7e-25
Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 7   YWPELSFTEVRPNTNLLREPGRPRTTRIQNEMDWKESGQSVRCTICKAEGHNRRTCPQRA 66
           YWPELSFTEVRPN +LL+ PGRPRTTRI NEMDWKESGQS+RCTICK EGHNRRTCPQRA
Sbjct: 606 YWPELSFTEVRPNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 665

Query: 67  -SSSRH 72
            SSSRH
Sbjct: 666 SSSSRH 671

[Close]

BLAST of PI0016034 vs. NCBI nr
Match: TYK02543.1 (uncharacterized protein E5676_scaffold201G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 123.6 bits (309), Expect = 6.7e-25
Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 7   YWPELSFTEVRPNTNLLREPGRPRTTRIQNEMDWKESGQSVRCTICKAEGHNRRTCPQRA 66
           YWPELSFTEVRPN +LL+ PGRPRTTRI NEMDWKESGQS+RCTICK EGHNRRTCPQRA
Sbjct: 606 YWPELSFTEVRPNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 665

Query: 67  -SSSRH 72
            SSSRH
Sbjct: 666 SSSSRH 671

[Close]

BLAST of PI0016034 vs. NCBI nr
Match: KAA0033661.1 (hypothetical protein E6C27_scaffold239G001280 [Cucumis melo var. makuwa])

HSP 1 Score: 122.1 bits (305), Expect = 1.9e-24
Identity = 57/66 (86.36%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 7   YWPELSFTEVRPNTNLLREPGRPRTTRIQNEMDWKESGQSVRCTICKAEGHNRRTCPQRA 66
           YWPELSFTE+RPN +LL+ PGRPRTTRI NEMDWKESGQS+RCTICK EGHNRRTCPQRA
Sbjct: 165 YWPELSFTEIRPNADLLKGPGRPRTTRIFNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 224

Query: 67  -SSSRH 72
            SSSRH
Sbjct: 225 SSSSRH 230

The following BLAST results are available for this feature:

BLAST of PI0016034 vs.


Match Name	E-value	Identity	Description

BLAST of PI0016034 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT57	8.5e-26	81.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G582740 PE=4 SV=1	[more]
A0A5D3BS92	3.2e-25	87.88	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7TN56	3.2e-25	87.88	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5A7SW50	9.4e-25	86.36	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5A7VDU8	2.7e-24	86.36	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]

BLAST of PI0016034 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031737534.1	7.9e-26	86.15	uncharacterized protein LOC116402427 [Cucumis sativus]	[more]
KGN51592.1	1.8e-25	81.94	hypothetical protein Csa_008873 [Cucumis sativus]	[more]
KAA0044308.1	6.7e-25	87.88	uncharacterized protein E6C27_scaffold46G00290 [Cucumis melo var. makuwa]	[more]
TYK02543.1	6.7e-25	87.88	uncharacterized protein E5676_scaffold201G00230 [Cucumis melo var. makuwa]	[more]
KAA0033661.1	1.9e-24	86.36	hypothetical protein E6C27_scaffold239G001280 [Cucumis melo var. makuwa]	[more]

BLAST of PI0016034 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	4.10.60.10		coord: 19..71 e-value: 3.3E-5 score: 25.5
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 38..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0016034.1	PI0016034.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding