PI0006235 (gene) Melon (PI 482460) v1

Overview
NamePI0006235
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionIntegrase core domain containing protein
Locationchr08: 4984961 .. 4985872 (-)
RNA-Seq ExpressionPI0006235
SyntenyPI0006235
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGGGGTTTGCAGATCCCAAGAAAAAGGACAGAGTATTAAGGAAAAAACCAAATACAATCAGCACAAGGAAAAGTCAATAATCCAGTCAGCAGTACAATCAACACAATGCATAAATACAATTCACCACGGTCAGCATTTGGATGAAAACAATCGAGAATCTTCCATTGGTTAGGAATTCTGTTATTCCTCTTCCTATCATTTTCTGCCATGTGTAAAAGACTGTAAATTACTTTTCTATTATTCTTTATTCTTTGGTATCTTTCGTGTGCCCTAATTAATGGGCCTTTGTTGTATAAATAGGGGTGCTTTACACCCTTGAAAGATAAGGAAATCATACACAGAAATATTTCTCCATATTCTTCTGTGTTTTGTGGTTTTCTTATTTTGGTATCAGAGTTAAATGGCAAACGTCGTCTCACCCAATTCGAACCCAAGCTTCAGTACACCATCCCTCAACCAGCTTTTGAATCAGGTAATAGTAATCAAGTTGGATAGAGGAAATTTCTTACTATGGAAAACTGTAGCTCTTCCAATCCTTCAGAGTCACAAATTGAAAGGGTACATACTTGGAGAAATCGTCTGCCCTCCAAAATACCTGGGACAAAATTCAAATGTAACTAGTGTTGTTGAAGGTGTTTCCACTACTGAAGAATCCAACTCTCAAATAGCAGCATAGCGAGTCAAGTGGTAGGAGAAAATAAACCCAGCTTATGAATCTTGGTTTGTTGTAGATCAACTGCTTCTAGGATGGCTTTACAACTCAATGACACCAAAAGTCGCTACACAACTTATGGGTTATGAGCACTCGTTCGATCTGTGGACGGGAATACAAAAGTTATTCGGTGTTCAATCCAGAGCTGAGGAAGATTATCTCCGCCAAACTTTCATCACAAACACGAAAAGGTAA

mRNA sequence

ATGGCTGGGGTTTGCAGATCCCAAGAAAAAGGACAGAGTATTAAGGAAAAAACCAAATACAATCAGCACAAGGAAAAGTCAATAATCCAGTCAGCAGTACAATCAACACAATGCATAAATACAATTCACCACGGTCAGCATTTGGATGAAAACAATCGAGAATCTTCCATTGAGTTAAATGGCAAACGTCGTCTCACCCAATTCGAACCCAAGCTTCAGTACACCATCCCTCAACCAGCTTTTGAATCAGATCAACTGCTTCTAGGATGGCTTTACAACTCAATGACACCAAAAGTCGCTACACAACTTATGGGTTATGAGCACTCGTTCGATCTGTGGACGGGAATACAAAAGTTATTCGGTGTTCAATCCAGAGCTGAGGAAGATTATCTCCGCCAAACTTTCATCACAAACACGAAAAGGTAA

Coding sequence (CDS)

ATGGCTGGGGTTTGCAGATCCCAAGAAAAAGGACAGAGTATTAAGGAAAAAACCAAATACAATCAGCACAAGGAAAAGTCAATAATCCAGTCAGCAGTACAATCAACACAATGCATAAATACAATTCACCACGGTCAGCATTTGGATGAAAACAATCGAGAATCTTCCATTGAGTTAAATGGCAAACGTCGTCTCACCCAATTCGAACCCAAGCTTCAGTACACCATCCCTCAACCAGCTTTTGAATCAGATCAACTGCTTCTAGGATGGCTTTACAACTCAATGACACCAAAAGTCGCTACACAACTTATGGGTTATGAGCACTCGTTCGATCTGTGGACGGGAATACAAAAGTTATTCGGTGTTCAATCCAGAGCTGAGGAAGATTATCTCCGCCAAACTTTCATCACAAACACGAAAAGGTAA

Protein sequence

MAGVCRSQEKGQSIKEKTKYNQHKEKSIIQSAVQSTQCINTIHHGQHLDENNRESSIELNGKRRLTQFEPKLQYTIPQPAFESDQLLLGWLYNSMTPKVATQLMGYEHSFDLWTGIQKLFGVQSRAEEDYLRQTFITNTKR
Homology
BLAST of PI0006235 vs. ExPASy TrEMBL
Match: A0A6J1D5J0 (uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017501 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.9e-16
Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = 0

Query: 79  PAFES----DQLLLGWLYNSMTPKVATQLMGYEHSFDLWTGIQKLFGVQSRAEEDYLRQT 136
           P +ES    DQLLLGWLYNSMTP+VATQ+MGYE++ DLW  IQ+LFGVQS+AEEDYLRQ 
Sbjct: 33  PLYESWVTTDQLLLGWLYNSMTPEVATQVMGYENACDLWAAIQELFGVQSQAEEDYLRQV 92

BLAST of PI0006235 vs. ExPASy TrEMBL
Match: A0A5A7VPY0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G001000 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.6e-12
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 0

Query: 83  SDQLLLGWLYNSMTPKVATQLMGYEHSFDLWTGIQKLFGVQSRAEEDYLRQTFITNTK 141
           +D LLLGWLYNSMTP+V  QLMG+ ++ DLW   Q LFG+QSRA+ED+L QTF T  K
Sbjct: 111 TDLLLLGWLYNSMTPEVTIQLMGFTNAKDLWEATQDLFGIQSRAKEDFLHQTFQTTKK 168

BLAST of PI0006235 vs. ExPASy TrEMBL
Match: A0A1S4DY80 (uncharacterized protein LOC107991116 OS=Cucumis melo OX=3656 GN=LOC107991116 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.6e-12
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 0

Query: 83  SDQLLLGWLYNSMTPKVATQLMGYEHSFDLWTGIQKLFGVQSRAEEDYLRQTFITNTK 141
           +D LLLGWLYNSMTP+V  QLMG+ ++ DLW   Q LFG+QSRA+ED+L QTF T  K
Sbjct: 186 TDLLLLGWLYNSMTPEVTIQLMGFTNAKDLWEATQDLFGIQSRAKEDFLHQTFQTTKK 243

BLAST of PI0006235 vs. ExPASy TrEMBL
Match: A0A5A7UCB8 (Integrase core domain containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00710 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.7e-12
Identity = 39/61 (63.93%), Postives = 46/61 (75.41%), Query Frame = 0

Query: 79  PAFES----DQLLLGWLYNSMTPKVATQLMGYEHSFDLWTGIQKLFGVQSRAEEDYLRQT 136
           PAFE+    DQLLL W+YNSMTPK+ TQLM  EHS DLW  IQ+LF +QSR +E+Y R T
Sbjct: 22  PAFEAWLVVDQLLLRWMYNSMTPKIVTQLMRLEHSKDLWNPIQELFEIQSRVKEEYPRPT 81

BLAST of PI0006235 vs. ExPASy TrEMBL
Match: A0A5D3D6E7 (Integrase core domain containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold522G00230 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.7e-12
Identity = 39/61 (63.93%), Postives = 46/61 (75.41%), Query Frame = 0

Query: 79  PAFES----DQLLLGWLYNSMTPKVATQLMGYEHSFDLWTGIQKLFGVQSRAEEDYLRQT 136
           PAFE+    DQLLL W+YNSMTPK+ TQLM  EHS DLW  IQ+LF +QSR +E+Y R T
Sbjct: 22  PAFEAWLVVDQLLLRWMYNSMTPKIVTQLMRLEHSKDLWNPIQELFEIQSRVKEEYPRPT 81

BLAST of PI0006235 vs. NCBI nr
Match: XP_022148963.1 (uncharacterized protein LOC111017501 [Momordica charantia])

HSP 1 Score: 95.5 bits (236), Expect = 3.9e-16
Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = 0

Query: 79  PAFES----DQLLLGWLYNSMTPKVATQLMGYEHSFDLWTGIQKLFGVQSRAEEDYLRQT 136
           P +ES    DQLLLGWLYNSMTP+VATQ+MGYE++ DLW  IQ+LFGVQS+AEEDYLRQ 
Sbjct: 33  PLYESWVTTDQLLLGWLYNSMTPEVATQVMGYENACDLWAAIQELFGVQSQAEEDYLRQV 92

BLAST of PI0006235 vs. NCBI nr
Match: XP_038904321.1 (uncharacterized protein LOC120090675 [Benincasa hispida])

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-14
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = 0

Query: 84  DQLLLGWLYNSMTPKVATQLMGYEHSFDLWTGIQKLFGVQSRAEEDYLRQTFITNTK 141
           DQLLLGWLYNSMTPK+A Q+MG+E + DLW  IQ+LFG+QSRAEEDYLR  F T  K
Sbjct: 53  DQLLLGWLYNSMTPKIAIQVMGFECARDLWINIQQLFGIQSRAEEDYLRHVFQTTRK 109

BLAST of PI0006235 vs. NCBI nr
Match: XP_038905164.1 (uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida])

HSP 1 Score: 87.8 bits (216), Expect = 8.1e-14
Identity = 44/66 (66.67%), Postives = 49/66 (74.24%), Query Frame = 0

Query: 79  PAFES----DQLLLGWLYNSMTPKVATQLMGYEHSFDLWTGIQKLFGVQSRAEEDYLRQT 138
           P +ES    DQLLLGWLYNSMTP+VA Q+MG E + DLWT I +LFGVQSR EEDYLR  
Sbjct: 44  PQYESWMAVDQLLLGWLYNSMTPEVAIQVMGCECAKDLWTSIPQLFGVQSRVEEDYLRHV 103

Query: 139 FITNTK 141
           F T  K
Sbjct: 104 FQTTRK 109

BLAST of PI0006235 vs. NCBI nr
Match: XP_038905161.1 (uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida])

HSP 1 Score: 87.8 bits (216), Expect = 8.1e-14
Identity = 44/66 (66.67%), Postives = 49/66 (74.24%), Query Frame = 0

Query: 79  PAFES----DQLLLGWLYNSMTPKVATQLMGYEHSFDLWTGIQKLFGVQSRAEEDYLRQT 138
           P +ES    DQLLLGWLYNSMTP+VA Q+MG E + DLWT I +LFGVQSR EEDYLR  
Sbjct: 44  PQYESWMAVDQLLLGWLYNSMTPEVAIQVMGCECAKDLWTSIPQLFGVQSRVEEDYLRHV 103

Query: 139 FITNTK 141
           F T  K
Sbjct: 104 FQTTRK 109

BLAST of PI0006235 vs. NCBI nr
Match: XP_031745012.1 (uncharacterized protein LOC116405217 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-12
Identity = 39/57 (68.42%), Postives = 44/57 (77.19%), Query Frame = 0

Query: 84  DQLLLGWLYNSMTPKVATQLMGYEHSFDLWTGIQKLFGVQSRAEEDYLRQTFITNTK 141
           D LLLGW+YNSMTP+VA QLMG+  + DLW  IQ LFGVQ RAEED+LR TF T  K
Sbjct: 96  DLLLLGWMYNSMTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQK 152

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1D5J01.9e-1673.77uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A5A7VPY01.6e-1263.79Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S4DY801.6e-1263.79uncharacterized protein LOC107991116 OS=Cucumis melo OX=3656 GN=LOC107991116 PE=... [more]
A0A5A7UCB83.7e-1263.93Integrase core domain containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3D6E73.7e-1263.93Integrase core domain containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
Match NameE-valueIdentityDescription
XP_022148963.13.9e-1673.77uncharacterized protein LOC111017501 [Momordica charantia][more]
XP_038904321.11.2e-1471.93uncharacterized protein LOC120090675 [Benincasa hispida][more]
XP_038905164.18.1e-1466.67uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida][more]
XP_038905161.18.1e-1466.67uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida][more]
XP_031745012.12.0e-1268.42uncharacterized protein LOC116405217 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0006235.1PI0006235.1mRNA