MS016789 (gene) Bitter gourd (TR) v1

Overview
NameMS016789
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionABC transporter B family member 26, chloroplastic-like
Locationscaffold9_1: 29082 .. 29396 (-)
RNA-Seq ExpressionMS016789
SyntenyMS016789
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACATTGCCAACCGGAATCTTTCTATTTCCTTTCCTCCGTTTTTCCCGCCGGTGGAATTTTCTCCGAGATCAAACTCCCGGTCTTCTGGTTCCAAGCTCACGATGAAGCTTCAGTTCCCGATTATCGTCTCTAGCAGTTTTAGTAGTAACGAGTTTAAATTCTATCGCCACCGAATGCGAAATTCTTCCTTGATTCTTCGATATATGGTGACCGAAAATGAGGGAAATGGAGACGATAATTTCAAGTCATTTGGACATTGGGTTCGTGTTTCCTGTTCGTCGTTTCCTGGTGGCAGTTGGTGGAATTTAGAT

mRNA sequence

ATGGACATTGCCAACCGGAATCTTTCTATTTCCTTTCCTCCGTTTTTCCCGCCGGTGGAATTTTCTCCGAGATCAAACTCCCGGTCTTCTGGTTCCAAGCTCACGATGAAGCTTCAGTTCCCGATTATCGTCTCTAGCAGTTTTAGTAGTAACGAGTTTAAATTCTATCGCCACCGAATGCGAAATTCTTCCTTGATTCTTCGATATATGGTGACCGAAAATGAGGGAAATGGAGACGATAATTTCAAGTCATTTGGACATTGGGTTCGTGTTTCCTGTTCGTCGTTTCCTGGTGGCAGTTGGTGGAATTTAGAT

Coding sequence (CDS)

ATGGACATTGCCAACCGGAATCTTTCTATTTCCTTTCCTCCGTTTTTCCCGCCGGTGGAATTTTCTCCGAGATCAAACTCCCGGTCTTCTGGTTCCAAGCTCACGATGAAGCTTCAGTTCCCGATTATCGTCTCTAGCAGTTTTAGTAGTAACGAGTTTAAATTCTATCGCCACCGAATGCGAAATTCTTCCTTGATTCTTCGATATATGGTGACCGAAAATGAGGGAAATGGAGACGATAATTTCAAGTCATTTGGACATTGGGTTCGTGTTTCCTGTTCGTCGTTTCCTGGTGGCAGTTGGTGGAATTTAGAT

Protein sequence

MDIANRNLSISFPPFFPPVEFSPRSNSRSSGSKLTMKLQFPIIVSSSFSSNEFKFYRHRMRNSSLILRYMVTENEGNGDDNFKSFGHWVRVSCSSFPGGSWWNLD
Homology
[Close]
BLAST of MS016789 vs. NCBI nr
Match: XP_022133689.1 (ABC transporter B family member 26, chloroplastic-like [Momordica charantia])

HSP 1 Score: 186.4 bits (472), Expect = 1.2e-43
Identity = 91/105 (86.67%), Postives = 92/105 (87.62%), Query Frame = 0 

Query: 1   MDIANRNLSISFPPFFPPVEFSPRSNSRSSGSKLTMKLQFPIIVSSSFSSNEFKFYRHRM 60
           MDIA R L ISFPPFFPP  FSPRSNSRSSGSKLTMK QFPIIV SSF SNEFKFYRHRM
Sbjct: 1   MDIAYRYLCISFPPFFPPAGFSPRSNSRSSGSKLTMKPQFPIIVYSSFRSNEFKFYRHRM 60

Query: 61  RNSSLILRYMVTENEGNGDDNFKSFGHWVRVSCSSFPGGSWWNLD 106
           RNSSLILRYMV EN+GNGDDNFKSFGHWV VS S FP GSWWNLD
Sbjct: 61  RNSSLILRYMVPENDGNGDDNFKSFGHWVSVSRSLFPDGSWWNLD 105

[Close]
BLAST of MS016789 vs. NCBI nr
Match: XP_038891218.1 (ABC transporter B family member 26, chloroplastic-like isoform X1 [Benincasa hispida] >XP_038891219.1 ABC transporter B family member 26, chloroplastic-like isoform X1 [Benincasa hispida])

HSP 1 Score: 136.0 bits (341), Expect = 1.9e-28
Identity = 68/107 (63.55%), Postives = 82/107 (76.64%), Query Frame = 0 

Query: 1   MDIANRNLSISFPPFFPPVEFSPRSNSRSSGSKLTMKLQFPIIVSSSFSSNEFKFYRHRM 60
           MDIA +NL  SF P+FPP EF+P      SG KLT KLQFPII+SS+  S EFK +R+R+
Sbjct: 1   MDIAYQNLRSSFSPYFPPAEFAP-----MSGFKLTTKLQFPIIISSNLRSKEFKSFRYRV 60

Query: 61  RNSSLILRYMVTENEGNGDDNFKSFGHWVRVSCSSFPGG--SWWNLD 106
           RNSSL+L+YMV EN+GNGD+ FKSFGH +R+S S F GG  SWWNLD
Sbjct: 61  RNSSLMLQYMVPENDGNGDEKFKSFGHLIRISRSLFSGGSSSWWNLD 102

[Close]
BLAST of MS016789 vs. NCBI nr
Match: XP_038891220.1 (ABC transporter B family member 26, chloroplastic-like isoform X2 [Benincasa hispida])

HSP 1 Score: 136.0 bits (341), Expect = 1.9e-28
Identity = 68/107 (63.55%), Postives = 82/107 (76.64%), Query Frame = 0 

Query: 1   MDIANRNLSISFPPFFPPVEFSPRSNSRSSGSKLTMKLQFPIIVSSSFSSNEFKFYRHRM 60
           MDIA +NL  SF P+FPP EF+P      SG KLT KLQFPII+SS+  S EFK +R+R+
Sbjct: 1   MDIAYQNLRSSFSPYFPPAEFAP-----MSGFKLTTKLQFPIIISSNLRSKEFKSFRYRV 60

Query: 61  RNSSLILRYMVTENEGNGDDNFKSFGHWVRVSCSSFPGG--SWWNLD 106
           RNSSL+L+YMV EN+GNGD+ FKSFGH +R+S S F GG  SWWNLD
Sbjct: 61  RNSSLMLQYMVPENDGNGDEKFKSFGHLIRISRSLFSGGSSSWWNLD 102

[Close]
BLAST of MS016789 vs. NCBI nr
Match: XP_038891221.1 (ABC transporter B family member 26, chloroplastic-like isoform X3 [Benincasa hispida])

HSP 1 Score: 136.0 bits (341), Expect = 1.9e-28
Identity = 68/107 (63.55%), Postives = 82/107 (76.64%), Query Frame = 0 

Query: 1   MDIANRNLSISFPPFFPPVEFSPRSNSRSSGSKLTMKLQFPIIVSSSFSSNEFKFYRHRM 60
           MDIA +NL  SF P+FPP EF+P      SG KLT KLQFPII+SS+  S EFK +R+R+
Sbjct: 1   MDIAYQNLRSSFSPYFPPAEFAP-----MSGFKLTTKLQFPIIISSNLRSKEFKSFRYRV 60

Query: 61  RNSSLILRYMVTENEGNGDDNFKSFGHWVRVSCSSFPGG--SWWNLD 106
           RNSSL+L+YMV EN+GNGD+ FKSFGH +R+S S F GG  SWWNLD
Sbjct: 61  RNSSLMLQYMVPENDGNGDEKFKSFGHLIRISRSLFSGGSSSWWNLD 102

[Close]
BLAST of MS016789 vs. NCBI nr
Match: XP_038891222.1 (ABC transporter B family member 26, chloroplastic-like isoform X4 [Benincasa hispida])

HSP 1 Score: 136.0 bits (341), Expect = 1.9e-28
Identity = 68/107 (63.55%), Postives = 82/107 (76.64%), Query Frame = 0 

Query: 1   MDIANRNLSISFPPFFPPVEFSPRSNSRSSGSKLTMKLQFPIIVSSSFSSNEFKFYRHRM 60
           MDIA +NL  SF P+FPP EF+P      SG KLT KLQFPII+SS+  S EFK +R+R+
Sbjct: 1   MDIAYQNLRSSFSPYFPPAEFAP-----MSGFKLTTKLQFPIIISSNLRSKEFKSFRYRV 60

Query: 61  RNSSLILRYMVTENEGNGDDNFKSFGHWVRVSCSSFPGG--SWWNLD 106
           RNSSL+L+YMV EN+GNGD+ FKSFGH +R+S S F GG  SWWNLD
Sbjct: 61  RNSSLMLQYMVPENDGNGDEKFKSFGHLIRISRSLFSGGSSSWWNLD 102

[Close]
BLAST of MS016789 vs. ExPASy TrEMBL
Match: A0A6J1BWQ8 (ABC transporter B family member 26, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111006215 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 6.0e-44
Identity = 91/105 (86.67%), Postives = 92/105 (87.62%), Query Frame = 0 

Query: 1   MDIANRNLSISFPPFFPPVEFSPRSNSRSSGSKLTMKLQFPIIVSSSFSSNEFKFYRHRM 60
           MDIA R L ISFPPFFPP  FSPRSNSRSSGSKLTMK QFPIIV SSF SNEFKFYRHRM
Sbjct: 1   MDIAYRYLCISFPPFFPPAGFSPRSNSRSSGSKLTMKPQFPIIVYSSFRSNEFKFYRHRM 60

Query: 61  RNSSLILRYMVTENEGNGDDNFKSFGHWVRVSCSSFPGGSWWNLD 106
           RNSSLILRYMV EN+GNGDDNFKSFGHWV VS S FP GSWWNLD
Sbjct: 61  RNSSLILRYMVPENDGNGDDNFKSFGHWVSVSRSLFPDGSWWNLD 105

[Close]
BLAST of MS016789 vs. ExPASy TrEMBL
Match: A0A1S3C888 (ABC transporter B family member 26, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103498105 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.9e-26
Identity = 64/106 (60.38%), Postives = 77/106 (72.64%), Query Frame = 0 

Query: 1   MDIANRNLSISFPPFFPPVEFSPRSNSRSSGSKLTMKLQFPIIVSSSFSSNEFKFYRHRM 60
           MDIA +NL  SFPP+ PP EFSP     +SG KLT KL FPI++S++   NEFK   +R+
Sbjct: 1   MDIAYQNLRSSFPPYLPPPEFSP-----TSGFKLTKKLHFPIMISTNCRRNEFKSSSYRV 60

Query: 61  RNSSLILRYMVTENEGNGDDNFKSFGHWVRVSCSSFPG--GSWWNL 105
           RNSSL+L+Y   EN+GNGD+NFKSFGHWV V  S FPG   SWWNL
Sbjct: 61  RNSSLMLQYTAPENDGNGDENFKSFGHWVHVPLSLFPGVSSSWWNL 101

[Close]
BLAST of MS016789 vs. ExPASy TrEMBL
Match: A0A5A7T462 (ABC transporter B family member 26 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002110 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.9e-26
Identity = 64/106 (60.38%), Postives = 77/106 (72.64%), Query Frame = 0 

Query: 1   MDIANRNLSISFPPFFPPVEFSPRSNSRSSGSKLTMKLQFPIIVSSSFSSNEFKFYRHRM 60
           MDIA +NL  SFPP+ PP EFSP     +SG KLT KL FPI++S++   NEFK   +R+
Sbjct: 1   MDIAYQNLRSSFPPYLPPPEFSP-----TSGFKLTKKLHFPIMISTNCRRNEFKSSSYRV 60

Query: 61  RNSSLILRYMVTENEGNGDDNFKSFGHWVRVSCSSFPG--GSWWNL 105
           RNSSL+L+Y   EN+GNGD+NFKSFGHWV V  S FPG   SWWNL
Sbjct: 61  RNSSLMLQYTAPENDGNGDENFKSFGHWVHVPLSLFPGVSSSWWNL 101

[Close]
BLAST of MS016789 vs. ExPASy TrEMBL
Match: A0A5D3BV94 (ABC transporter B family member 26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00160 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.9e-26
Identity = 64/106 (60.38%), Postives = 77/106 (72.64%), Query Frame = 0 

Query: 1   MDIANRNLSISFPPFFPPVEFSPRSNSRSSGSKLTMKLQFPIIVSSSFSSNEFKFYRHRM 60
           MDIA +NL  SFPP+ PP EFSP     +SG KLT KL FPI++S++   NEFK   +R+
Sbjct: 1   MDIAYQNLRSSFPPYLPPPEFSP-----TSGFKLTKKLHFPIMISTNCRRNEFKSSSYRV 60

Query: 61  RNSSLILRYMVTENEGNGDDNFKSFGHWVRVSCSSFPG--GSWWNL 105
           RNSSL+L+Y   EN+GNGD+NFKSFGHWV V  S FPG   SWWNL
Sbjct: 61  RNSSLMLQYTAPENDGNGDENFKSFGHWVHVPLSLFPGVSSSWWNL 101

[Close]
BLAST of MS016789 vs. ExPASy TrEMBL
Match: A0A0A0KR30 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G523050 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.9e-26
Identity = 62/106 (58.49%), Postives = 80/106 (75.47%), Query Frame = 0 

Query: 2   DIANRNLSISFPPFFPPVEFSPRSNSRSSGSKLTMKLQFPIIVSSSFSSNEFKFYRHRMR 61
           DIA +NL  SFPP+ PP EF+P     +SG KLT KLQFPI++S++   NEFK   +R+R
Sbjct: 6   DIAYQNLRTSFPPYLPPPEFAP-----TSGFKLTKKLQFPIMISTNCRRNEFKSSSYRVR 65

Query: 62  NSSLILRYMVTENEGNGDDNFKSFGHWVRVSCSSFPG--GSWWNLD 106
           NSSL+ +YM+ E++GNGD+NF+SFGHW+ VS S FPG   SWWNLD
Sbjct: 66  NSSLMFQYMMPEDDGNGDENFESFGHWIHVSLSLFPGVSYSWWNLD 106

The following BLAST results are available for this feature:
BLAST of MS016789 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022133689.11.2e-4386.67ABC transporter B family member 26, chloroplastic-like [Momordica charantia][more]
XP_038891218.11.9e-2863.55ABC transporter B family member 26, chloroplastic-like isoform X1 [Benincasa his... [more]
XP_038891220.11.9e-2863.55ABC transporter B family member 26, chloroplastic-like isoform X2 [Benincasa his... [more]
XP_038891221.11.9e-2863.55ABC transporter B family member 26, chloroplastic-like isoform X3 [Benincasa his... [more]
XP_038891222.11.9e-2863.55ABC transporter B family member 26, chloroplastic-like isoform X4 [Benincasa his... [more]
BLAST of MS016789 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS016789 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1BWQ86.0e-4486.67ABC transporter B family member 26, chloroplastic-like OS=Momordica charantia OX... [more]
A0A1S3C8881.9e-2660.38ABC transporter B family member 26, chloroplastic-like OS=Cucumis melo OX=3656 G... [more]
A0A5A7T4621.9e-2660.38ABC transporter B family member 26 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C... [more]
A0A5D3BV941.9e-2660.38ABC transporter B family member 26 OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A0A0KR301.9e-2658.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G523050 PE=4 SV=1[more]
BLAST of MS016789 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS016789.1MS016789.1mRNA