MS013503.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS013503.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	60S ribosomal protein L18a-like protein
Location	scaffold402: 2025185 .. 2027863 (+)
Sequence length	420
RNA-Seq Expression	MS013503.1
Synteny	MS013503.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGGCGACGGGAAAAACAGCGCGGTATTGGGCGATCCACAGAGTCAATACCATTACGGTACGTTTCAGGGTGTCGCAAACTATTATCCTTCTGCCTCACAGCCGCAGCCGCAGCCGCAACCCCATTCTGTCGTTGGTTTCCCTCAACCGGTTGCGCCGCCCCGAGTTTCTGGCCCTCACCCATATTACCATGGACATCTGGGTTACCAAGCCGTCCCGGGTAAATAACTCACCTATGTTCATGAATTTGGAGGATATTTTATGGTTTGAATTTTGGTAGATTAGTTACGAATTCAGAAGCTAAAGAACGATGTCGGAGGAGTTTGTGCCGAAATTTTGCTGAAATAATCTTGTTTGAAGGGTATACACGAATTATTTGCTTTGTTTAGGATTTGACTGTATTTCTTATGGTCTTGATCAATGATCATGATGATTTTGCCTTGTTATTTCTTTCCACATATCCGTATCCTTTGGTTTGATGGGTTTTTAAATGGGTTTCTGATGCTCACTGTGGTTTCCATTGATTTGCTTCATTGGATGCTTGGGCTGGGCTATTGATCTAATGGTATGAATGTATGAATAATATTCCAATATTTGCTTTGATCATCGCTCTCTAATTTTGATTATCGTCCTCTAGTAAATTGTAGTTGAATGGTTCAAGGGCCGACTTATTGAATTAATGATGATCTTGGTAGCAACAGGGTAGGATTTTTAGTCTTGAGTTTGTATCTGGTATGAGGACATGGCAGTTTCTGTGCAAGAGAGTAAGGAGGAGAGAGTTTGGGAAATACATCTCTCCCCTTTGTCATGGAGATCACAAAAAGAAAATTTCCGATTGACTTGAATTTTAAAAAAGGAGAATACCTGCAGAACTCTCTACTTTGAGATTACCGGTACCACCTAGCTACTAGAAACAGGGTGCTCTCTCTTAAAATTCCGCAACCTCTTTGAAGTTGTTATTAAGAATCCAAATGGTGTTTATCAAAAAAAAAAAAAAAAAAAGAATCCTAATGGTTCTTTTCATTCTACGTCTCTATTCTTCCATATTATGGTTAGCATGAAATTCTTCCAGAGAGTTTGGAGAAGGGCGGTCTCTTGAACATGCCTCATCACTTATTTTCTGTGTCTATGGTGCCTAGGAAAGTGTTAAAGGAGATAGAGAAGATTCTAAGGTAGAAGACAGAGAAGATTTTGAAGAACTACCTGGAGAAGGTCTGACCTTGGGTAGTGGCTAGCATCTAGTTATATGGAAGACAGCGTCTCTTTAGCTGGAGAAGAATGGTCTGCATGTTACTAGAGCCATTTTATGGGATGTATGGTTAGAGAGAATGAATGAATCTTTTTAAGAGAGGAAAATATTATGTGAAAATTTTAGGAAAGTTATGTTTTAGTTTCCTTTTCGCGGAGTGCCTTGCATAAGGTCTTTTGGAGTTATTCTCTTTCCATGGTTTGTGTCGATGGGGGAGTTTCTTTTGTTTTTCCCCGTTTTCCTTTCTAAATCTTTCAGTGCGTTGGCTCTTGCCTGGTAATGATGGCCTAAAAGCACTTTTTGGATAAAATCTCATGTATTTAGAGGAAGGCCGGTTGGATATTAAAAGTAATTGGGAAGTTCCATTACCACTTTTTGGAAAACTCGCACATCATGAGGAGCTGTATCCTGATCTTCATTACTGTACTTGCATCACATGTAATGATGTACTAATTATTACTAGTACCTGAGTTTCTTTCATGGTGTTAGCTTTTCCATGCAGCAGGGACCATACTAACAACTTAATCTTCTTTGGGACACTGATTTCCGGAAGTCTCTTGGGCATCACCCAATGAGAATACAGCATTGATATACCAAATTCATTTTTGAAGGGATTGCTTAGAATGTGTTTATCATGATTCATGAAAGTGATATTTCTTTGAAGACTGTAATTGCTTTGTCCTCCCAATGTAACCTTGGTATAAAATTCCACCGATTTCTTTCTGATAGAACTGAGACTGAATCATATAACTGACTGCTTTTCACCCCCAAAAGTGAAAGGGGTATCACTTGCCAGATATTTCAATCTATATGTCTTGCTAGTGAGAGAATTTATAACACCCAGCATCTTGCTCATTGCAAATCTACACCAAATCAGTGGCAATAAGATTATATAATTCTGTTGATACTGACATTAATTAAAGATGTGCGTTGAAAGTTGAATGCACTGTTCTGCTCTCATGCAAGTGTTTCCTTGTGAAATAACTTTTCCTTTTCTTTTAAAAAAGAACTAAATACTTAATTTGGTCAATCATGTATGCGCATTTGTGTCTGTGCGTAGGTGTATAAATTTATATCTTTATGCTCAATGGTAGGGATGTCTTTATCCATCAACCTCTTTAATGCTTTTGTTTCTTGTAGTTCAAGGTTATGCTATTATTGAGGGAAGACCTTATCAAGAAGCCCGTCTTCCTTGCTGTGGCATTGGCATGGGCTGGTTCTTGTAAGTTCACATTTGTAACTCCCCATTTCTCTACACTCGTGTTCCAACACGTTGATGATTAAATAAAAAATATAATAATTTTTTTGTCAGGTTTGTAATTGGGTTCTTTCTTGGTGGCATTCCTTGGTATGTTGGAGCTTTTATCGTACTCTTTGTACGAGTGGATTACCGAGAAAAGCCTGGATATGTTGCATGCGTAATCGCA

mRNA sequence

ATGAGTGGCGACGGGAAAAACAGCGCGGTATTGGGCGATCCACAGAGTCAATACCATTACGGTACGTTTCAGGGTGTCGCAAACTATTATCCTTCTGCCTCACAGCCGCAGCCGCAGCCGCAACCCCATTCTGTCGTTGGTTTCCCTCAACCGGTTGCGCCGCCCCGAGTTTCTGGCCCTCACCCATATTACCATGGACATCTGGGTTACCAAGCCGTCCCGGTTCAAGGTTATGCTATTATTGAGGGAAGACCTTATCAAGAAGCCCGTCTTCCTTGCTGTGGCATTGGCATGGGCTGGTTCTTGTTTGTAATTGGGTTCTTTCTTGGTGGCATTCCTTGGTATGTTGGAGCTTTTATCGTACTCTTTGTACGAGTGGATTACCGAGAAAAGCCTGGATATGTTGCATGCGTAATCGCA

Coding sequence (CDS)

ATGAGTGGCGACGGGAAAAACAGCGCGGTATTGGGCGATCCACAGAGTCAATACCATTACGGTACGTTTCAGGGTGTCGCAAACTATTATCCTTCTGCCTCACAGCCGCAGCCGCAGCCGCAACCCCATTCTGTCGTTGGTTTCCCTCAACCGGTTGCGCCGCCCCGAGTTTCTGGCCCTCACCCATATTACCATGGACATCTGGGTTACCAAGCCGTCCCGGTTCAAGGTTATGCTATTATTGAGGGAAGACCTTATCAAGAAGCCCGTCTTCCTTGCTGTGGCATTGGCATGGGCTGGTTCTTGTTTGTAATTGGGTTCTTTCTTGGTGGCATTCCTTGGTATGTTGGAGCTTTTATCGTACTCTTTGTACGAGTGGATTACCGAGAAAAGCCTGGATATGTTGCATGCGTAATCGCA

Protein sequence

MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGWFLFVIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACVIA

Homology

[Close]

BLAST of MS013503.1 vs. NCBI nr
Match: XP_022140257.1 (60S ribosomal protein L18a-like protein [Momordica charantia])

HSP 1 Score: 297.0 bits (759), Expect = 8.7e-77
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGP 60
           MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGP
Sbjct: 1   MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGP 60

Query: 61  HPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGWFLFVIGFFLGGIPWYVGAFI 120
           HPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGWFLFVIGFFLGGIPWYVGAFI
Sbjct: 61  HPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGWFLFVIGFFLGGIPWYVGAFI 120

Query: 121 VLFVRVDYREKPGYVACVIA 141
           VLFVRVDYREKPGYVACVIA
Sbjct: 121 VLFVRVDYREKPGYVACVIA 140

[Close]

BLAST of MS013503.1 vs. NCBI nr
Match: XP_008444018.1 (PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo])

HSP 1 Score: 261.9 bits (668), Expect = 3.1e-66
Identity = 124/140 (88.57%), Postives = 128/140 (91.43%), Query Frame = 0


Query: 1   MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGP 60
           MSGDGK+S V GDP SQYHYGTFQGVANYY S  QPQPQPQP SVVGFPQPVAPP VSG 
Sbjct: 1   MSGDGKSSVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAPPVVSGH 60

Query: 61  HPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGWFLFVIGFFLGGIPWYVGAFI 120
            P YHGHLGYQAVPVQGYAI+EGRP+QEARLPCCGIGMGWFLF+IGFFLGGIPWYVGAFI
Sbjct: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120

Query: 121 VLFVRVDYREKPGYVACVIA 141
           VLFVRVDYREKPGYVAC IA
Sbjct: 121 VLFVRVDYREKPGYVACAIA 140

[Close]

BLAST of MS013503.1 vs. NCBI nr
Match: XP_004147407.1 (60S ribosomal protein L18a-like protein [Cucumis sativus] >KGN65566.1 hypothetical protein Csa_019751 [Cucumis sativus])

HSP 1 Score: 257.7 bits (657), Expect = 5.8e-65
Identity = 122/140 (87.14%), Postives = 127/140 (90.71%), Query Frame = 0


Query: 1   MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGP 60
           MSGDGK++ V GDP SQYHYGTFQGVANYY S  QPQPQPQP SVVGFPQPVA P VSG 
Sbjct: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGH 60

Query: 61  HPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGWFLFVIGFFLGGIPWYVGAFI 120
            P YHGHLGYQAVPVQGYAI+EGRP+QEARLPCCGIGMGWFLF+IGFFLGGIPWYVGAFI
Sbjct: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120

Query: 121 VLFVRVDYREKPGYVACVIA 141
           VLFVRVDYREKPGYVAC IA
Sbjct: 121 VLFVRVDYREKPGYVACAIA 140

[Close]

BLAST of MS013503.1 vs. NCBI nr
Match: XP_022927552.1 (60S ribosomal protein L18a-like protein [Cucurbita moschata] >KAG6583922.1 60S ribosomal protein L18a-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 250.4 bits (638), Expect = 9.3e-63
Identity = 119/140 (85.00%), Postives = 125/140 (89.29%), Query Frame = 0


Query: 1   MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGP 60
           MSGDGK+SAV GDPQSQYHYGTFQGVANYY SA +PQPQP P SVVGFP  VAPPR    
Sbjct: 1   MSGDGKSSAVFGDPQSQYHYGTFQGVANYYSSAPEPQPQPHPQSVVGFPPQVAPPR---- 60

Query: 61  HPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGWFLFVIGFFLGGIPWYVGAFI 120
           HP YHGHL YQAVPVQGYAIIEGRP+ EARLPCCGIGMGWFLF+IGFFLGGIPWYVGAF+
Sbjct: 61  HPCYHGHLDYQAVPVQGYAIIEGRPFHEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFV 120

Query: 121 VLFVRVDYREKPGYVACVIA 141
           VLFVRVDYREKPGY+AC IA
Sbjct: 121 VLFVRVDYREKPGYIACAIA 136

[Close]

BLAST of MS013503.1 vs. NCBI nr
Match: XP_023519744.1 (60S ribosomal protein L18a-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248.8 bits (634), Expect = 2.7e-62
Identity = 119/140 (85.00%), Postives = 124/140 (88.57%), Query Frame = 0


Query: 1   MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGP 60
           MSGDGK+SAV GDPQSQYHYGTFQGVANYY SA QPQPQP P SVVGFP  VAPPR    
Sbjct: 1   MSGDGKSSAVFGDPQSQYHYGTFQGVANYYSSAPQPQPQPHPQSVVGFPPQVAPPR---- 60

Query: 61  HPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGWFLFVIGFFLGGIPWYVGAFI 120
           HP YHGHL YQAVPVQGYAIIEG P+ EARLPCCGIGMGWFLF+IGFFLGGIPWYVGAF+
Sbjct: 61  HPCYHGHLDYQAVPVQGYAIIEGGPFHEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFV 120

Query: 121 VLFVRVDYREKPGYVACVIA 141
           VLFVRVDYREKPGY+AC IA
Sbjct: 121 VLFVRVDYREKPGYIACAIA 136

[Close]

BLAST of MS013503.1 vs. ExPASy Swiss-Prot
Match: Q8L9S1 (60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g29970 PE=2 SV=2)

HSP 1 Score: 120.6 bits (301), Expect = 1.5e-26
Identity = 71/134 (52.99%), Postives = 81/134 (60.45%), Query Frame = 0


Query: 15  QSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYH--GHLG--- 74
           Q QY+YGTFQGVAN+      P P P P     F QP  P      H Y +  GH G   
Sbjct: 16  QHQYYYGTFQGVANF------PTPTPPPQ----FMQPQHPITTFPGHAYQNLQGHGGGVN 75

Query: 75  -YQAVP--VQGYAIIEGRPYQEARLPCCGIGMGWFLFVIGFFLGGIPWYVGAFIVLFVRV 134
             Q  P  V  Y ++E RP  E  LPCCG+GMGWFLF++GF  GGIPWY+GAFIVL   V
Sbjct: 76  YAQGFPVVVPDYTVVEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSV 135

Query: 135 DYREKPGYVACVIA 141
           D+REK GYVAC IA
Sbjct: 136 DHREKAGYVACSIA 139

[Close]

BLAST of MS013503.1 vs. ExPASy TrEMBL
Match: A0A6J1CGC1 (60S ribosomal protein L18a-like protein OS=Momordica charantia OX=3673 GN=LOC111010965 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 4.2e-77
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGP 60
           MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGP
Sbjct: 1   MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGP 60

Query: 61  HPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGWFLFVIGFFLGGIPWYVGAFI 120
           HPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGWFLFVIGFFLGGIPWYVGAFI
Sbjct: 61  HPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGWFLFVIGFFLGGIPWYVGAFI 120

Query: 121 VLFVRVDYREKPGYVACVIA 141
           VLFVRVDYREKPGYVACVIA
Sbjct: 121 VLFVRVDYREKPGYVACVIA 140

[Close]

BLAST of MS013503.1 vs. ExPASy TrEMBL
Match: A0A1S3B9D9 (60S ribosomal protein L18a-like protein OS=Cucumis melo OX=3656 GN=LOC103487462 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.5e-66
Identity = 124/140 (88.57%), Postives = 128/140 (91.43%), Query Frame = 0


Query: 1   MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGP 60
           MSGDGK+S V GDP SQYHYGTFQGVANYY S  QPQPQPQP SVVGFPQPVAPP VSG 
Sbjct: 1   MSGDGKSSVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAPPVVSGH 60

Query: 61  HPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGWFLFVIGFFLGGIPWYVGAFI 120
            P YHGHLGYQAVPVQGYAI+EGRP+QEARLPCCGIGMGWFLF+IGFFLGGIPWYVGAFI
Sbjct: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120

Query: 121 VLFVRVDYREKPGYVACVIA 141
           VLFVRVDYREKPGYVAC IA
Sbjct: 121 VLFVRVDYREKPGYVACAIA 140

[Close]

BLAST of MS013503.1 vs. ExPASy TrEMBL
Match: A0A0A0M051 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G448970 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.8e-65
Identity = 122/140 (87.14%), Postives = 127/140 (90.71%), Query Frame = 0


Query: 1   MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGP 60
           MSGDGK++ V GDP SQYHYGTFQGVANYY S  QPQPQPQP SVVGFPQPVA P VSG 
Sbjct: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGH 60

Query: 61  HPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGWFLFVIGFFLGGIPWYVGAFI 120
            P YHGHLGYQAVPVQGYAI+EGRP+QEARLPCCGIGMGWFLF+IGFFLGGIPWYVGAFI
Sbjct: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120

Query: 121 VLFVRVDYREKPGYVACVIA 141
           VLFVRVDYREKPGYVAC IA
Sbjct: 121 VLFVRVDYREKPGYVACAIA 140

[Close]

BLAST of MS013503.1 vs. ExPASy TrEMBL
Match: A0A6J1EHH7 (60S ribosomal protein L18a-like protein OS=Cucurbita moschata OX=3662 GN=LOC111434348 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 4.5e-63
Identity = 119/140 (85.00%), Postives = 125/140 (89.29%), Query Frame = 0


Query: 1   MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGP 60
           MSGDGK+SAV GDPQSQYHYGTFQGVANYY SA +PQPQP P SVVGFP  VAPPR    
Sbjct: 1   MSGDGKSSAVFGDPQSQYHYGTFQGVANYYSSAPEPQPQPHPQSVVGFPPQVAPPR---- 60

Query: 61  HPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGWFLFVIGFFLGGIPWYVGAFI 120
           HP YHGHL YQAVPVQGYAIIEGRP+ EARLPCCGIGMGWFLF+IGFFLGGIPWYVGAF+
Sbjct: 61  HPCYHGHLDYQAVPVQGYAIIEGRPFHEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFV 120

Query: 121 VLFVRVDYREKPGYVACVIA 141
           VLFVRVDYREKPGY+AC IA
Sbjct: 121 VLFVRVDYREKPGYIACAIA 136

[Close]

BLAST of MS013503.1 vs. ExPASy TrEMBL
Match: A0A6J1KIR0 (60S ribosomal protein L18a-like protein OS=Cucurbita maxima OX=3661 GN=LOC111495603 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.2e-62
Identity = 119/140 (85.00%), Postives = 124/140 (88.57%), Query Frame = 0


Query: 1   MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGP 60
           MS DGK+SAV GDPQSQYHYGTFQGVANYY SA QPQPQP P SVVGFP  VAPPR    
Sbjct: 1   MSCDGKSSAVFGDPQSQYHYGTFQGVANYYSSAPQPQPQPHPQSVVGFPPQVAPPR---- 60

Query: 61  HPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGWFLFVIGFFLGGIPWYVGAFI 120
           HP YHGHL YQAVPVQGYAIIEGRP+ EARLPCCGIGMGWFLF+IGFFLGGIPWYVGAF+
Sbjct: 61  HPCYHGHLDYQAVPVQGYAIIEGRPFHEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFV 120

Query: 121 VLFVRVDYREKPGYVACVIA 141
           VLFVRVDYREKPGY+AC IA
Sbjct: 121 VLFVRVDYREKPGYIACAIA 136

[Close]

BLAST of MS013503.1 vs. TAIR 10
Match: AT1G17080.1 (Ribosomal protein L18ae family )

HSP 1 Score: 146.0 bits (367), Expect = 2.3e-35
Identity = 78/139 (56.12%), Postives = 95/139 (68.35%), Query Frame = 0


Query: 4   DGKNSAVLGDPQSQYH-YGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHP 63
           + K+     +  +Q+H YGTFQGV+NY      P PQ     V GFPQP APP V     
Sbjct: 6   EDKSKGFASEEGNQHHQYGTFQGVSNY------PPPQ-NSAPVTGFPQPSAPPGVYDSGA 65

Query: 64  YYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGWFLFVIGFFLGGIPWYVGAFIVL 123
            Y+ H GYQ VPV G  + EGRP ++ RLPCCGIG+GWFLF++GFFLG IPWYVG FI++
Sbjct: 66  PYYAH-GYQTVPVHG-GVAEGRPVRQRRLPCCGIGLGWFLFIVGFFLGAIPWYVGLFIMM 125

Query: 124 F-VRVDYREKPGYVACVIA 141
           F  R+DYREKPGY+AC IA
Sbjct: 126 FGRRIDYREKPGYIACTIA 135

[Close]

BLAST of MS013503.1 vs. TAIR 10
Match: AT1G53560.1 (Ribosomal protein L18ae family )

HSP 1 Score: 129.8 bits (325), Expect = 1.7e-30
Identity = 69/122 (56.56%), Postives = 80/122 (65.57%), Query Frame = 0


Query: 20  YGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYHGHLGYQA-VPVQGY 79
           YGTFQGV   YP  S P P P  H V+G PQP  PP    PH     H   Q    V GY
Sbjct: 16  YGTFQGVPT-YPPPSYPHP-PSHHPVIGIPQPSPPP--GSPHHDISVHQYIQEHQTVAGY 75

Query: 80  AIIEGRPYQEARLPCCGIGMGWFLFVIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACV 139
            + +GRP ++ RLPCCG+G+GWFLF+IGF LG IPWYVG FI++  R+D REKPGYVAC 
Sbjct: 76  PVSQGRPARQNRLPCCGLGLGWFLFIIGFLLGAIPWYVGVFILVCARIDPREKPGYVACT 133

Query: 140 IA 141
           IA
Sbjct: 136 IA 133

[Close]

BLAST of MS013503.1 vs. TAIR 10
Match: AT1G29970.1 (60S ribosomal protein L18A-1 )

HSP 1 Score: 120.6 bits (301), Expect = 1.0e-27
Identity = 71/134 (52.99%), Postives = 81/134 (60.45%), Query Frame = 0


Query: 15  QSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYH--GHLG--- 74
           Q QY+YGTFQGVAN+      P P P P     F QP  P      H Y +  GH G   
Sbjct: 16  QHQYYYGTFQGVANF------PTPTPPPQ----FMQPQHPITTFPGHAYQNLQGHGGGVN 75

Query: 75  -YQAVP--VQGYAIIEGRPYQEARLPCCGIGMGWFLFVIGFFLGGIPWYVGAFIVLFVRV 134
             Q  P  V  Y ++E RP  E  LPCCG+GMGWFLF++GF  GGIPWY+GAFIVL   V
Sbjct: 76  YAQGFPVVVPDYTVVEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSV 135

Query: 135 DYREKPGYVACVIA 141
           D+REK GYVAC IA
Sbjct: 136 DHREKAGYVACSIA 139

[Close]

BLAST of MS013503.1 vs. TAIR 10
Match: AT1G29970.2 (60S ribosomal protein L18A-1 )

HSP 1 Score: 120.6 bits (301), Expect = 1.0e-27
Identity = 71/134 (52.99%), Postives = 81/134 (60.45%), Query Frame = 0


Query: 15  QSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYH--GHLG--- 74
           Q QY+YGTFQGVAN+      P P P P     F QP  P      H Y +  GH G   
Sbjct: 16  QHQYYYGTFQGVANF------PTPTPPPQ----FMQPQHPITTFPGHAYQNLQGHGGGVN 75

Query: 75  -YQAVP--VQGYAIIEGRPYQEARLPCCGIGMGWFLFVIGFFLGGIPWYVGAFIVLFVRV 134
             Q  P  V  Y ++E RP  E  LPCCG+GMGWFLF++GF  GGIPWY+GAFIVL   V
Sbjct: 76  YAQGFPVVVPDYTVVEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSV 135

Query: 135 DYREKPGYVACVIA 141
           D+REK GYVAC IA
Sbjct: 136 DHREKAGYVACSIA 139

[Close]

BLAST of MS013503.1 vs. TAIR 10
Match: AT1G29970.3 (60S ribosomal protein L18A-1 )

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-21
Identity = 71/176 (40.34%), Postives = 81/176 (46.02%), Query Frame = 0


Query: 15  QSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYH--GHLG--- 74
           Q QY+YGTFQGVAN+      P P P P     F QP  P      H Y +  GH G   
Sbjct: 16  QHQYYYGTFQGVANF------PTPTPPPQ----FMQPQHPITTFPGHAYQNLQGHGGGVN 75

Query: 75  -YQAVP--VQGYAIIEGRPYQEARLPCCGIGMGWFL------------------------ 134
             Q  P  V  Y ++E RP  E  LPCCG+GMGWFL                        
Sbjct: 76  YAQGFPVVVPDYTVVEVRPMIEHELPCCGLGMGWFLSKLQKLRFMVVGNSSLLSWNLFVS 135

Query: 135 ------------------FVIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACVIA 141
                             F++GF  GGIPWY+GAFIVL   VD+REK GYVAC IA
Sbjct: 136 SEILDELIASWNQYKKSVFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVACSIA 181

The following BLAST results are available for this feature:

BLAST of MS013503.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140257.1	8.7e-77	100.00	60S ribosomal protein L18a-like protein [Momordica charantia]	[more]
XP_008444018.1	3.1e-66	88.57	PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo]	[more]
XP_004147407.1	5.8e-65	87.14	60S ribosomal protein L18a-like protein [Cucumis sativus] >KGN65566.1 hypothetic...	[more]
XP_022927552.1	9.3e-63	85.00	60S ribosomal protein L18a-like protein [Cucurbita moschata] >KAG6583922.1 60S r...	[more]
XP_023519744.1	2.7e-62	85.00	60S ribosomal protein L18a-like protein [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS013503.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9S1	1.5e-26	52.99	60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g2...	[more]

BLAST of MS013503.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CGC1	4.2e-77	100.00	60S ribosomal protein L18a-like protein OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A1S3B9D9	1.5e-66	88.57	60S ribosomal protein L18a-like protein OS=Cucumis melo OX=3656 GN=LOC103487462 ...	[more]
A0A0A0M051	2.8e-65	87.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G448970 PE=4 SV=1	[more]
A0A6J1EHH7	4.5e-63	85.00	60S ribosomal protein L18a-like protein OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1KIR0	2.2e-62	85.00	60S ribosomal protein L18a-like protein OS=Cucurbita maxima OX=3661 GN=LOC111495...	[more]

BLAST of MS013503.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G17080.1	2.3e-35	56.12	Ribosomal protein L18ae family	[more]
AT1G53560.1	1.7e-30	56.56	Ribosomal protein L18ae family	[more]
AT1G29970.1	1.0e-27	52.99	60S ribosomal protein L18A-1	[more]
AT1G29970.2	1.0e-27	52.99	60S ribosomal protein L18A-1	[more]
AT1G29970.3	1.5e-21	40.34	60S ribosomal protein L18A-1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..53
None	No IPR available	PANTHER	PTHR46631:SF20	60S RIBOSOMAL PROTEIN L18A-LIKE PROTEIN	coord: 1..140
IPR044804	AT1G29970-like	PANTHER	PTHR46631	60S RIBOSOMAL PROTEIN L18A-LIKE	coord: 1..140

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS013503	MS013503	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS013503.1-cds	MS013503.1-cds-scaffold402:2025185..2025407	CDS
MS013503.1-cds	MS013503.1-cds-scaffold402:2027577..2027658	CDS
MS013503.1-cds	MS013503.1-cds-scaffold402:2027749..2027863	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS013503.1	MS013503.1-protein	polypeptide