MS012953.1 (mRNA) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.GGAATGAAGAAGCACAAAAGGTTGGCAATGGAGTTCTCAATGAAAGAAAAAGAGAAATTGATGAGCTATGAGGAAAATGAGGTTGGAGAAGACATGGTAGTGATGGATTACGCACAACCCCATAGGAAGCCTCCAATTCACAATAAAAAACCC GGAATGAAGAAGCACAAAAGGTTGGCAATGGAGTTCTCAATGAAAGAAAAAGAGAAATTGATGAGCTATGAGGAAAATGAGGTTGGAGAAGACATGGTAGTGATGGATTACGCACAACCCCATAGGAAGCCTCCAATTCACAATAAAAAACCC GGAATGAAGAAGCACAAAAGGTTGGCAATGGAGTTCTCAATGAAAGAAAAAGAGAAATTGATGAGCTATGAGGAAAATGAGGTTGGAGAAGACATGGTAGTGATGGATTACGCACAACCCCATAGGAAGCCTCCAATTCACAATAAAAAACCC GMKKHKRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP Homology
BLAST of MS012953.1 vs. NCBI nr
Match: XP_022154042.1 (uncharacterized protein LOC111021396 [Momordica charantia]) HSP 1 Score: 104.4 bits (259), Expect = 3.0e-19 Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0
BLAST of MS012953.1 vs. NCBI nr
Match: XP_038905997.1 (uncharacterized protein LOC120091906 isoform X2 [Benincasa hispida]) HSP 1 Score: 76.3 bits (186), Expect = 8.8e-11 Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = 0
BLAST of MS012953.1 vs. NCBI nr
Match: XP_038905996.1 (uncharacterized protein LOC120091906 isoform X1 [Benincasa hispida]) HSP 1 Score: 76.3 bits (186), Expect = 8.8e-11 Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = 0
BLAST of MS012953.1 vs. NCBI nr
Match: XP_023540680.1 (uncharacterized protein LOC111800973 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 73.2 bits (178), Expect = 7.4e-10 Identity = 37/57 (64.91%), Postives = 47/57 (82.46%), Query Frame = 0
BLAST of MS012953.1 vs. NCBI nr
Match: XP_023005579.1 (uncharacterized protein LOC111498521 [Cucurbita maxima]) HSP 1 Score: 72.8 bits (177), Expect = 9.7e-10 Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = 0
BLAST of MS012953.1 vs. ExPASy Swiss-Prot
Match: Q93VK8 (Protein GOLVEN 1 OS=Arabidopsis thaliana OX=3702 GN=GLV1 PE=1 SV=1) HSP 1 Score: 46.6 bits (109), Expect = 9.8e-05 Identity = 19/24 (79.17%), Postives = 22/24 (91.67%), Query Frame = 0
BLAST of MS012953.1 vs. ExPASy TrEMBL
Match: A0A6J1DKL1 (uncharacterized protein LOC111021396 OS=Momordica charantia OX=3673 GN=LOC111021396 PE=4 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 1.5e-19 Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0
BLAST of MS012953.1 vs. ExPASy TrEMBL
Match: A0A6J1KZM9 (uncharacterized protein LOC111498521 OS=Cucurbita maxima OX=3661 GN=LOC111498521 PE=4 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 4.7e-10 Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = 0
BLAST of MS012953.1 vs. ExPASy TrEMBL
Match: A0A0A0L298 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G020610 PE=4 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 4.7e-10 Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 0
BLAST of MS012953.1 vs. ExPASy TrEMBL
Match: A0A5B7BC15 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_035167 PE=4 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 1.6e-05 Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 0
BLAST of MS012953.1 vs. ExPASy TrEMBL
Match: A0A5J4ZYW1 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_012910 PE=4 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 1.6e-05 Identity = 27/51 (52.94%), Postives = 38/51 (74.51%), Query Frame = 0
BLAST of MS012953.1 vs. TAIR 10
Match: AT4G16515.1 (Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9). ) HSP 1 Score: 46.6 bits (109), Expect = 6.9e-06 Identity = 19/24 (79.17%), Postives = 22/24 (91.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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