MS012319 (gene) Bitter gourd (TR) v1

Overview
NameMS012319
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein Ycf2-like
Locationscaffold317: 282648 .. 283038 (-)
RNA-Seq ExpressionMS012319
SyntenyMS012319
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGGGATTAAGGATTTTGCAGTAGTTATTAGCCTAAATTGTGGACCTGTAACACAATTAGACATAGACGCGATGAAAGGTAAAGGCATATAATGAATATGTATTTTGATGGTGAACGGTTTGTTACAAGGAAATACATAGATTTGGCATTTAAAGTGAGTAAGAATGGAACAAACGACGATATGGTAAAGATAGCGCTATTGTATTGTTTAGAAAGCTTTATTCTACCATATCAAGATTCTGTTCATGTTAAAATGGATCGTATCCTTTTTAATAGCTATCCTTGGGTAGGGCAGCATTTGATCTATTGATAAACTCTATGAAAAAGGAAATTGGGAGTCGAGGAAAGAAAGGTATTGGAATAGGCAACTTCATTCATGCACTATTGATT

mRNA sequence

TTTGGGATTAAGGATTTTGCAGTAGTTATTAGCCTAAATTGTGGACCTGTAACACAATTAGACATAGACGCGATGAAAGGTAAAGGCATAATGAATATGTATTTTGATGGTGAACGGTTTGTTACAAGGAAATACATAGATTTGGCATTTAAAGTGAGTAAGAATGGAACAAACGACGATATGGTAAAGATAGCGCTATTGTATTGTTTAGAAAGCTTTATTCTACCATATCAAGATTCTGTTCATGTTAAAATGGATCGTATCCTTTTTAATAGCTATCCTTGGAGGGCAGCATTTGATCTATTGATAAACTCTATGAAAAAGGAAATTGGGAGTCGAGGAAAGAAAGGTATTGGAATAGGCAACTTCATTCATGCACTATTGATT

Coding sequence (CDS)

TTTGGGATTAAGGATTTTGCAGTAGTTATTAGCCTAAATTGTGGACCTGTAACACAATTAGACATAGACGCGATGAAAGGTAAAGGCATAATGAATATGTATTTTGATGGTGAACGGTTTGTTACAAGGAAATACATAGATTTGGCATTTAAAGTGAGTAAGAATGGAACAAACGACGATATGGTAAAGATAGCGCTATTGTATTGTTTAGAAAGCTTTATTCTACCATATCAAGATTCTGTTCATGTTAAAATGGATCGTATCCTTTTTAATAGCTATCCTTGGAGGGCAGCATTTGATCTATTGATAAACTCTATGAAAAAGGAAATTGGGAGTCGAGGAAAGAAAGGTATTGGAATAGGCAACTTCATTCATGCACTATTGATT

Protein sequence

FGIKDFAVVISLNCGPVTQLDIDAMKGKGIMNMYFDGERFVTRKYIDLAFKVSKNGTNDDMVKIALLYCLESFILPYQDSVHVKMDRILFNSYPWRAAFDLLINSMKKEIGSRGKKGIGIGNFIHALLI
Homology
BLAST of MS012319 vs. NCBI nr
Match: KAA0040869.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-20
Identity = 51/137 (37.23%), Postives = 90/137 (65.69%), Query Frame = 0

Query: 1   FGIKDFAVVISLNCGPVTQLDIDAMKGKG-IMNMYFDGERFVTRKYIDLAFKVSKNGTND 60
           FG+++FA++  L C  ++ ++ + +KG G +  +YF+  + VTR+Y+++ F +S   T+D
Sbjct: 21  FGLREFALITGLRCHEISDINHEDIKGGGWLKGVYFENLKTVTRQYLNVMFNISTARTDD 80

Query: 61  DMVKIALLYCLESFILPYQDSVHVKMDRIL-------FNSYPW-RAAFDLLINSMKKEIG 120
           D +K+A LY LESF++P Q+ ++V  D I+       F+ YPW R AF+LL++ M + + 
Sbjct: 81  DRIKMAKLYFLESFLIPKQECLNVDWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVC 140

Query: 121 SRGKKGIGIGNFIHALL 129
           S+G+ GI +G FI  +L
Sbjct: 141 SKGQTGISMGGFIFPIL 157

BLAST of MS012319 vs. NCBI nr
Match: KAA0048427.1 (hypothetical protein E6C27_scaffold61G00010 [Cucumis melo var. makuwa] >TYK28223.1 hypothetical protein E5676_scaffold600G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 109.8 bits (273), Expect = 1.8e-20
Identity = 50/135 (37.04%), Postives = 87/135 (64.44%), Query Frame = 0

Query: 1   FGIKDFAVVISLNCGPVTQLDIDAMKGKGIMNMYFDGERFVTRKYIDLAFKVSKNGTNDD 60
           FG+++F+++  L C  ++ +  +  KG G + +YF+  + VTR+Y+++ F +S  GT+DD
Sbjct: 181 FGLREFSLITGLKCHEISDIP-ERYKGGGRLKVYFENLKIVTRQYLNVMFNISTAGTDDD 240

Query: 61  MVKIALLYCLESFILPYQDSVHVKMDRI-------LFNSYPW-RAAFDLLINSMKKEIGS 120
            +K+  LY LESF++P Q+SV ++ D I       LF+ YPW R AF+LL+  M + + S
Sbjct: 241 RIKMTKLYFLESFLIPKQESVSIEWDHIIMVDDDKLFDGYPWSRVAFELLVEFMSRVVCS 300

Query: 121 RGKKGIGIGNFIHAL 128
           +G+ GI +  FI ++
Sbjct: 301 KGQTGISMDGFIFSI 314

BLAST of MS012319 vs. NCBI nr
Match: KAA0047596.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 3.1e-20
Identity = 51/137 (37.23%), Postives = 87/137 (63.50%), Query Frame = 0

Query: 1   FGIKDFAVVISLNCGPVTQLDIDAMKGKG-IMNMYFDGERFVTRKYIDLAFKVSKNGTND 60
           FG+++FA++  L C  +  ++ + + G G +  +YF+  + VTR+Y+++ F +S  GT+D
Sbjct: 252 FGLREFALITGLRCHEIPDINHEDINGGGRLKGVYFENLKTVTRQYLNVMFNISTTGTDD 311

Query: 61  DMVKIALLYCLESFILPYQDSVHVKMDRIL-------FNSYPW-RAAFDLLINSMKKEIG 120
           D +K+A LY LESF++P Q+   V  D I+       F+ YPW R AF+LL++ M + + 
Sbjct: 312 DRIKMAKLYFLESFLIPKQECPSVDWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRVVC 371

Query: 121 SRGKKGIGIGNFIHALL 129
           S+G+ GI +G FI  +L
Sbjct: 372 SKGQTGISMGGFIFPIL 388

BLAST of MS012319 vs. NCBI nr
Match: TYK09852.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 2.0e-19
Identity = 52/138 (37.68%), Postives = 89/138 (64.49%), Query Frame = 0

Query: 1   FGIKDFAVVISLNCGPVTQLDIDAMKGKGIMN-MYFDGERFVTRKYIDLAFKVSKNGTND 60
           FG+++FA++  L C  +  ++ + +KG G +  +YF+  + VTR+Y+++ F +S  GT+D
Sbjct: 21  FGLREFALITGLRCHEIPNINHEDIKGGGRLKWVYFENLKTVTRQYLNVMFNISTAGTDD 80

Query: 61  DMVKIALLYCLESFILPYQDSVHVKMDRIL-------FNSYPW-RAAFDLLINSMKKEIG 120
           D +K+A LY LESF++P Q+ + V  D I+       F+ YPW R AF+LL++ M + + 
Sbjct: 81  DRIKMAKLYFLESFLIPKQECLSVDWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVC 140

Query: 121 SRGKKGIGI-GNFIHALL 129
           S+G+ GI + G FI  +L
Sbjct: 141 SKGQTGISMGGGFIFPIL 158

BLAST of MS012319 vs. NCBI nr
Match: TYK23840.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 105.1 bits (261), Expect = 4.5e-19
Identity = 51/137 (37.23%), Postives = 86/137 (62.77%), Query Frame = 0

Query: 1   FGIKDFAVVISLNCGPVTQLDIDAMKGKG-IMNMYFDGERFVTRKYIDLAFKVSKNGTND 60
           FG+++FA++  L C  +  ++ D +KG G +  +YF+  + V R+Y+++ F +S   T+D
Sbjct: 21  FGLREFALITGLKCHEIPYINHDDIKGGGRLKGVYFENLKTVMRQYLNVMFNISTARTDD 80

Query: 61  DMVKIALLYCLESFILPYQDSVHVKMDRIL-------FNSYPW-RAAFDLLINSMKKEIG 120
           D +K+A LY LESF++P Q+ + V  D I+       F+ YPW R AF+LL++ M + + 
Sbjct: 81  DRIKMAKLYFLESFLIPKQECLSVDWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRVVC 140

Query: 121 SRGKKGIGIGNFIHALL 129
           S+G+ GI I  FI  +L
Sbjct: 141 SKGQTGISIWGFIFLIL 157

BLAST of MS012319 vs. ExPASy TrEMBL
Match: A0A5A7THT9 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold345G00190 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 6.7e-21
Identity = 51/137 (37.23%), Postives = 90/137 (65.69%), Query Frame = 0

Query: 1   FGIKDFAVVISLNCGPVTQLDIDAMKGKG-IMNMYFDGERFVTRKYIDLAFKVSKNGTND 60
           FG+++FA++  L C  ++ ++ + +KG G +  +YF+  + VTR+Y+++ F +S   T+D
Sbjct: 21  FGLREFALITGLRCHEISDINHEDIKGGGWLKGVYFENLKTVTRQYLNVMFNISTARTDD 80

Query: 61  DMVKIALLYCLESFILPYQDSVHVKMDRIL-------FNSYPW-RAAFDLLINSMKKEIG 120
           D +K+A LY LESF++P Q+ ++V  D I+       F+ YPW R AF+LL++ M + + 
Sbjct: 81  DRIKMAKLYFLESFLIPKQECLNVDWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVC 140

Query: 121 SRGKKGIGIGNFIHALL 129
           S+G+ GI +G FI  +L
Sbjct: 141 SKGQTGISMGGFIFPIL 157

BLAST of MS012319 vs. ExPASy TrEMBL
Match: A0A5D3DX05 (DUF1985 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G00010 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 8.8e-21
Identity = 50/135 (37.04%), Postives = 87/135 (64.44%), Query Frame = 0

Query: 1   FGIKDFAVVISLNCGPVTQLDIDAMKGKGIMNMYFDGERFVTRKYIDLAFKVSKNGTNDD 60
           FG+++F+++  L C  ++ +  +  KG G + +YF+  + VTR+Y+++ F +S  GT+DD
Sbjct: 181 FGLREFSLITGLKCHEISDIP-ERYKGGGRLKVYFENLKIVTRQYLNVMFNISTAGTDDD 240

Query: 61  MVKIALLYCLESFILPYQDSVHVKMDRI-------LFNSYPW-RAAFDLLINSMKKEIGS 120
            +K+  LY LESF++P Q+SV ++ D I       LF+ YPW R AF+LL+  M + + S
Sbjct: 241 RIKMTKLYFLESFLIPKQESVSIEWDHIIMVDDDKLFDGYPWSRVAFELLVEFMSRVVCS 300

Query: 121 RGKKGIGIGNFIHAL 128
           +G+ GI +  FI ++
Sbjct: 301 KGQTGISMDGFIFSI 314

BLAST of MS012319 vs. ExPASy TrEMBL
Match: A0A5A7U047 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G00640 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.5e-20
Identity = 51/137 (37.23%), Postives = 87/137 (63.50%), Query Frame = 0

Query: 1   FGIKDFAVVISLNCGPVTQLDIDAMKGKG-IMNMYFDGERFVTRKYIDLAFKVSKNGTND 60
           FG+++FA++  L C  +  ++ + + G G +  +YF+  + VTR+Y+++ F +S  GT+D
Sbjct: 252 FGLREFALITGLRCHEIPDINHEDINGGGRLKGVYFENLKTVTRQYLNVMFNISTTGTDD 311

Query: 61  DMVKIALLYCLESFILPYQDSVHVKMDRIL-------FNSYPW-RAAFDLLINSMKKEIG 120
           D +K+A LY LESF++P Q+   V  D I+       F+ YPW R AF+LL++ M + + 
Sbjct: 312 DRIKMAKLYFLESFLIPKQECPSVDWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRVVC 371

Query: 121 SRGKKGIGIGNFIHALL 129
           S+G+ GI +G FI  +L
Sbjct: 372 SKGQTGISMGGFIFPIL 388

BLAST of MS012319 vs. ExPASy TrEMBL
Match: A0A5D3CEX9 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00200 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 9.7e-20
Identity = 52/138 (37.68%), Postives = 89/138 (64.49%), Query Frame = 0

Query: 1   FGIKDFAVVISLNCGPVTQLDIDAMKGKGIMN-MYFDGERFVTRKYIDLAFKVSKNGTND 60
           FG+++FA++  L C  +  ++ + +KG G +  +YF+  + VTR+Y+++ F +S  GT+D
Sbjct: 21  FGLREFALITGLRCHEIPNINHEDIKGGGRLKWVYFENLKTVTRQYLNVMFNISTAGTDD 80

Query: 61  DMVKIALLYCLESFILPYQDSVHVKMDRIL-------FNSYPW-RAAFDLLINSMKKEIG 120
           D +K+A LY LESF++P Q+ + V  D I+       F+ YPW R AF+LL++ M + + 
Sbjct: 81  DRIKMAKLYFLESFLIPKQECLSVDWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVC 140

Query: 121 SRGKKGIGI-GNFIHALL 129
           S+G+ GI + G FI  +L
Sbjct: 141 SKGQTGISMGGGFIFPIL 158

BLAST of MS012319 vs. ExPASy TrEMBL
Match: A0A5A7U6E1 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001210 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.2e-19
Identity = 51/137 (37.23%), Postives = 86/137 (62.77%), Query Frame = 0

Query: 1   FGIKDFAVVISLNCGPVTQLDIDAMKGKG-IMNMYFDGERFVTRKYIDLAFKVSKNGTND 60
           FG+++FA++  L C  +  ++ D +KG G +  +YF+  + V R+Y+++ F +S   T+D
Sbjct: 21  FGLREFALITGLKCHEIPYINHDDIKGGGRLKGVYFENLKTVMRQYLNVMFNISTARTDD 80

Query: 61  DMVKIALLYCLESFILPYQDSVHVKMDRIL-------FNSYPW-RAAFDLLINSMKKEIG 120
           D +K+A LY LESF++P Q+ + V  D I+       F+ YPW R AF+LL++ M + + 
Sbjct: 81  DRIKMAKLYFLESFLIPKQECLSVDWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRVVC 140

Query: 121 SRGKKGIGIGNFIHALL 129
           S+G+ GI I  FI  +L
Sbjct: 141 SKGQTGISIWGFIFLIL 157

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0040869.11.4e-2037.23protein Ycf2-like [Cucumis melo var. makuwa][more]
KAA0048427.11.8e-2037.04hypothetical protein E6C27_scaffold61G00010 [Cucumis melo var. makuwa] >TYK28223... [more]
KAA0047596.13.1e-2037.23protein Ycf2-like [Cucumis melo var. makuwa][more]
TYK09852.12.0e-1937.68protein Ycf2-like [Cucumis melo var. makuwa][more]
TYK23840.14.5e-1937.23protein Ycf2-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7THT96.7e-2137.23Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold345G00... [more]
A0A5D3DX058.8e-2137.04DUF1985 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7U0471.5e-2037.23Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G00... [more]
A0A5D3CEX99.7e-2037.68Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G002... [more]
A0A5A7U6E12.2e-1937.23Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 125..129
IPR015410Domain of unknown function DUF1985PFAMPF09331DUF1985coord: 1..104
e-value: 3.8E-10
score: 39.9

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS012319.1MS012319.1mRNA