Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGGGATTAAGGATTTTGCAGTAGTTATTAGCCTAAATTGTGGACCTGTAACACAATTAGACATAGACGCGATGAAAGGTAAAGGCATATAATGAATATGTATTTTGATGGTGAACGGTTTGTTACAAGGAAATACATAGATTTGGCATTTAAAGTGAGTAAGAATGGAACAAACGACGATATGGTAAAGATAGCGCTATTGTATTGTTTAGAAAGCTTTATTCTACCATATCAAGATTCTGTTCATGTTAAAATGGATCGTATCCTTTTTAATAGCTATCCTTGGGTAGGGCAGCATTTGATCTATTGATAAACTCTATGAAAAAGGAAATTGGGAGTCGAGGAAAGAAAGGTATTGGAATAGGCAACTTCATTCATGCACTATTGATT
mRNA sequence
TTTGGGATTAAGGATTTTGCAGTAGTTATTAGCCTAAATTGTGGACCTGTAACACAATTAGACATAGACGCGATGAAAGGTAAAGGCATAATGAATATGTATTTTGATGGTGAACGGTTTGTTACAAGGAAATACATAGATTTGGCATTTAAAGTGAGTAAGAATGGAACAAACGACGATATGGTAAAGATAGCGCTATTGTATTGTTTAGAAAGCTTTATTCTACCATATCAAGATTCTGTTCATGTTAAAATGGATCGTATCCTTTTTAATAGCTATCCTTGGAGGGCAGCATTTGATCTATTGATAAACTCTATGAAAAAGGAAATTGGGAGTCGAGGAAAGAAAGGTATTGGAATAGGCAACTTCATTCATGCACTATTGATT
Coding sequence (CDS)
TTTGGGATTAAGGATTTTGCAGTAGTTATTAGCCTAAATTGTGGACCTGTAACACAATTAGACATAGACGCGATGAAAGGTAAAGGCATAATGAATATGTATTTTGATGGTGAACGGTTTGTTACAAGGAAATACATAGATTTGGCATTTAAAGTGAGTAAGAATGGAACAAACGACGATATGGTAAAGATAGCGCTATTGTATTGTTTAGAAAGCTTTATTCTACCATATCAAGATTCTGTTCATGTTAAAATGGATCGTATCCTTTTTAATAGCTATCCTTGGAGGGCAGCATTTGATCTATTGATAAACTCTATGAAAAAGGAAATTGGGAGTCGAGGAAAGAAAGGTATTGGAATAGGCAACTTCATTCATGCACTATTGATT
Protein sequence
FGIKDFAVVISLNCGPVTQLDIDAMKGKGIMNMYFDGERFVTRKYIDLAFKVSKNGTNDDMVKIALLYCLESFILPYQDSVHVKMDRILFNSYPWRAAFDLLINSMKKEIGSRGKKGIGIGNFIHALLI
Homology
BLAST of MS012319 vs. NCBI nr
Match:
KAA0040869.1 (protein Ycf2-like [Cucumis melo var. makuwa])
HSP 1 Score: 110.2 bits (274), Expect = 1.4e-20
Identity = 51/137 (37.23%), Postives = 90/137 (65.69%), Query Frame = 0
Query: 1 FGIKDFAVVISLNCGPVTQLDIDAMKGKG-IMNMYFDGERFVTRKYIDLAFKVSKNGTND 60
FG+++FA++ L C ++ ++ + +KG G + +YF+ + VTR+Y+++ F +S T+D
Sbjct: 21 FGLREFALITGLRCHEISDINHEDIKGGGWLKGVYFENLKTVTRQYLNVMFNISTARTDD 80
Query: 61 DMVKIALLYCLESFILPYQDSVHVKMDRIL-------FNSYPW-RAAFDLLINSMKKEIG 120
D +K+A LY LESF++P Q+ ++V D I+ F+ YPW R AF+LL++ M + +
Sbjct: 81 DRIKMAKLYFLESFLIPKQECLNVDWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVC 140
Query: 121 SRGKKGIGIGNFIHALL 129
S+G+ GI +G FI +L
Sbjct: 141 SKGQTGISMGGFIFPIL 157
BLAST of MS012319 vs. NCBI nr
Match:
KAA0048427.1 (hypothetical protein E6C27_scaffold61G00010 [Cucumis melo var. makuwa] >TYK28223.1 hypothetical protein E5676_scaffold600G00010 [Cucumis melo var. makuwa])
HSP 1 Score: 109.8 bits (273), Expect = 1.8e-20
Identity = 50/135 (37.04%), Postives = 87/135 (64.44%), Query Frame = 0
Query: 1 FGIKDFAVVISLNCGPVTQLDIDAMKGKGIMNMYFDGERFVTRKYIDLAFKVSKNGTNDD 60
FG+++F+++ L C ++ + + KG G + +YF+ + VTR+Y+++ F +S GT+DD
Sbjct: 181 FGLREFSLITGLKCHEISDIP-ERYKGGGRLKVYFENLKIVTRQYLNVMFNISTAGTDDD 240
Query: 61 MVKIALLYCLESFILPYQDSVHVKMDRI-------LFNSYPW-RAAFDLLINSMKKEIGS 120
+K+ LY LESF++P Q+SV ++ D I LF+ YPW R AF+LL+ M + + S
Sbjct: 241 RIKMTKLYFLESFLIPKQESVSIEWDHIIMVDDDKLFDGYPWSRVAFELLVEFMSRVVCS 300
Query: 121 RGKKGIGIGNFIHAL 128
+G+ GI + FI ++
Sbjct: 301 KGQTGISMDGFIFSI 314
BLAST of MS012319 vs. NCBI nr
Match:
KAA0047596.1 (protein Ycf2-like [Cucumis melo var. makuwa])
HSP 1 Score: 109.0 bits (271), Expect = 3.1e-20
Identity = 51/137 (37.23%), Postives = 87/137 (63.50%), Query Frame = 0
Query: 1 FGIKDFAVVISLNCGPVTQLDIDAMKGKG-IMNMYFDGERFVTRKYIDLAFKVSKNGTND 60
FG+++FA++ L C + ++ + + G G + +YF+ + VTR+Y+++ F +S GT+D
Sbjct: 252 FGLREFALITGLRCHEIPDINHEDINGGGRLKGVYFENLKTVTRQYLNVMFNISTTGTDD 311
Query: 61 DMVKIALLYCLESFILPYQDSVHVKMDRIL-------FNSYPW-RAAFDLLINSMKKEIG 120
D +K+A LY LESF++P Q+ V D I+ F+ YPW R AF+LL++ M + +
Sbjct: 312 DRIKMAKLYFLESFLIPKQECPSVDWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRVVC 371
Query: 121 SRGKKGIGIGNFIHALL 129
S+G+ GI +G FI +L
Sbjct: 372 SKGQTGISMGGFIFPIL 388
BLAST of MS012319 vs. NCBI nr
Match:
TYK09852.1 (protein Ycf2-like [Cucumis melo var. makuwa])
HSP 1 Score: 106.3 bits (264), Expect = 2.0e-19
Identity = 52/138 (37.68%), Postives = 89/138 (64.49%), Query Frame = 0
Query: 1 FGIKDFAVVISLNCGPVTQLDIDAMKGKGIMN-MYFDGERFVTRKYIDLAFKVSKNGTND 60
FG+++FA++ L C + ++ + +KG G + +YF+ + VTR+Y+++ F +S GT+D
Sbjct: 21 FGLREFALITGLRCHEIPNINHEDIKGGGRLKWVYFENLKTVTRQYLNVMFNISTAGTDD 80
Query: 61 DMVKIALLYCLESFILPYQDSVHVKMDRIL-------FNSYPW-RAAFDLLINSMKKEIG 120
D +K+A LY LESF++P Q+ + V D I+ F+ YPW R AF+LL++ M + +
Sbjct: 81 DRIKMAKLYFLESFLIPKQECLSVDWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVC 140
Query: 121 SRGKKGIGI-GNFIHALL 129
S+G+ GI + G FI +L
Sbjct: 141 SKGQTGISMGGGFIFPIL 158
BLAST of MS012319 vs. NCBI nr
Match:
TYK23840.1 (protein Ycf2-like [Cucumis melo var. makuwa])
HSP 1 Score: 105.1 bits (261), Expect = 4.5e-19
Identity = 51/137 (37.23%), Postives = 86/137 (62.77%), Query Frame = 0
Query: 1 FGIKDFAVVISLNCGPVTQLDIDAMKGKG-IMNMYFDGERFVTRKYIDLAFKVSKNGTND 60
FG+++FA++ L C + ++ D +KG G + +YF+ + V R+Y+++ F +S T+D
Sbjct: 21 FGLREFALITGLKCHEIPYINHDDIKGGGRLKGVYFENLKTVMRQYLNVMFNISTARTDD 80
Query: 61 DMVKIALLYCLESFILPYQDSVHVKMDRIL-------FNSYPW-RAAFDLLINSMKKEIG 120
D +K+A LY LESF++P Q+ + V D I+ F+ YPW R AF+LL++ M + +
Sbjct: 81 DRIKMAKLYFLESFLIPKQECLSVDWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRVVC 140
Query: 121 SRGKKGIGIGNFIHALL 129
S+G+ GI I FI +L
Sbjct: 141 SKGQTGISIWGFIFLIL 157
BLAST of MS012319 vs. ExPASy TrEMBL
Match:
A0A5A7THT9 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold345G00190 PE=4 SV=1)
HSP 1 Score: 110.2 bits (274), Expect = 6.7e-21
Identity = 51/137 (37.23%), Postives = 90/137 (65.69%), Query Frame = 0
Query: 1 FGIKDFAVVISLNCGPVTQLDIDAMKGKG-IMNMYFDGERFVTRKYIDLAFKVSKNGTND 60
FG+++FA++ L C ++ ++ + +KG G + +YF+ + VTR+Y+++ F +S T+D
Sbjct: 21 FGLREFALITGLRCHEISDINHEDIKGGGWLKGVYFENLKTVTRQYLNVMFNISTARTDD 80
Query: 61 DMVKIALLYCLESFILPYQDSVHVKMDRIL-------FNSYPW-RAAFDLLINSMKKEIG 120
D +K+A LY LESF++P Q+ ++V D I+ F+ YPW R AF+LL++ M + +
Sbjct: 81 DRIKMAKLYFLESFLIPKQECLNVDWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVC 140
Query: 121 SRGKKGIGIGNFIHALL 129
S+G+ GI +G FI +L
Sbjct: 141 SKGQTGISMGGFIFPIL 157
BLAST of MS012319 vs. ExPASy TrEMBL
Match:
A0A5D3DX05 (DUF1985 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G00010 PE=4 SV=1)
HSP 1 Score: 109.8 bits (273), Expect = 8.8e-21
Identity = 50/135 (37.04%), Postives = 87/135 (64.44%), Query Frame = 0
Query: 1 FGIKDFAVVISLNCGPVTQLDIDAMKGKGIMNMYFDGERFVTRKYIDLAFKVSKNGTNDD 60
FG+++F+++ L C ++ + + KG G + +YF+ + VTR+Y+++ F +S GT+DD
Sbjct: 181 FGLREFSLITGLKCHEISDIP-ERYKGGGRLKVYFENLKIVTRQYLNVMFNISTAGTDDD 240
Query: 61 MVKIALLYCLESFILPYQDSVHVKMDRI-------LFNSYPW-RAAFDLLINSMKKEIGS 120
+K+ LY LESF++P Q+SV ++ D I LF+ YPW R AF+LL+ M + + S
Sbjct: 241 RIKMTKLYFLESFLIPKQESVSIEWDHIIMVDDDKLFDGYPWSRVAFELLVEFMSRVVCS 300
Query: 121 RGKKGIGIGNFIHAL 128
+G+ GI + FI ++
Sbjct: 301 KGQTGISMDGFIFSI 314
BLAST of MS012319 vs. ExPASy TrEMBL
Match:
A0A5A7U047 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G00640 PE=4 SV=1)
HSP 1 Score: 109.0 bits (271), Expect = 1.5e-20
Identity = 51/137 (37.23%), Postives = 87/137 (63.50%), Query Frame = 0
Query: 1 FGIKDFAVVISLNCGPVTQLDIDAMKGKG-IMNMYFDGERFVTRKYIDLAFKVSKNGTND 60
FG+++FA++ L C + ++ + + G G + +YF+ + VTR+Y+++ F +S GT+D
Sbjct: 252 FGLREFALITGLRCHEIPDINHEDINGGGRLKGVYFENLKTVTRQYLNVMFNISTTGTDD 311
Query: 61 DMVKIALLYCLESFILPYQDSVHVKMDRIL-------FNSYPW-RAAFDLLINSMKKEIG 120
D +K+A LY LESF++P Q+ V D I+ F+ YPW R AF+LL++ M + +
Sbjct: 312 DRIKMAKLYFLESFLIPKQECPSVDWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRVVC 371
Query: 121 SRGKKGIGIGNFIHALL 129
S+G+ GI +G FI +L
Sbjct: 372 SKGQTGISMGGFIFPIL 388
BLAST of MS012319 vs. ExPASy TrEMBL
Match:
A0A5D3CEX9 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00200 PE=4 SV=1)
HSP 1 Score: 106.3 bits (264), Expect = 9.7e-20
Identity = 52/138 (37.68%), Postives = 89/138 (64.49%), Query Frame = 0
Query: 1 FGIKDFAVVISLNCGPVTQLDIDAMKGKGIMN-MYFDGERFVTRKYIDLAFKVSKNGTND 60
FG+++FA++ L C + ++ + +KG G + +YF+ + VTR+Y+++ F +S GT+D
Sbjct: 21 FGLREFALITGLRCHEIPNINHEDIKGGGRLKWVYFENLKTVTRQYLNVMFNISTAGTDD 80
Query: 61 DMVKIALLYCLESFILPYQDSVHVKMDRIL-------FNSYPW-RAAFDLLINSMKKEIG 120
D +K+A LY LESF++P Q+ + V D I+ F+ YPW R AF+LL++ M + +
Sbjct: 81 DRIKMAKLYFLESFLIPKQECLSVDWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVC 140
Query: 121 SRGKKGIGI-GNFIHALL 129
S+G+ GI + G FI +L
Sbjct: 141 SKGQTGISMGGGFIFPIL 158
BLAST of MS012319 vs. ExPASy TrEMBL
Match:
A0A5A7U6E1 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001210 PE=4 SV=1)
HSP 1 Score: 105.1 bits (261), Expect = 2.2e-19
Identity = 51/137 (37.23%), Postives = 86/137 (62.77%), Query Frame = 0
Query: 1 FGIKDFAVVISLNCGPVTQLDIDAMKGKG-IMNMYFDGERFVTRKYIDLAFKVSKNGTND 60
FG+++FA++ L C + ++ D +KG G + +YF+ + V R+Y+++ F +S T+D
Sbjct: 21 FGLREFALITGLKCHEIPYINHDDIKGGGRLKGVYFENLKTVMRQYLNVMFNISTARTDD 80
Query: 61 DMVKIALLYCLESFILPYQDSVHVKMDRIL-------FNSYPW-RAAFDLLINSMKKEIG 120
D +K+A LY LESF++P Q+ + V D I+ F+ YPW R AF+LL++ M + +
Sbjct: 81 DRIKMAKLYFLESFLIPKQECLSVDWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRVVC 140
Query: 121 SRGKKGIGIGNFIHALL 129
S+G+ GI I FI +L
Sbjct: 141 SKGQTGISIWGFIFLIL 157
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0040869.1 | 1.4e-20 | 37.23 | protein Ycf2-like [Cucumis melo var. makuwa] | [more] |
KAA0048427.1 | 1.8e-20 | 37.04 | hypothetical protein E6C27_scaffold61G00010 [Cucumis melo var. makuwa] >TYK28223... | [more] |
KAA0047596.1 | 3.1e-20 | 37.23 | protein Ycf2-like [Cucumis melo var. makuwa] | [more] |
TYK09852.1 | 2.0e-19 | 37.68 | protein Ycf2-like [Cucumis melo var. makuwa] | [more] |
TYK23840.1 | 4.5e-19 | 37.23 | protein Ycf2-like [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7THT9 | 6.7e-21 | 37.23 | Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold345G00... | [more] |
A0A5D3DX05 | 8.8e-21 | 37.04 | DUF1985 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5A7U047 | 1.5e-20 | 37.23 | Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G00... | [more] |
A0A5D3CEX9 | 9.7e-20 | 37.68 | Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G002... | [more] |
A0A5A7U6E1 | 2.2e-19 | 37.23 | Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001... | [more] |
Match Name | E-value | Identity | Description | |