MS010897 (gene) Bitter gourd (TR) v1

Overview


Name	MS010897
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold35: 2809971 .. 2810213 (+)
RNA-Seq Expression	MS010897
Synteny	MS010897

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCACTCTTTCCAACCCACCAAACACCTTCCCTCCGACAAACACCACCGGAAACTGCACCCTCCCGTCGTTTCCATCCCCCGCACCGGCGGATTTCGCAATCTCACCGGCGATATCGGCCTCGTCTTCCTCATCGACGGCGAAGAAAGCCGGGTTCGCGCCGTGGCCCAACAGGAGCAGTTTCAAAACATGGCTCATACAACACCCACTCCTTGCCAGGACGACGACGGCGTTTTTGGACACC

mRNA sequence

ATCACTCTTTCCAACCCACCAAACACCTTCCCTCCGACAAACACCACCGGAAACTGCACCCTCCCGTCGTTTCCATCCCCCGCACCGGCGGATTTCGCAATCTCACCGGCGATATCGGCCTCGTCTTCCTCATCGACGGCGAAGAAAGCCGGGTTCGCGCCGTGGCCCAACAGGAGCAGTTTCAAAACATGGCTCATACAACACCCACTCCTTGCCAGGACGACGACGGCGTTTTTGGACACC

Coding sequence (CDS)

ATCACTCTTTCCAACCCACCAAACACCTTCCCTCCGACAAACACCACCGGAAACTGCACCCTCCCGTCGTTTCCATCCCCCGCACCGGCGGATTTCGCAATCTCACCGGCGATATCGGCCTCGTCTTCCTCATCGACGGCGAAGAAAGCCGGGTTCGCGCCGTGGCCCAACAGGAGCAGTTTCAAAACATGGCTCATACAACACCCACTCCTTGCCAGGACGACGACGGCGTTTTTGGACACC

Protein sequence

ITLSNPPNTFPPTNTTGNCTLPSFPSPAPADFAISPAISASSSSSTAKKAGFAPWPNRSSFKTWLIQHPLLARTTTAFLDT

Homology

[Close]

BLAST of MS010897 vs. ExPASy TrEMBL
Match: A0A0A0LQX8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G409500 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.5e-07
Identity = 42/81 (51.85%), Postives = 48/81 (59.26%), Query Frame = 0


Query: 1  ITLSNPPNTFPPTNTTGNCTLPSFPSPAPADFAISPAISASSSSSTAKKAGFAPWPNRSS 60
          +TLS PPN  PP  T GNC L +    A A  ++S     S SSST+  AG AP PNR  
Sbjct: 1  MTLSKPPNKVPPIKTAGNCKL-TLEDLAKASNSLS--TPDSCSSSTSYTAGLAPSPNRRR 60

Query: 61 FKTWLIQHPLLARTTTAFLDT 82
          F TWLIQHPLLA T  A  +T
Sbjct: 61 FTTWLIQHPLLANTIAALSET 78

The following BLAST results are available for this feature:

BLAST of MS010897 vs.


Match Name	E-value	Identity	Description

BLAST of MS010897 vs.


Match Name	E-value	Identity	Description

BLAST of MS010897 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQX8	3.5e-07	51.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G409500 PE=4 SV=1	[more]

BLAST of MS010897 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS010897.1	MS010897.1	mRNA