MS010815 (gene) Bitter gourd (TR) v1

Overview


Name	MS010815
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Wound-responsive family protein
Location	scaffold35: 2190879 .. 2191091 (+)
RNA-Seq Expression	MS010815
Synteny	MS010815

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAGGGCGTTGGGGCAATTCGCGGTACGGTTTGTACAGAGGACGCGAGATCAGGCGGTGAAGAGCGATCCCACGGCCTTGAAGTCTCTCAAGGATTCAACTTCTGCTGCTTCTTCCAAATGCAACTCCGGCGCCGATGAGAGCCACAGGCTTAAGAGAGCTGAAGAGTCTCTAAGGACTGTCATGTATTTGAGTTCTTGGGCTCCTACT

mRNA sequence

ATGAGCAGGGCGTTGGGGCAATTCGCGGTACGGTTTGTACAGAGGACGCGAGATCAGGCGGTGAAGAGCGATCCCACGGCCTTGAAGTCTCTCAAGGATTCAACTTCTGCTGCTTCTTCCAAATGCAACTCCGGCGCCGATGAGAGCCACAGGCTTAAGAGAGCTGAAGAGTCTCTAAGGACTGTCATGTATTTGAGTTCTTGGGCTCCTACT

Coding sequence (CDS)

ATGAGCAGGGCGTTGGGGCAATTCGCGGTACGGTTTGTACAGAGGACGCGAGATCAGGCGGTGAAGAGCGATCCCACGGCCTTGAAGTCTCTCAAGGATTCAACTTCTGCTGCTTCTTCCAAATGCAACTCCGGCGCCGATGAGAGCCACAGGCTTAAGAGAGCTGAAGAGTCTCTAAGGACTGTCATGTATTTGAGTTCTTGGGCTCCTACT

Protein sequence

MSRALGQFAVRFVQRTRDQAVKSDPTALKSLKDSTSAASSKCNSGADESHRLKRAEESLRTVMYLSSWAPT

Homology

[Close]

BLAST of MS010815 vs. NCBI nr
Match: KAG6603727.1 (hypothetical protein SDJN03_04336, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 103.6 bits (257), Expect = 7.2e-19
Identity = 56/75 (74.67%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 1  MSRALGQFAVRFVQRTRDQAVKSDPTALKSLKDSTSAASSKCNSG----ADESHRLKRAE 60
          MS+ LGQFA RFVQRTRDQA+KSDP ALKSLKDSTS++SSKC SG    A E  ++K AE
Sbjct: 1  MSKVLGQFAARFVQRTRDQAMKSDPAALKSLKDSTSSSSSKCYSGNKLVAGEDRKVKTAE 60

Query: 61 ESLRTVMYLSSWAPT 72
          ESLRTVMYLS WAPT
Sbjct: 61 ESLRTVMYLSCWAPT 75

[Close]

BLAST of MS010815 vs. NCBI nr
Match: TYK13098.1 (wound induced protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 4.8e-15
Identity = 53/79 (67.09%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 1  MSRALGQFAVRFVQRTRDQAVKSDPTALKSLKD----STSAASSKCNSG----ADESHRL 60
          MSR  GQFA R +Q+TRDQAVKSDP ALKSLKD    S+S++SSKC SG    A E   +
Sbjct: 1  MSRVFGQFATRCIQKTRDQAVKSDPAALKSLKDSSSSSSSSSSSKCYSGNKLSAGEGQNV 60

Query: 61 KRAEESLRTVMYLSSWAPT 72
          K AEESLRTVMYLS WAPT
Sbjct: 61 KIAEESLRTVMYLSCWAPT 79

[Close]

BLAST of MS010815 vs. NCBI nr
Match: KGN49179.1 (hypothetical protein Csa_003127 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 5.9e-13
Identity = 48/76 (63.16%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 2   SRALGQFAVRFVQRTRDQAVKSDPTALKSLKD--STSAASSKCNSG----ADESHRLKRA 61
           ++  GQF  R +Q+TRDQA KSDP ALKSLKD  S+S++SSKC SG    A E   +K A
Sbjct: 36  AQVFGQFVTRCIQKTRDQAAKSDPAALKSLKDSSSSSSSSSKCYSGNKFSAGEGQNVKIA 95

Query: 62  EESLRTVMYLSSWAPT 72
           EESLRTVMYLS WAPT
Sbjct: 96  EESLRTVMYLSCWAPT 111

[Close]

BLAST of MS010815 vs. NCBI nr
Match: RYQ82362.1 (hypothetical protein Ahy_B10g100948 isoform A [Arachis hypogaea])

HSP 1 Score: 64.7 bits (156), Expect = 3.7e-07
Identity = 42/82 (51.22%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 1   MSRALGQFAVRFVQRTRDQAVKSDPTALKSLKDSTSAASSK---------CNSGA---DE 60
           MSR + Q  VR VQ  +DQ  K D + LKSLKDS  + SSK          NS A    +
Sbjct: 67  MSRVMYQAGVRVVQGMKDQRSKCDYSTLKSLKDSACSPSSKQARRFSSSSFNSSAIKSSD 126

Query: 61  SHRLKRAEESLRTVMYLSSWAP 71
           SH++K+AEESLRTVMYLS W P
Sbjct: 127 SHKIKQAEESLRTVMYLSCWGP 148

[Close]

BLAST of MS010815 vs. NCBI nr
Match: KAF9683494.1 (hypothetical protein SADUNF_Sadunf04G0019400 [Salix dunnii])

HSP 1 Score: 59.3 bits (142), Expect = 1.5e-05
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = 0


Query: 1  MSRALGQFAVRFVQRTRDQAVKSDPTALKSLKDSTSAASSK----CNSGAD-------ES 60
          MSR L Q  +R VQ  +DQA K D +A+KSL+DS  ++SSK     +   D        S
Sbjct: 6  MSRVLYQSGMRVVQGMKDQASKCDSSAIKSLRDSACSSSSKQARRFSGSVDSSVFMDARS 65

Query: 61 HRLKRAEESLRTVMYLSSWAP 71
           + K+AEESLRTVM+LS W P
Sbjct: 66 EKFKKAEESLRTVMFLSCWGP 86

[Close]

BLAST of MS010815 vs. ExPASy TrEMBL
Match: A0A5D3CPJ3 (Wound induced protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007060 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.3e-15
Identity = 53/79 (67.09%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 1  MSRALGQFAVRFVQRTRDQAVKSDPTALKSLKD----STSAASSKCNSG----ADESHRL 60
          MSR  GQFA R +Q+TRDQAVKSDP ALKSLKD    S+S++SSKC SG    A E   +
Sbjct: 1  MSRVFGQFATRCIQKTRDQAVKSDPAALKSLKDSSSSSSSSSSSKCYSGNKLSAGEGQNV 60

Query: 61 KRAEESLRTVMYLSSWAPT 72
          K AEESLRTVMYLS WAPT
Sbjct: 61 KIAEESLRTVMYLSCWAPT 79

[Close]

BLAST of MS010815 vs. ExPASy TrEMBL
Match: A0A0A0KK17 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516870 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.8e-13
Identity = 48/76 (63.16%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 2   SRALGQFAVRFVQRTRDQAVKSDPTALKSLKD--STSAASSKCNSG----ADESHRLKRA 61
           ++  GQF  R +Q+TRDQA KSDP ALKSLKD  S+S++SSKC SG    A E   +K A
Sbjct: 36  AQVFGQFVTRCIQKTRDQAAKSDPAALKSLKDSSSSSSSSSKCYSGNKFSAGEGQNVKIA 95

Query: 62  EESLRTVMYLSSWAPT 72
           EESLRTVMYLS WAPT
Sbjct: 96  EESLRTVMYLSCWAPT 111

[Close]

BLAST of MS010815 vs. ExPASy TrEMBL
Match: A0A444WYC9 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B10g100948 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.8e-07
Identity = 42/82 (51.22%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 1   MSRALGQFAVRFVQRTRDQAVKSDPTALKSLKDSTSAASSK---------CNSGA---DE 60
           MSR + Q  VR VQ  +DQ  K D + LKSLKDS  + SSK          NS A    +
Sbjct: 67  MSRVMYQAGVRVVQGMKDQRSKCDYSTLKSLKDSACSPSSKQARRFSSSSFNSSAIKSSD 126

Query: 61  SHRLKRAEESLRTVMYLSSWAP 71
           SH++K+AEESLRTVMYLS W P
Sbjct: 127 SHKIKQAEESLRTVMYLSCWGP 148

[Close]

BLAST of MS010815 vs. ExPASy TrEMBL
Match: A0A5N5MZZ3 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_005484 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.8e-06
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = 0


Query: 1  MSRALGQFAVRFVQRTRDQAVKSDPTALKSLKDSTSAASSK----CNSGAD-------ES 60
          MSR L Q  +R VQ  +DQA K D +A+KSL+DS  ++SSK     +   D        S
Sbjct: 6  MSRVLYQSGMRVVQGMKDQASKCDSSAIKSLRDSACSSSSKQARRFSGSVDSSVFMDARS 65

Query: 61 HRLKRAEESLRTVMYLSSWAP 71
           + K+AEESLRTVM+LS W P
Sbjct: 66 EKFKQAEESLRTVMFLSCWGP 86

[Close]

BLAST of MS010815 vs. ExPASy TrEMBL
Match: A0A6N2KXE2 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS151145 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.8e-06
Identity = 38/81 (46.91%), Postives = 48/81 (59.26%), Query Frame = 0


Query: 1  MSRALGQFAVRFVQRTRDQAVKSDPTALKSLKDSTSAASSK----CNSGAD-------ES 60
          MSR L Q  +R  Q  +DQA K D TA+KSL+DS  ++SSK     +   D        S
Sbjct: 6  MSRVLYQSGMRVAQGMKDQASKCDSTAIKSLRDSACSSSSKQARRFSGSVDSSVFMEARS 65

Query: 61 HRLKRAEESLRTVMYLSSWAP 71
           + K+AEESLRTVM+LS W P
Sbjct: 66 EKFKQAEESLRTVMFLSCWGP 86

[Close]

BLAST of MS010815 vs. TAIR 10
Match: AT4G10270.1 (Wound-responsive family protein )

HSP 1 Score: 42.7 bits (99), Expect = 1.4e-04
Identity = 24/66 (36.36%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 5  LGQFAVRFVQRTRDQAVKSDPTALKSLKDSTSAASSKCNSGADESHRLKRAEESLRTVMY 64
          LG     ++ R+ +Q ++++  ++   K  +S++ S   + + ES + K+AEESLRTVMY
Sbjct: 24 LGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSAAVTSSGESEKAKKAEESLRTVMY 83

Query: 65 LSSWAP 71
          LS W P
Sbjct: 84 LSCWGP 89

[Close]

BLAST of MS010815 vs. TAIR 10
Match: AT4G05070.1 (Wound-responsive family protein )

HSP 1 Score: 41.2 bits (95), Expect = 4.1e-04
Identity = 30/84 (35.71%), Postives = 44/84 (52.38%), Query Frame = 0


Query: 1  MSRALGQFAVRFVQRTRDQAVKSDPTALKS-LKDSTSAASSKCNS--------------- 60
          M+R + QF+ + ++      V    T L+S +K+S S+  S  +S               
Sbjct: 1  MNRVISQFSGKLMKEKSVTGVSGGDTTLRSAVKESVSSPQSASSSSSVRRLKGDLESSRF 60

Query: 61 GADESHRLKRAEESLRTVMYLSSW 69
          GA  S RL++AEESLRTVM+LS W
Sbjct: 61 GAAASERLRQAEESLRTVMFLSCW 84

The following BLAST results are available for this feature:

BLAST of MS010815 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603727.1	7.2e-19	74.67	hypothetical protein SDJN03_04336, partial [Cucurbita argyrosperma subsp. sorori...	[more]
TYK13098.1	4.8e-15	67.09	wound induced protein-like [Cucumis melo var. makuwa]	[more]
KGN49179.1	5.9e-13	63.16	hypothetical protein Csa_003127 [Cucumis sativus]	[more]
RYQ82362.1	3.7e-07	51.22	hypothetical protein Ahy_B10g100948 isoform A [Arachis hypogaea]	[more]
KAF9683494.1	1.5e-05	46.91	hypothetical protein SADUNF_Sadunf04G0019400 [Salix dunnii]	[more]

BLAST of MS010815 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS010815 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CPJ3	2.3e-15	67.09	Wound induced protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A0A0KK17	2.8e-13	63.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516870 PE=4 SV=1	[more]
A0A444WYC9	1.8e-07	51.22	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B10g100948 PE=4 SV=1	[more]
A0A5N5MZZ3	9.8e-06	46.91	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_005484 PE=4 SV=1	[more]
A0A6N2KXE2	9.8e-06	46.91	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS151145 PE=4 SV=...	[more]

BLAST of MS010815 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10270.1	1.4e-04	36.36	Wound-responsive family protein	[more]
AT4G05070.1	4.1e-04	35.71	Wound-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 10..70 e-value: 2.7E-10 score: 41.1
IPR022251	Protein of unknown function wound-induced	PANTHER	PTHR33090	DUF3774 DOMAIN PROTEIN-RELATED	coord: 1..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..53
None	No IPR available	PANTHER	PTHR33090:SF41	WOUND-RESPONSIVE FAMILY PROTEIN	coord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS010815.1	MS010815.1	mRNA