MS009985.1 (mRNA) Bitter gourd (TR) v1

Overview
NameMS009985.1
TypemRNA
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Locationscaffold223: 210835 .. 211086 (-)
Sequence length252
RNA-Seq ExpressionMS009985.1
SyntenyMS009985.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTGGGTTCCTCCTCCGGCTGGCTTGCTTAAGGTTAATACTGATGCTGCTTTAGATTTCGAGCGATCTGTGCCTGGTTTGGGTGTAGTTATTCGAGATTGTAATGGGCATGTGATGCTTTCGGCTTCTTCACAAGTAGCACATATGGTAGGTGTTGACCTGGCGGAGGCTATGTCAGTGAACTTTGGAATTCGGCTATCTCAGGAGATGGCTTTGTTTCCGTGTGTTCTGGAAATGGATTCATACTGTATC

mRNA sequence

GTTTGGGTTCCTCCTCCGGCTGGCTTGCTTAAGGTTAATACTGATGCTGCTTTAGATTTCGAGCGATCTGTGCCTGGTTTGGGTGTAGTTATTCGAGATTGTAATGGGCATGTGATGCTTTCGGCTTCTTCACAAGTAGCACATATGGTAGGTGTTGACCTGGCGGAGGCTATGTCAGTGAACTTTGGAATTCGGCTATCTCAGGAGATGGCTTTGTTTCCGTGTGTTCTGGAAATGGATTCATACTGTATC

Coding sequence (CDS)

GTTTGGGTTCCTCCTCCGGCTGGCTTGCTTAAGGTTAATACTGATGCTGCTTTAGATTTCGAGCGATCTGTGCCTGGTTTGGGTGTAGTTATTCGAGATTGTAATGGGCATGTGATGCTTTCGGCTTCTTCACAAGTAGCACATATGGTAGGTGTTGACCTGGCGGAGGCTATGTCAGTGAACTTTGGAATTCGGCTATCTCAGGAGATGGCTTTGTTTCCGTGTGTTCTGGAAATGGATTCATACTGTATC

Protein sequence

VWVPPPAGLLKVNTDAALDFERSVPGLGVVIRDCNGHVMLSASSQVAHMVGVDLAEAMSVNFGIRLSQEMALFPCVLEMDSYCI
Homology
BLAST of MS009985.1 vs. NCBI nr
Match: XP_023882817.1 (uncharacterized protein LOC111995143 [Quercus suber])

HSP 1 Score: 77.4 bits (189), Expect = 6.5e-11
Identity = 36/83 (43.37%), Postives = 54/83 (65.06%), Query Frame = 0

Query: 2   WVPPPAGLLKVNTDAALDFERSVPGLGVVIRDCNGHVMLSASSQVAHMVGVDLAEAMSVN 61
           W PPPAG+ K N DAAL  ER+  G+GVVIRDC G ++ + S ++     V+ AEA++ +
Sbjct: 137 WAPPPAGMYKANFDAALFEERNFGGIGVVIRDCMGEIIGALSQKILLPQSVEHAEALAAS 196

Query: 62  FGIRLSQEMALFPCVLEMDSYCI 85
             ++L+ E+ LF  + E DS C+
Sbjct: 197 RAVQLATELCLFDVIFEGDSLCV 219

BLAST of MS009985.1 vs. NCBI nr
Match: TXG69190.1 (hypothetical protein EZV62_004125 [Acer yangbiense])

HSP 1 Score: 73.6 bits (179), Expect = 9.4e-10
Identity = 37/83 (44.58%), Postives = 47/83 (56.63%), Query Frame = 0

Query: 2   WVPPPAGLLKVNTDAALDFERSVPGLGVVIRDCNGHVMLSASSQVAHMVGVDLAEAMSVN 61
           W P P+G  K+NTDA LD    V G+GVVIRDC GHVM S       ++     EA++V 
Sbjct: 702 WKPSPSGSYKINTDATLDCRAKVTGIGVVIRDCYGHVMASLCQSFPGLLQPQTVEAVAVL 761

Query: 62  FGIRLSQEMALFPCVLEMDSYCI 85
            G RL+ E  L P  +E DS  +
Sbjct: 762 RGFRLALEAGLCPASIESDSLSV 784

BLAST of MS009985.1 vs. NCBI nr
Match: XP_024041962.1 (uncharacterized protein LOC112099092 [Citrus clementina])

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-09
Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = 0

Query: 2   WVPPPAGLLKVNTDAALDFERSVPGLGVVIRDCNGHVMLSASSQVAHMVGVDLAEAMSVN 61
           W+PPP G  K N DAA++ E++  GLGVVIRD +G ++++A +   +   V  AEA +VN
Sbjct: 115 WIPPPQGHFKANVDAAVNKEKNQVGLGVVIRDDSGAIIIAAVNHTKYHGDVAQAEAAAVN 174

Query: 62  FGIRLSQEMALFPCVLEMD 81
           FG+++  E  L P +LE D
Sbjct: 175 FGLQVVMEAKLSPLILETD 193

BLAST of MS009985.1 vs. NCBI nr
Match: XP_015389224.1 (uncharacterized protein LOC107178480 [Citrus sinensis])

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-09
Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = 0

Query: 2   WVPPPAGLLKVNTDAALDFERSVPGLGVVIRDCNGHVMLSASSQVAHMVGVDLAEAMSVN 61
           W+PPP G  K N DAA++ E++  GLGVVIRD +G ++++A +   +   V  AEA +VN
Sbjct: 115 WIPPPQGHFKANVDAAVNKEKNQVGLGVVIRDDSGAIIIAAVNHTKYHGDVAQAEAAAVN 174

Query: 62  FGIRLSQEMALFPCVLEMD 81
           FG+++  E  L P +LE D
Sbjct: 175 FGLQVVMEAKLSPLILETD 193

BLAST of MS009985.1 vs. NCBI nr
Match: XP_023904880.1 (uncharacterized protein LOC112016554 [Quercus suber])

HSP 1 Score: 72.0 bits (175), Expect = 2.7e-09
Identity = 35/80 (43.75%), Postives = 51/80 (63.75%), Query Frame = 0

Query: 2   WVPPPAGLLKVNTDAALDFERSVPGLGVVIRDCNGHVMLSASSQVAHMVGVDLAEAMSVN 61
           W PPPAG  K N DAAL  ER+  G+GVVIRDC G ++ + S ++     V+ AEA++ +
Sbjct: 75  WAPPPAGSYKANFDAALFEERNFGGIGVVIRDCMGEIIGALSQKILLPQSVEHAEALAAS 134

Query: 62  FGIRLSQEMALFPCVLEMDS 82
             ++L+ E+ LF  + E DS
Sbjct: 135 RAVQLATELCLFDVIFEGDS 154

BLAST of MS009985.1 vs. ExPASy TrEMBL
Match: A0A1S8ACU2 (Ribonuclease H-like superfamily protein OS=Citrus limon OX=2708 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.5e-10
Identity = 35/79 (44.30%), Postives = 53/79 (67.09%), Query Frame = 0

Query: 2   WVPPPAGLLKVNTDAALDFERSVPGLGVVIRDCNGHVMLSASSQVAHMVGVDLAEAMSVN 61
           W+PPP G  K N DAA++ E++  GLGVVIRD +G ++++A +   +   V  AEA +VN
Sbjct: 444 WIPPPQGHFKANVDAAVNKEKNQVGLGVVIRDDSGAIIIAAVNHTKYHGDVAQAEAAAVN 503

Query: 62  FGIRLSQEMALFPCVLEMD 81
           FG+++  E +L P +LE D
Sbjct: 504 FGLQVVMEASLSPLILETD 522

BLAST of MS009985.1 vs. ExPASy TrEMBL
Match: A0A5C7IIT4 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_004125 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.5e-10
Identity = 37/83 (44.58%), Postives = 47/83 (56.63%), Query Frame = 0

Query: 2   WVPPPAGLLKVNTDAALDFERSVPGLGVVIRDCNGHVMLSASSQVAHMVGVDLAEAMSVN 61
           W P P+G  K+NTDA LD    V G+GVVIRDC GHVM S       ++     EA++V 
Sbjct: 702 WKPSPSGSYKINTDATLDCRAKVTGIGVVIRDCYGHVMASLCQSFPGLLQPQTVEAVAVL 761

Query: 62  FGIRLSQEMALFPCVLEMDSYCI 85
            G RL+ E  L P  +E DS  +
Sbjct: 762 RGFRLALEAGLCPASIESDSLSV 784

BLAST of MS009985.1 vs. ExPASy TrEMBL
Match: B9SH25 (RNase H domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_0581330 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.8e-09
Identity = 33/80 (41.25%), Postives = 53/80 (66.25%), Query Frame = 0

Query: 2   WVPPPAGLLKVNTDAALDFERSVPGLGVVIRDCNGHVMLSASSQVAHMVGVDLAEAMSVN 61
           W PP  GLLK++TDAA+ F++++ GLG+V+RD  G V L  S  +   + V++ EAM++ 
Sbjct: 58  WKPPDYGLLKLDTDAAVHFDKNISGLGMVLRDHKGCVKLVGSYPMKQGLPVEVVEAMAIK 117

Query: 62  FGIRLSQEMALFPCVLEMDS 82
            G+ ++    L+P V+E DS
Sbjct: 118 CGLSVASSHGLWPSVVESDS 137

BLAST of MS009985.1 vs. ExPASy TrEMBL
Match: A0A1S8ABJ9 (Ribonuclease H-like superfamily protein (Fragment) OS=Citrus limon OX=2708 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.8e-09
Identity = 35/81 (43.21%), Postives = 54/81 (66.67%), Query Frame = 0

Query: 1   VWVPPPAGLLKVNTDAALDFERSVPGLGVVIRDCNGHVMLSASSQVAHMVGVDLAEAMSV 60
           +W PP     K+NTDAALD E  V GLG +IR+  G VM + +S+  +   V++AEA+++
Sbjct: 147 IWHPPDPPRYKLNTDAALDKEGGVTGLGCIIRNHQGAVMAAVTSKKPYFGDVEIAEALAI 206

Query: 61  NFGIRLSQEMALFPCVLEMDS 82
             G++L+ E+AL P ++E DS
Sbjct: 207 LEGLKLAAEVALSPHLIESDS 227

BLAST of MS009985.1 vs. ExPASy TrEMBL
Match: A0A5C7GQX3 (RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_026488 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.8e-09
Identity = 35/83 (42.17%), Postives = 52/83 (62.65%), Query Frame = 0

Query: 2   WVPPPAGLLKVNTDAALDFERSVPGLGVVIRDCNGHVMLSASSQVAHMVGVDLAEAMSVN 61
           W+ PP G+ K+NTDAAL+ + +  G+GVVIR+  G VMLS+           +AEA++V 
Sbjct: 81  WLAPPQGMFKINTDAALNVQGNSAGIGVVIRNFRGQVMLSSCKNFRTAFSPVIAEALAVL 140

Query: 62  FGIRLSQEMALFPCVLEMDSYCI 85
            G+RL++    FP VLE D+  +
Sbjct: 141 EGLRLAKLGGFFPTVLESDALTV 163

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023882817.16.5e-1143.37uncharacterized protein LOC111995143 [Quercus suber][more]
TXG69190.19.4e-1044.58hypothetical protein EZV62_004125 [Acer yangbiense][more]
XP_024041962.11.6e-0944.30uncharacterized protein LOC112099092 [Citrus clementina][more]
XP_015389224.11.6e-0944.30uncharacterized protein LOC107178480 [Citrus sinensis][more]
XP_023904880.12.7e-0943.75uncharacterized protein LOC112016554 [Quercus suber][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S8ACU24.5e-1044.30Ribonuclease H-like superfamily protein OS=Citrus limon OX=2708 PE=4 SV=1[more]
A0A5C7IIT44.5e-1044.58Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_004125 PE=4 SV=1[more]
B9SH253.8e-0941.25RNase H domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_0581330 PE... [more]
A0A1S8ABJ93.8e-0943.21Ribonuclease H-like superfamily protein (Fragment) OS=Citrus limon OX=2708 PE=4 ... [more]
A0A5C7GQX33.8e-0942.17RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_026488 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 13..82
e-value: 2.8E-9
score: 36.8
NoneNo IPR availablePANTHERPTHR47074BNAC02G40300D PROTEINcoord: 2..81
NoneNo IPR availablePANTHERPTHR47074:SF25SUBFAMILY NOT NAMEDcoord: 2..81

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MS009985MS009985gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MS009985.1-cdsMS009985.1-cds-scaffold223:210835..211086CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MS009985.1MS009985.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity