MS008025 (gene) Bitter gourd (TR) v1

Overview


Name	MS008025
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Formamidopyrimidine-DNA glycosylase-like
Location	scaffold284: 221765 .. 221947 (+)
RNA-Seq Expression	MS008025
Synteny	MS008025

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGCAACAAAAGGCGATCTTGTGCTATACTCCGGTGATCTCTTTCCTACCGCGGCACGCAAACTCCCATCGTGTCCTAAATCACATTCCGTGAATCGAAAGGGGAAGCCTACTCATCCATCAGCTCCTCTCGTAGATCGGTGCGGTTTTACGAAGCGTCTAAGCACAGTTCACTCGCGT

mRNA sequence

ATGACAGCAACAAAAGGCGATCTTGTGCTATACTCCGGTGATCTCTTTCCTACCGCGGCACGCAAACTCCCATCGTGTCCTAAATCACATTCCGTGAATCGAAAGGGGAAGCCTACTCATCCATCAGCTCCTCTCGTAGATCGGTGCGGTTTTACGAAGCGTCTAAGCACAGTTCACTCGCGT

Coding sequence (CDS)

ATGACAGCAACAAAAGGCGATCTTGTGCTATACTCCGGTGATCTCTTTCCTACCGCGGCACGCAAACTCCCATCGTGTCCTAAATCACATTCCGTGAATCGAAAGGGGAAGCCTACTCATCCATCAGCTCCTCTCGTAGATCGGTGCGGTTTTACGAAGCGTCTAAGCACAGTTCACTCGCGT

Protein sequence

MTATKGDLVLYSGDLFPTAARKLPSCPKSHSVNRKGKPTHPSAPLVDRCGFTKRLSTVHSR

Homology

[Close]

BLAST of MS008025 vs. NCBI nr
Match: PPR89037.1 (hypothetical protein GOBAR_AA31657 [Gossypium barbadense] >TYH76667.1 hypothetical protein ES332_D04G101500v1 [Gossypium tomentosum])

HSP 1 Score: 122.9 bits (307), Expect = 9.8e-25
Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 1  MTATKGDLVLYSGDLFPTAARKLPSCPKSHSVNRKGKPTHPSAPLVDRCGFTKRLSTVHS 60
          M A KGDLVLYSGDLFPT ARKLPSCP+SHSVNRKGKPTHPSAPLVDRCGFTKRLSTVHS
Sbjct: 21 MAARKGDLVLYSGDLFPTEARKLPSCPRSHSVNRKGKPTHPSAPLVDRCGFTKRLSTVHS 80

Query: 61 R 62
          R
Sbjct: 81 R 81

[Close]

BLAST of MS008025 vs. NCBI nr
Match: KAF3973006.1 (hypothetical protein CMV_003550 [Castanea mollissima])

HSP 1 Score: 120.6 bits (301), Expect = 4.9e-24
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1   MTATKGDLVLYSGDLFPTAARKLPSCPKSHSVNRKGKPTHPSAPLVDRCGFTKRLSTVHS 60
           M A KGDLVLY GDLFPT ARKLPSCP+SHSVNRKGKPTHPSAPLVDRCGFTKRLSTVHS
Sbjct: 93  MAARKGDLVLYFGDLFPTEARKLPSCPRSHSVNRKGKPTHPSAPLVDRCGFTKRLSTVHS 152

Query: 61  R 62
           R
Sbjct: 153 R 153

[Close]

BLAST of MS008025 vs. NCBI nr
Match: KAB8477477.1 (hypothetical protein FH972_025343 [Carpinus fangiana])

HSP 1 Score: 120.6 bits (301), Expect = 4.9e-24
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  MTATKGDLVLYSGDLFPTAARKLPSCPKSHSVNRKGKPTHPSAPLVDRCGFTKRLSTVHS 60
          M A KGDLVLY GDLFPT ARKLPSCP+SHSVNRKGKPTHPSAPLVDRCGFTKRLSTVHS
Sbjct: 35 MAARKGDLVLYFGDLFPTEARKLPSCPRSHSVNRKGKPTHPSAPLVDRCGFTKRLSTVHS 94

Query: 61 R 62
          R
Sbjct: 95 R 95

[Close]

BLAST of MS008025 vs. NCBI nr
Match: KAG6621683.1 (hypothetical protein I3842_Q010000 [Carya illinoinensis])

HSP 1 Score: 120.6 bits (301), Expect = 4.9e-24
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1   MTATKGDLVLYSGDLFPTAARKLPSCPKSHSVNRKGKPTHPSAPLVDRCGFTKRLSTVHS 60
           M A KGDLVLY GDLFPT ARKLPSCP+SHSVNRKGKPTHPSAPLVDRCGFTKRLSTVHS
Sbjct: 64  MAARKGDLVLYFGDLFPTEARKLPSCPRSHSVNRKGKPTHPSAPLVDRCGFTKRLSTVHS 123

Query: 61  R 62
           R
Sbjct: 124 R 124

[Close]

BLAST of MS008025 vs. NCBI nr
Match: KAB1226671.1 (hypothetical protein CJ030_MR1G008480 [Morella rubra])

HSP 1 Score: 118.6 bits (296), Expect = 1.8e-23
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   MTATKGDLVLYSGDLFPTAARKLPSCPKSHSVNRKGKPTHPSAPLVDRCGFTKRLSTVHS 60
           M A KGDLVLY GDLFPT ARKLPSCP+SHSVNRKGKP HPSAPLVDRCGFTKRLSTVHS
Sbjct: 64  MAARKGDLVLYFGDLFPTEARKLPSCPRSHSVNRKGKPAHPSAPLVDRCGFTKRLSTVHS 123

Query: 61  R 62
           R
Sbjct: 124 R 124

[Close]

BLAST of MS008025 vs. ExPASy TrEMBL
Match: A0A5D2LBI2 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D04G101500v1 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.7e-25
Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 1  MTATKGDLVLYSGDLFPTAARKLPSCPKSHSVNRKGKPTHPSAPLVDRCGFTKRLSTVHS 60
          M A KGDLVLYSGDLFPT ARKLPSCP+SHSVNRKGKPTHPSAPLVDRCGFTKRLSTVHS
Sbjct: 21 MAARKGDLVLYSGDLFPTEARKLPSCPRSHSVNRKGKPTHPSAPLVDRCGFTKRLSTVHS 80

Query: 61 R 62
          R
Sbjct: 81 R 81

[Close]

BLAST of MS008025 vs. ExPASy TrEMBL
Match: A0A2P5WDA1 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA31657 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.7e-25
Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 1  MTATKGDLVLYSGDLFPTAARKLPSCPKSHSVNRKGKPTHPSAPLVDRCGFTKRLSTVHS 60
          M A KGDLVLYSGDLFPT ARKLPSCP+SHSVNRKGKPTHPSAPLVDRCGFTKRLSTVHS
Sbjct: 21 MAARKGDLVLYSGDLFPTEARKLPSCPRSHSVNRKGKPTHPSAPLVDRCGFTKRLSTVHS 80

Query: 61 R 62
          R
Sbjct: 81 R 81

[Close]

BLAST of MS008025 vs. ExPASy TrEMBL
Match: A0A5N6L0R1 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_025343 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.4e-24
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  MTATKGDLVLYSGDLFPTAARKLPSCPKSHSVNRKGKPTHPSAPLVDRCGFTKRLSTVHS 60
          M A KGDLVLY GDLFPT ARKLPSCP+SHSVNRKGKPTHPSAPLVDRCGFTKRLSTVHS
Sbjct: 35 MAARKGDLVLYFGDLFPTEARKLPSCPRSHSVNRKGKPTHPSAPLVDRCGFTKRLSTVHS 94

Query: 61 R 62
          R
Sbjct: 95 R 95

[Close]

BLAST of MS008025 vs. ExPASy TrEMBL
Match: A0A7N2MTH6 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.4e-24
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1   MTATKGDLVLYSGDLFPTAARKLPSCPKSHSVNRKGKPTHPSAPLVDRCGFTKRLSTVHS 60
           M A KGDLVLY GDLFPT ARKLPSCP+SHSVNRKGKPTHPSAPLVDRCGFTKRLSTVHS
Sbjct: 93  MAARKGDLVLYFGDLFPTEARKLPSCPRSHSVNRKGKPTHPSAPLVDRCGFTKRLSTVHS 152

Query: 61  R 62
           R
Sbjct: 153 R 153

[Close]

BLAST of MS008025 vs. ExPASy TrEMBL
Match: A0A6A1WN45 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR1G008480 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.9e-24
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   MTATKGDLVLYSGDLFPTAARKLPSCPKSHSVNRKGKPTHPSAPLVDRCGFTKRLSTVHS 60
           M A KGDLVLY GDLFPT ARKLPSCP+SHSVNRKGKP HPSAPLVDRCGFTKRLSTVHS
Sbjct: 64  MAARKGDLVLYFGDLFPTEARKLPSCPRSHSVNRKGKPAHPSAPLVDRCGFTKRLSTVHS 123

Query: 61  R 62
           R
Sbjct: 124 R 124

The following BLAST results are available for this feature:

BLAST of MS008025 vs. NCBI nr


Match Name	E-value	Identity	Description
PPR89037.1	9.8e-25	93.44	hypothetical protein GOBAR_AA31657 [Gossypium barbadense] >TYH76667.1 hypothetic...	[more]
KAF3973006.1	4.9e-24	91.80	hypothetical protein CMV_003550 [Castanea mollissima]	[more]
KAB8477477.1	4.9e-24	91.80	hypothetical protein FH972_025343 [Carpinus fangiana]	[more]
KAG6621683.1	4.9e-24	91.80	hypothetical protein I3842_Q010000 [Carya illinoinensis]	[more]
KAB1226671.1	1.8e-23	90.16	hypothetical protein CJ030_MR1G008480 [Morella rubra]	[more]

BLAST of MS008025 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS008025 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D2LBI2	4.7e-25	93.44	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D04G101500v1 P...	[more]
A0A2P5WDA1	4.7e-25	93.44	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA31657 PE=4 SV...	[more]
A0A5N6L0R1	2.4e-24	91.80	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_025343 PE=4 SV=1	[more]
A0A7N2MTH6	2.4e-24	91.80	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A6A1WN45	8.9e-24	90.16	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR1G008480 PE=4 SV=1	[more]

BLAST of MS008025 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS008025.1	MS008025.1	mRNA