MS008016.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS008016.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ethylene-responsive transcription factor-like protein
Location	scaffold284: 45443 .. 48017 (+)
Sequence length	684
RNA-Seq Expression	MS008016.1
Synteny	MS008016.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGCTTAAGAAGGCGCAGGCTCTTGGGACTGTGCTCTGGTATGTTTAGATATTCTGTGAGATAAATGACCGTTTTTTTTTTTTTTAAATGAAGTAATCATCATTGTCTTTGTTTCCTATCTCACTAGGTGCTCTTGAATTCATTTGATTAAATCTGTTTGTAGAACTTTTTTGGGACTTTTCAGGGAAAAGTTCATTTGTAGCTCCACTTCCTAAGTTTTCAGATAACGGAACCGCTCCCGAAAATCCTAGCCCGAGTAACAAACTAGTCACAGTGCATCCCATGTCTTCTGATGATGTTAACCTCACAGATAGGGTAAGATGACATTCTTTAAAATTTCTCTCACAATTTTCCATATGCATGTGACTGTGTTAACGTTTCTATGAAGCTATTCCCATAATCAAGTTGATTTGTTTAGATTTCTACTTAATTCCCCCAATTTCGTTACCGATTATTGATATTTGAAGTGATAATTAAACCTAGATAACTTTATTGGTTAAGCTTCCTTGTTTTTGTTGATAAGAGTCAGTTGAATATTGTATGCATTCCAAAACATCTCTGGTTGGAGAGGTTTGTTTTAAAGCTTCATCTTAGATAATACTTTTGACCTGCTAAATCTGCAGAAAGTCAGAGTATCGATCGAGATCTGTAAACACGCTCTCTCGCTTCTATAAGTTAAGATGAACAAAATGTTTGCAATACAACTAGGAATGTAAGCCTTTGCTGGATTGAAAGGAAAAAACTTGTTGTTTTATATTTTGTCTTCCTTTTATCTGAAAAGGCCTGTGAAGCTATCTTGGGTTGTCGATTGAGATCTTTAAAGACTCTTGTTTCTATAAGTTAATACACATTTCAAGGAAAAACATATTGGTTAAAGGTAATAAGAAAAAACCGATTTTTATTGAATTACATTTATGCAACCGACTTGAAATTTCGAGTTCATCATTGGAGGGTTGTGTGTCATAGATATAATTCTACCATGATTTGGTTGATGACCATTCATGCAATTGATTTGGTTTCTTTCATTACCGTTGAAAAGTCCAGGTCTAGATCTACCAAGTCGAGTAAAACTCCGATACTTACTGTGCAATTTGAATTACCAGGTTCATTATATTTTCTTTCTGAGCTTGCTTGTTGAATTATAAATCTGACAGTTACGTTCCAAACTCTATCTTTTGTTACAGAGCTCTGTTGTGAATATGGAACCCAATTTTGCAAGTGCATCGGATTTGACCTCGCAGAAAGAACAATCTAATCAGCCAGCGTCAGGTTATCTGCGAACCGTGATCAATAGTTTAATCCTTGTTTATGGGATCATGCTTTTGAGATCTATAGTTTTCATATATGTATAAATCAGGATGCTTTATTTTTGCTTAAATTTCAGCTGTGGCCACTCTTTCATTCGTGTGGTAATGAAATCTTATACGTGGTTTGGATTTTTGAGCTTGTCCATCTCCCTTGTAATTTAAAAGTTATGAGTTCTTTTCATAGTTCCTTAAACCCGATTCTGCGGTTGGCACATCTATCACTTCATTTATAATTTGCGGTCGGTACAGCGAATGGCATTGTGACGACCACACATAAGACACTTGTTTTGTGCATTAACATATTAGTACTGTCGCAAGGATCGTAATTGTCAGTCGTCCTTCTATCACATTGTCCAAAATGTTTGAGATTCAGCTTTCTGCATTTTGTCGCTCCTAATACATGGACTTGTTTTTGCAGGGCATCCACTAAAACATAGAAAGAGACATAGGAGAAAGAACTCTCACAATCAAGAACTGACGATTATGAGAGGTGTCTATTTCAAGAACATGAAATGGCAGGCTGCGATTAAGGTAGACAAGAAACAGATACATTTGGGGACGTTTGGTTCACAAGAAGAGGCTGCTCATTTGTACGATAGGTATTCGCTTCCATATCAACTCTTATCTTGACTTTTAACATTTCCTATATTCTGTTGTAACAAACAGCATTTGCAAACTCCGACCAAGATATTATACATAAATACATACATACATATATATATAGTATACGAACTACCCGAGATATGATAGGCATTATGTTGTATATGCTTCTCACTGTGTAGTTGAGCGTTGGACTTAAATTATTTAGTTCATTTACCTGTCTAAGTTGTTAAGTGAACAAGGGAAAGAACTCGAAGCATTTCGATAAGCATCTCATCAATTCTGGATCGGTGTAGGTACTATAAGCTCACTAGTCTTTTCGGTTATGCAGAGCTGCTTTTGTGTGCGGACGGGAACCAAACTTCGAACTGCCAGAGGACGAGAAGCAAGAACTCCAGAAGTTCAAATGGGAAGACTTCCTAGCAATGACCCGCCATGCTATTACGAACAAAAGTAGTAGTTGCCTTAGCTCCTCTCAAAATCCTTTCTCGTTTTCTCCATACGTCAGATTTGATTCGCTAATCGTTTTAACATTTTTCAGAGCACAAGAGACTTGGCACAGGATCTCCGAAGCAGGCCGGAGCTTCATCACTACCAATCGACACCACCGACTACAAGCACAGGTTCAACGGGTTTCCCTCGCCCGAAGACACTAACTCATCC

mRNA sequence

ATGGTGAGCTTAAGAAGGCGCAGGCTCTTGGGACTGTGCTCTGGGAAAAGTTCATTTGTAGCTCCACTTCCTAAGTTTTCAGATAACGGAACCGCTCCCGAAAATCCTAGCCCGAGTAACAAACTAGTCACAGTGCATCCCATGTCTTCTGATGATGTTAACCTCACAGATAGGAGCTCTGTTGTGAATATGGAACCCAATTTTGCAAGTGCATCGGATTTGACCTCGCAGAAAGAACAATCTAATCAGCCAGCGTCAGGGCATCCACTAAAACATAGAAAGAGACATAGGAGAAAGAACTCTCACAATCAAGAACTGACGATTATGAGAGGTGTCTATTTCAAGAACATGAAATGGCAGGCTGCGATTAAGGTAGACAAGAAACAGATACATTTGGGGACGTTTGGTTCACAAGAAGAGGCTGCTCATTTGTACGATAGAGCTGCTTTTGTGTGCGGACGGGAACCAAACTTCGAACTGCCAGAGGACGAGAAGCAAGAACTCCAGAAGTTCAAATGGGAAGACTTCCTAGCAATGACCCGCCATGCTATTACGAACAAAAAGCACAAGAGACTTGGCACAGGATCTCCGAAGCAGGCCGGAGCTTCATCACTACCAATCGACACCACCGACTACAAGCACAGGTTCAACGGGTTTCCCTCGCCCGAAGACACTAACTCATCC

Coding sequence (CDS)

ATGGTGAGCTTAAGAAGGCGCAGGCTCTTGGGACTGTGCTCTGGGAAAAGTTCATTTGTAGCTCCACTTCCTAAGTTTTCAGATAACGGAACCGCTCCCGAAAATCCTAGCCCGAGTAACAAACTAGTCACAGTGCATCCCATGTCTTCTGATGATGTTAACCTCACAGATAGGAGCTCTGTTGTGAATATGGAACCCAATTTTGCAAGTGCATCGGATTTGACCTCGCAGAAAGAACAATCTAATCAGCCAGCGTCAGGGCATCCACTAAAACATAGAAAGAGACATAGGAGAAAGAACTCTCACAATCAAGAACTGACGATTATGAGAGGTGTCTATTTCAAGAACATGAAATGGCAGGCTGCGATTAAGGTAGACAAGAAACAGATACATTTGGGGACGTTTGGTTCACAAGAAGAGGCTGCTCATTTGTACGATAGAGCTGCTTTTGTGTGCGGACGGGAACCAAACTTCGAACTGCCAGAGGACGAGAAGCAAGAACTCCAGAAGTTCAAATGGGAAGACTTCCTAGCAATGACCCGCCATGCTATTACGAACAAAAAGCACAAGAGACTTGGCACAGGATCTCCGAAGCAGGCCGGAGCTTCATCACTACCAATCGACACCACCGACTACAAGCACAGGTTCAACGGGTTTCCCTCGCCCGAAGACACTAACTCATCC

Protein sequence

MVSLRRRRLLGLCSGKSSFVAPLPKFSDNGTAPENPSPSNKLVTVHPMSSDDVNLTDRSSVVNMEPNFASASDLTSQKEQSNQPASGHPLKHRKRHRRKNSHNQELTIMRGVYFKNMKWQAAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELPEDEKQELQKFKWEDFLAMTRHAITNKKHKRLGTGSPKQAGASSLPIDTTDYKHRFNGFPSPEDTNSS

Homology

[Close]

BLAST of MS008016.1 vs. NCBI nr
Match: XP_022159022.1 (ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Momordica charantia])

HSP 1 Score: 453.8 bits (1166), Expect = 9.1e-124
Identity = 226/228 (99.12%), Postives = 227/228 (99.56%), Query Frame = 0


Query: 1   MVSLRRRRLLGLCSGKSSFVAPLPKFSDNGTAPENPSPSNKLVTVHPMSSDDVNLTDRSS 60
           MVSLRRRRLLGLCSGKSSFVAPLPKFSDNGTAPENPSPSNKLVTVHPMSSDDVNLTDRSS
Sbjct: 1   MVSLRRRRLLGLCSGKSSFVAPLPKFSDNGTAPENPSPSNKLVTVHPMSSDDVNLTDRSS 60

Query: 61  VVNMEPNFASASDLTSQKEQSNQPASGHPLKHRKRHRRKNSHNQELTIMRGVYFKNMKWQ 120
           VVNMEPNFASASDLTSQKEQSNQPASGHPLKHRKRHRRKNSHNQELTIMRGVYFKNMKWQ
Sbjct: 61  VVNMEPNFASASDLTSQKEQSNQPASGHPLKHRKRHRRKNSHNQELTIMRGVYFKNMKWQ 120

Query: 121 AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELPEDEKQELQKFKWEDFLAMT 180
           AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELPEDEKQELQKFKWEDFLAMT
Sbjct: 121 AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELPEDEKQELQKFKWEDFLAMT 180

Query: 181 RHAITNKKHKRLGTGSPKQAGASSLPIDTTDYKHRFNGFPSPEDTNSS 229
           RHAITNKKHKRLGTGSPK+ GASSLPIDTTDYKHRFNGFPSPEDTNSS
Sbjct: 181 RHAITNKKHKRLGTGSPKKPGASSLPIDTTDYKHRFNGFPSPEDTNSS 228

[Close]

BLAST of MS008016.1 vs. NCBI nr
Match: XP_022159021.1 (ethylene-responsive transcription factor-like protein At4g13040 isoform X1 [Momordica charantia])

HSP 1 Score: 446.8 bits (1148), Expect = 1.1e-121
Identity = 226/235 (96.17%), Postives = 227/235 (96.60%), Query Frame = 0


Query: 1   MVSLRRRRLLGLC-------SGKSSFVAPLPKFSDNGTAPENPSPSNKLVTVHPMSSDDV 60
           MVSLRRRRLLGLC       SGKSSFVAPLPKFSDNGTAPENPSPSNKLVTVHPMSSDDV
Sbjct: 1   MVSLRRRRLLGLCSELFWDFSGKSSFVAPLPKFSDNGTAPENPSPSNKLVTVHPMSSDDV 60

Query: 61  NLTDRSSVVNMEPNFASASDLTSQKEQSNQPASGHPLKHRKRHRRKNSHNQELTIMRGVY 120
           NLTDRSSVVNMEPNFASASDLTSQKEQSNQPASGHPLKHRKRHRRKNSHNQELTIMRGVY
Sbjct: 61  NLTDRSSVVNMEPNFASASDLTSQKEQSNQPASGHPLKHRKRHRRKNSHNQELTIMRGVY 120

Query: 121 FKNMKWQAAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELPEDEKQELQKFKW 180
           FKNMKWQAAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELPEDEKQELQKFKW
Sbjct: 121 FKNMKWQAAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELPEDEKQELQKFKW 180

Query: 181 EDFLAMTRHAITNKKHKRLGTGSPKQAGASSLPIDTTDYKHRFNGFPSPEDTNSS 229
           EDFLAMTRHAITNKKHKRLGTGSPK+ GASSLPIDTTDYKHRFNGFPSPEDTNSS
Sbjct: 181 EDFLAMTRHAITNKKHKRLGTGSPKKPGASSLPIDTTDYKHRFNGFPSPEDTNSS 235

[Close]

BLAST of MS008016.1 vs. NCBI nr
Match: XP_038899853.1 (ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Benincasa hispida] >XP_038899854.1 ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Benincasa hispida] >XP_038899855.1 ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Benincasa hispida])

HSP 1 Score: 387.5 bits (994), Expect = 8.0e-104
Identity = 195/227 (85.90%), Postives = 207/227 (91.19%), Query Frame = 0


Query: 1   MVSLRRRRLLGLCSGKSSFVAPLPKFSDNGTAPENPSPSNKLVTVHPMSSDDVNLTDRSS 60
           MVSLRRRRLLGLCSGKSSFV PLPKFS+NGT PENPSPSNKLVT+HP SSDDVN+TDRSS
Sbjct: 1   MVSLRRRRLLGLCSGKSSFVTPLPKFSENGTTPENPSPSNKLVTLHPKSSDDVNITDRSS 60

Query: 61  VVNMEPNFASASDLTSQKEQSNQPASGHPLKHRKRHRRKNSHNQELTIMRGVYFKNMKWQ 120
           + NME +FA+A D TS  EQSNQP SGHPLKHRKRHRRKNSHNQEL+IMRGVYFKNMKWQ
Sbjct: 61  IENMESSFANALDWTSLNEQSNQPISGHPLKHRKRHRRKNSHNQELSIMRGVYFKNMKWQ 120

Query: 121 AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELPEDEKQELQKFKWEDFLAMT 180
           AAIKVDKKQIHLGTFGSQEEAA LYDRAA+VCGREPNFEL E+EKQELQKFKWEDFLAMT
Sbjct: 121 AAIKVDKKQIHLGTFGSQEEAARLYDRAAYVCGREPNFELSEEEKQELQKFKWEDFLAMT 180

Query: 181 RHAITNKKHKRLGTG-SPKQAGASSLPIDTTDYKHRFNGFPSPEDTN 227
           RHAITNKKHKRLGTG SPK+ GASSL ID T++KHRFN  P PED N
Sbjct: 181 RHAITNKKHKRLGTGSSPKKLGASSLQIDNTEFKHRFNEPPVPEDIN 227

[Close]

BLAST of MS008016.1 vs. NCBI nr
Match: XP_038899850.1 (ethylene-responsive transcription factor-like protein At4g13040 isoform X1 [Benincasa hispida] >XP_038899851.1 ethylene-responsive transcription factor-like protein At4g13040 isoform X1 [Benincasa hispida] >XP_038899852.1 ethylene-responsive transcription factor-like protein At4g13040 isoform X1 [Benincasa hispida])

HSP 1 Score: 382.1 bits (980), Expect = 3.3e-102
Identity = 195/230 (84.78%), Postives = 207/230 (90.00%), Query Frame = 0


Query: 1   MVSLRRRRLLGLC---SGKSSFVAPLPKFSDNGTAPENPSPSNKLVTVHPMSSDDVNLTD 60
           MVSLRRRRLLGLC   SGKSSFV PLPKFS+NGT PENPSPSNKLVT+HP SSDDVN+TD
Sbjct: 1   MVSLRRRRLLGLCSDISGKSSFVTPLPKFSENGTTPENPSPSNKLVTLHPKSSDDVNITD 60

Query: 61  RSSVVNMEPNFASASDLTSQKEQSNQPASGHPLKHRKRHRRKNSHNQELTIMRGVYFKNM 120
           RSS+ NME +FA+A D TS  EQSNQP SGHPLKHRKRHRRKNSHNQEL+IMRGVYFKNM
Sbjct: 61  RSSIENMESSFANALDWTSLNEQSNQPISGHPLKHRKRHRRKNSHNQELSIMRGVYFKNM 120

Query: 121 KWQAAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELPEDEKQELQKFKWEDFL 180
           KWQAAIKVDKKQIHLGTFGSQEEAA LYDRAA+VCGREPNFEL E+EKQELQKFKWEDFL
Sbjct: 121 KWQAAIKVDKKQIHLGTFGSQEEAARLYDRAAYVCGREPNFELSEEEKQELQKFKWEDFL 180

Query: 181 AMTRHAITNKKHKRLGTG-SPKQAGASSLPIDTTDYKHRFNGFPSPEDTN 227
           AMTRHAITNKKHKRLGTG SPK+ GASSL ID T++KHRFN  P PED N
Sbjct: 181 AMTRHAITNKKHKRLGTGSSPKKLGASSLQIDNTEFKHRFNEPPVPEDIN 230

[Close]

BLAST of MS008016.1 vs. NCBI nr
Match: XP_023004160.1 (ethylene-responsive transcription factor-like protein At4g13040 [Cucurbita maxima] >XP_023004161.1 ethylene-responsive transcription factor-like protein At4g13040 [Cucurbita maxima] >XP_023004162.1 ethylene-responsive transcription factor-like protein At4g13040 [Cucurbita maxima])

HSP 1 Score: 377.5 bits (968), Expect = 8.2e-101
Identity = 192/228 (84.21%), Postives = 205/228 (89.91%), Query Frame = 0


Query: 1   MVSLRRRRLLGLCSGKSSFVAPLPKFSDNGTAPENPSPSNKLVTVHPMSSDDVNLTDRSS 60
           MVSLRRRRLLGLC+GKSS V  LPKFS+NG APENPSPS+K VTVHP SSDDV++TDRSS
Sbjct: 1   MVSLRRRRLLGLCAGKSSSVTSLPKFSENGIAPENPSPSSKFVTVHPTSSDDVHITDRSS 60

Query: 61  VVNMEPNFASASDLTSQKEQSNQPASGHPLKHRKRHRRKNSHNQELTIMRGVYFKNMKWQ 120
           VVNME +FA+A DLTS KEQSNQP SGHPLKHRKRHRRKNSHNQEL+IMRGVYFKNMKWQ
Sbjct: 61  VVNMESSFANALDLTSLKEQSNQPISGHPLKHRKRHRRKNSHNQELSIMRGVYFKNMKWQ 120

Query: 121 AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELPEDEKQELQKFKWEDFLAMT 180
           AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFEL E+EKQELQKFKWEDFLAMT
Sbjct: 121 AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELSEEEKQELQKFKWEDFLAMT 180

Query: 181 RHAITNKKHKRLGTGSPKQAGASSLPIDTTDYKHRFNGFPSPEDTNSS 229
           RHAITNKKHKRL  GSP + GASS  +D T++KHRF GFP  ED N S
Sbjct: 181 RHAITNKKHKRLIAGSPTKPGASS--VDNTEFKHRFIGFPVREDVNRS 226

[Close]

BLAST of MS008016.1 vs. ExPASy Swiss-Prot
Match: Q56XP9 (Ethylene-responsive transcription factor-like protein At4g13040 OS=Arabidopsis thaliana OX=3702 GN=At4g13040 PE=2 SV=2)

HSP 1 Score: 179.1 bits (453), Expect = 5.6e-44
Identity = 105/202 (51.98%), Postives = 130/202 (64.36%), Query Frame = 0


Query: 1   MVSLRRRRLLGLCSGKSSFVAPLPKF----------SDNGTAPENPSPSNKLVT--VHPM 60
           MVSLRRRRLLGLC G + +V PLP            + N  A  NP P+  + T  V   
Sbjct: 1   MVSLRRRRLLGLCCGPNGYVTPLPFLTAEEMITGIPNPNARAAYNPGPAETVTTVIVEKK 60

Query: 61  SSDDVNLTDRSSVVNMEPNFASASDLTSQKEQSNQPASGHPLKHRKRHRRKNSHNQELTI 120
           + ++ +   RS  ++   ++   SD++     S  P    P K RK+HRRK  HNQE  +
Sbjct: 61  AIEERSRRTRSKHMHFRSDY---SDISPVNSDSISP-KYQPPKRRKQHRRKRVHNQEPCL 120

Query: 121 MRGVYFKNMKWQAAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELPEDEKQEL 180
           MRGVY+KNMKWQAAIKV+KKQIHLGTF SQEEAA LYDRAAF+CGREPNFEL E+  +EL
Sbjct: 121 MRGVYYKNMKWQAAIKVEKKQIHLGTFSSQEEAARLYDRAAFMCGREPNFELSEEVIREL 180

Query: 181 QKFKWEDFLAMTRHAITNKKHK 191
           ++  WE+FL  TR  ITNKK K
Sbjct: 181 KQQSWEEFLNCTRRTITNKKPK 198

[Close]

BLAST of MS008016.1 vs. ExPASy TrEMBL
Match: A0A6J1DYP4 (ethylene-responsive transcription factor-like protein At4g13040 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111025467 PE=4 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 4.4e-124
Identity = 226/228 (99.12%), Postives = 227/228 (99.56%), Query Frame = 0


Query: 1   MVSLRRRRLLGLCSGKSSFVAPLPKFSDNGTAPENPSPSNKLVTVHPMSSDDVNLTDRSS 60
           MVSLRRRRLLGLCSGKSSFVAPLPKFSDNGTAPENPSPSNKLVTVHPMSSDDVNLTDRSS
Sbjct: 1   MVSLRRRRLLGLCSGKSSFVAPLPKFSDNGTAPENPSPSNKLVTVHPMSSDDVNLTDRSS 60

Query: 61  VVNMEPNFASASDLTSQKEQSNQPASGHPLKHRKRHRRKNSHNQELTIMRGVYFKNMKWQ 120
           VVNMEPNFASASDLTSQKEQSNQPASGHPLKHRKRHRRKNSHNQELTIMRGVYFKNMKWQ
Sbjct: 61  VVNMEPNFASASDLTSQKEQSNQPASGHPLKHRKRHRRKNSHNQELTIMRGVYFKNMKWQ 120

Query: 121 AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELPEDEKQELQKFKWEDFLAMT 180
           AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELPEDEKQELQKFKWEDFLAMT
Sbjct: 121 AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELPEDEKQELQKFKWEDFLAMT 180

Query: 181 RHAITNKKHKRLGTGSPKQAGASSLPIDTTDYKHRFNGFPSPEDTNSS 229
           RHAITNKKHKRLGTGSPK+ GASSLPIDTTDYKHRFNGFPSPEDTNSS
Sbjct: 181 RHAITNKKHKRLGTGSPKKPGASSLPIDTTDYKHRFNGFPSPEDTNSS 228

[Close]

BLAST of MS008016.1 vs. ExPASy TrEMBL
Match: A0A6J1E2N6 (ethylene-responsive transcription factor-like protein At4g13040 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111025467 PE=4 SV=1)

HSP 1 Score: 446.8 bits (1148), Expect = 5.4e-122
Identity = 226/235 (96.17%), Postives = 227/235 (96.60%), Query Frame = 0


Query: 1   MVSLRRRRLLGLC-------SGKSSFVAPLPKFSDNGTAPENPSPSNKLVTVHPMSSDDV 60
           MVSLRRRRLLGLC       SGKSSFVAPLPKFSDNGTAPENPSPSNKLVTVHPMSSDDV
Sbjct: 1   MVSLRRRRLLGLCSELFWDFSGKSSFVAPLPKFSDNGTAPENPSPSNKLVTVHPMSSDDV 60

Query: 61  NLTDRSSVVNMEPNFASASDLTSQKEQSNQPASGHPLKHRKRHRRKNSHNQELTIMRGVY 120
           NLTDRSSVVNMEPNFASASDLTSQKEQSNQPASGHPLKHRKRHRRKNSHNQELTIMRGVY
Sbjct: 61  NLTDRSSVVNMEPNFASASDLTSQKEQSNQPASGHPLKHRKRHRRKNSHNQELTIMRGVY 120

Query: 121 FKNMKWQAAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELPEDEKQELQKFKW 180
           FKNMKWQAAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELPEDEKQELQKFKW
Sbjct: 121 FKNMKWQAAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELPEDEKQELQKFKW 180

Query: 181 EDFLAMTRHAITNKKHKRLGTGSPKQAGASSLPIDTTDYKHRFNGFPSPEDTNSS 229
           EDFLAMTRHAITNKKHKRLGTGSPK+ GASSLPIDTTDYKHRFNGFPSPEDTNSS
Sbjct: 181 EDFLAMTRHAITNKKHKRLGTGSPKKPGASSLPIDTTDYKHRFNGFPSPEDTNSS 235

[Close]

BLAST of MS008016.1 vs. ExPASy TrEMBL
Match: A0A6J1KRB7 (ethylene-responsive transcription factor-like protein At4g13040 OS=Cucurbita maxima OX=3661 GN=LOC111497571 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 4.0e-101
Identity = 192/228 (84.21%), Postives = 205/228 (89.91%), Query Frame = 0


Query: 1   MVSLRRRRLLGLCSGKSSFVAPLPKFSDNGTAPENPSPSNKLVTVHPMSSDDVNLTDRSS 60
           MVSLRRRRLLGLC+GKSS V  LPKFS+NG APENPSPS+K VTVHP SSDDV++TDRSS
Sbjct: 1   MVSLRRRRLLGLCAGKSSSVTSLPKFSENGIAPENPSPSSKFVTVHPTSSDDVHITDRSS 60

Query: 61  VVNMEPNFASASDLTSQKEQSNQPASGHPLKHRKRHRRKNSHNQELTIMRGVYFKNMKWQ 120
           VVNME +FA+A DLTS KEQSNQP SGHPLKHRKRHRRKNSHNQEL+IMRGVYFKNMKWQ
Sbjct: 61  VVNMESSFANALDLTSLKEQSNQPISGHPLKHRKRHRRKNSHNQELSIMRGVYFKNMKWQ 120

Query: 121 AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELPEDEKQELQKFKWEDFLAMT 180
           AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFEL E+EKQELQKFKWEDFLAMT
Sbjct: 121 AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELSEEEKQELQKFKWEDFLAMT 180

Query: 181 RHAITNKKHKRLGTGSPKQAGASSLPIDTTDYKHRFNGFPSPEDTNSS 229
           RHAITNKKHKRL  GSP + GASS  +D T++KHRF GFP  ED N S
Sbjct: 181 RHAITNKKHKRLIAGSPTKPGASS--VDNTEFKHRFIGFPVREDVNRS 226

[Close]

BLAST of MS008016.1 vs. ExPASy TrEMBL
Match: A0A6J1H7M5 (ethylene-responsive transcription factor-like protein At4g13040 OS=Cucurbita moschata OX=3662 GN=LOC111460898 PE=4 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 8.9e-101
Identity = 192/228 (84.21%), Postives = 205/228 (89.91%), Query Frame = 0


Query: 1   MVSLRRRRLLGLCSGKSSFVAPLPKFSDNGTAPENPSPSNKLVTVHPMSSDDVNLTDRSS 60
           MVSLRRRRLLGLC+GKSS VA LPKFS+NG A ENPSPS+K VTVHP SSDDV++TDRSS
Sbjct: 1   MVSLRRRRLLGLCAGKSSSVASLPKFSENGIALENPSPSSKFVTVHPTSSDDVHITDRSS 60

Query: 61  VVNMEPNFASASDLTSQKEQSNQPASGHPLKHRKRHRRKNSHNQELTIMRGVYFKNMKWQ 120
           VVNME +FA+A DLTS KEQSNQP SGHPLKHRKRHRRKNSHNQEL+IMRGVYFKNMKWQ
Sbjct: 61  VVNMESSFANALDLTSLKEQSNQPISGHPLKHRKRHRRKNSHNQELSIMRGVYFKNMKWQ 120

Query: 121 AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELPEDEKQELQKFKWEDFLAMT 180
           AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFEL E+EKQELQKFKWEDFLAMT
Sbjct: 121 AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELSEEEKQELQKFKWEDFLAMT 180

Query: 181 RHAITNKKHKRLGTGSPKQAGASSLPIDTTDYKHRFNGFPSPEDTNSS 229
           RHAITNKKHKRL  GSP + GASS  +D T++KHRF GFP  ED N S
Sbjct: 181 RHAITNKKHKRLSAGSPTKPGASS--VDDTEFKHRFIGFPVREDVNRS 226

[Close]

BLAST of MS008016.1 vs. ExPASy TrEMBL
Match: A0A0A0K8E3 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G352440 PE=4 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 7.5e-100
Identity = 190/229 (82.97%), Postives = 202/229 (88.21%), Query Frame = 0


Query: 1   MVSLRRRRLLGLCSGKSSFVAPLPKFSDNGTAPENPSPSNKLVTVHPMSSDDVNLTDRSS 60
           MVSLRRRRLLGLCSGKSSFVAPLPKFSD+ TA ENPSPSN L+T+HP SSDDVN+ DRSS
Sbjct: 1   MVSLRRRRLLGLCSGKSSFVAPLPKFSDHETATENPSPSNILITLHPKSSDDVNIKDRSS 60

Query: 61  VVNMEPNFASASDLTSQKEQSNQPASGHPLKHRKRHRRKNSHNQELTIMRGVYFKNMKWQ 120
           +VNME +F +A + TS  EQSNQP SGHPLKHRKRHRRKNSHNQEL+IMRGVYFKNMKWQ
Sbjct: 61  IVNMESSFRNALEWTSLNEQSNQPISGHPLKHRKRHRRKNSHNQELSIMRGVYFKNMKWQ 120

Query: 121 AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELPEDEKQELQKFKWEDFLAMT 180
           AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFEL E+EKQELQKFKWEDFLAMT
Sbjct: 121 AAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELSEEEKQELQKFKWEDFLAMT 180

Query: 181 RHAITNKKHKRLGT---GSPKQAGASSLPIDTTDYKHRFNGFPSPEDTN 227
           RHAITNKKHKRL      SPK+ GASSL ID T+ KHRFN  P PED N
Sbjct: 181 RHAITNKKHKRLSVSAGSSPKKLGASSLQIDNTELKHRFNEAPLPEDIN 229

[Close]

BLAST of MS008016.1 vs. TAIR 10
Match: AT4G13040.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 179.1 bits (453), Expect = 4.0e-45
Identity = 105/202 (51.98%), Postives = 130/202 (64.36%), Query Frame = 0


Query: 1   MVSLRRRRLLGLCSGKSSFVAPLPKF----------SDNGTAPENPSPSNKLVT--VHPM 60
           MVSLRRRRLLGLC G + +V PLP            + N  A  NP P+  + T  V   
Sbjct: 1   MVSLRRRRLLGLCCGPNGYVTPLPFLTAEEMITGIPNPNARAAYNPGPAETVTTVIVEKK 60

Query: 61  SSDDVNLTDRSSVVNMEPNFASASDLTSQKEQSNQPASGHPLKHRKRHRRKNSHNQELTI 120
           + ++ +   RS  ++   ++   SD++     S  P    P K RK+HRRK  HNQE  +
Sbjct: 61  AIEERSRRTRSKHMHFRSDY---SDISPVNSDSISP-KYQPPKRRKQHRRKRVHNQEPCL 120

Query: 121 MRGVYFKNMKWQAAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELPEDEKQEL 180
           MRGVY+KNMKWQAAIKV+KKQIHLGTF SQEEAA LYDRAAF+CGREPNFEL E+  +EL
Sbjct: 121 MRGVYYKNMKWQAAIKVEKKQIHLGTFSSQEEAARLYDRAAFMCGREPNFELSEEVIREL 180

Query: 181 QKFKWEDFLAMTRHAITNKKHK 191
           ++  WE+FL  TR  ITNKK K
Sbjct: 181 KQQSWEEFLNCTRRTITNKKPK 198

[Close]

BLAST of MS008016.1 vs. TAIR 10
Match: AT4G13040.3 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 179.1 bits (453), Expect = 4.0e-45
Identity = 105/202 (51.98%), Postives = 130/202 (64.36%), Query Frame = 0


Query: 1   MVSLRRRRLLGLCSGKSSFVAPLPKF----------SDNGTAPENPSPSNKLVT--VHPM 60
           MVSLRRRRLLGLC G + +V PLP            + N  A  NP P+  + T  V   
Sbjct: 21  MVSLRRRRLLGLCCGPNGYVTPLPFLTAEEMITGIPNPNARAAYNPGPAETVTTVIVEKK 80

Query: 61  SSDDVNLTDRSSVVNMEPNFASASDLTSQKEQSNQPASGHPLKHRKRHRRKNSHNQELTI 120
           + ++ +   RS  ++   ++   SD++     S  P    P K RK+HRRK  HNQE  +
Sbjct: 81  AIEERSRRTRSKHMHFRSDY---SDISPVNSDSISP-KYQPPKRRKQHRRKRVHNQEPCL 140

Query: 121 MRGVYFKNMKWQAAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELPEDEKQEL 180
           MRGVY+KNMKWQAAIKV+KKQIHLGTF SQEEAA LYDRAAF+CGREPNFEL E+  +EL
Sbjct: 141 MRGVYYKNMKWQAAIKVEKKQIHLGTFSSQEEAARLYDRAAFMCGREPNFELSEEVIREL 200

Query: 181 QKFKWEDFLAMTRHAITNKKHK 191
           ++  WE+FL  TR  ITNKK K
Sbjct: 201 KQQSWEEFLNCTRRTITNKKPK 218

[Close]

BLAST of MS008016.1 vs. TAIR 10
Match: AT4G13040.2 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 152.5 bits (384), Expect = 4.0e-37
Identity = 75/105 (71.43%), Postives = 85/105 (80.95%), Query Frame = 0


Query: 86  SGHPLKHRKRHRRKNSHNQELTIMRGVYFKNMKWQAAIKVDKKQIHLGTFGSQEEAAHLY 145
           S  P K RK+HRRK  HNQE  +MRGVY+KNMKWQAAIKV+KKQIHLGTF SQEEAA LY
Sbjct: 38  SDQPPKRRKQHRRKRVHNQEPCLMRGVYYKNMKWQAAIKVEKKQIHLGTFSSQEEAARLY 97

Query: 146 DRAAFVCGREPNFELPEDEKQELQKFKWEDFLAMTRHAITNKKHK 191
           DRAAF+CGREPNFEL E+  +EL++  WE+FL  TR  ITNKK K
Sbjct: 98  DRAAFMCGREPNFELSEEVIRELKQQSWEEFLNCTRRTITNKKPK 142

[Close]

BLAST of MS008016.1 vs. TAIR 10
Match: AT4G37750.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 41.6 bits (96), Expect = 1.0e-03
Identity = 24/57 (42.11%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 97  RRKNSHNQELTIMRGV--YFKNMKWQAAI--KVDKKQIHLGTFGSQEEAAHLYDRAA 150
           R+ +  ++  +I RGV  + ++ +WQA I      K ++LGTFG+QEEAA  YD AA
Sbjct: 374 RKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDVAA 430

The following BLAST results are available for this feature:

BLAST of MS008016.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159022.1	9.1e-124	99.12	ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Momo...	[more]
XP_022159021.1	1.1e-121	96.17	ethylene-responsive transcription factor-like protein At4g13040 isoform X1 [Momo...	[more]
XP_038899853.1	8.0e-104	85.90	ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Beni...	[more]
XP_038899850.1	3.3e-102	84.78	ethylene-responsive transcription factor-like protein At4g13040 isoform X1 [Beni...	[more]
XP_023004160.1	8.2e-101	84.21	ethylene-responsive transcription factor-like protein At4g13040 [Cucurbita maxim...	[more]

BLAST of MS008016.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q56XP9	5.6e-44	51.98	Ethylene-responsive transcription factor-like protein At4g13040 OS=Arabidopsis t...	[more]

BLAST of MS008016.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DYP4	4.4e-124	99.12	ethylene-responsive transcription factor-like protein At4g13040 isoform X2 OS=Mo...	[more]
A0A6J1E2N6	5.4e-122	96.17	ethylene-responsive transcription factor-like protein At4g13040 isoform X1 OS=Mo...	[more]
A0A6J1KRB7	4.0e-101	84.21	ethylene-responsive transcription factor-like protein At4g13040 OS=Cucurbita max...	[more]
A0A6J1H7M5	8.9e-101	84.21	ethylene-responsive transcription factor-like protein At4g13040 OS=Cucurbita mos...	[more]
A0A0A0K8E3	7.5e-100	82.97	AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G352440 PE=...	[more]

BLAST of MS008016.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G13040.1	4.0e-45	51.98	Integrase-type DNA-binding superfamily protein	[more]
AT4G13040.3	4.0e-45	51.98	Integrase-type DNA-binding superfamily protein	[more]
AT4G13040.2	4.0e-37	71.43	Integrase-type DNA-binding superfamily protein	[more]
AT4G37750.1	1.0e-03	42.11	Integrase-type DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 108..167 e-value: 1.3E-4 score: 26.3
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 110..150 e-value: 5.4E-7 score: 29.8
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 91..150 score: 8.860314
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 110..160 e-value: 9.6E-10 score: 40.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 187..228
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..87
None	No IPR available	PANTHER	PTHR32467:SF4	OS02G0499000 PROTEIN	coord: 1..214
None	No IPR available	PANTHER	PTHR32467	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	coord: 1..214
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 108..152

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS008016	MS008016	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS008016.1-cds	MS008016.1-cds-scaffold284:45443..45485	CDS
MS008016.1-cds	MS008016.1-cds-scaffold284:45632..45762	CDS
MS008016.1-cds	MS008016.1-cds-scaffold284:46632..46716	CDS
MS008016.1-cds	MS008016.1-cds-scaffold284:47173..47353	CDS
MS008016.1-cds	MS008016.1-cds-scaffold284:47686..47807	CDS
MS008016.1-cds	MS008016.1-cds-scaffold284:47896..48017	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS008016.1	MS008016.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity