MS008016.1 (mRNA) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTGAGCTTAAGAAGGCGCAGGCTCTTGGGACTGTGCTCTGGTATGTTTAGATATTCTGTGAGATAAATGACCGTTTTTTTTTTTTTTAAATGAAGTAATCATCATTGTCTTTGTTTCCTATCTCACTAGGTGCTCTTGAATTCATTTGATTAAATCTGTTTGTAGAACTTTTTTGGGACTTTTCAGGGAAAAGTTCATTTGTAGCTCCACTTCCTAAGTTTTCAGATAACGGAACCGCTCCCGAAAATCCTAGCCCGAGTAACAAACTAGTCACAGTGCATCCCATGTCTTCTGATGATGTTAACCTCACAGATAGGGTAAGATGACATTCTTTAAAATTTCTCTCACAATTTTCCATATGCATGTGACTGTGTTAACGTTTCTATGAAGCTATTCCCATAATCAAGTTGATTTGTTTAGATTTCTACTTAATTCCCCCAATTTCGTTACCGATTATTGATATTTGAAGTGATAATTAAACCTAGATAACTTTATTGGTTAAGCTTCCTTGTTTTTGTTGATAAGAGTCAGTTGAATATTGTATGCATTCCAAAACATCTCTGGTTGGAGAGGTTTGTTTTAAAGCTTCATCTTAGATAATACTTTTGACCTGCTAAATCTGCAGAAAGTCAGAGTATCGATCGAGATCTGTAAACACGCTCTCTCGCTTCTATAAGTTAAGATGAACAAAATGTTTGCAATACAACTAGGAATGTAAGCCTTTGCTGGATTGAAAGGAAAAAACTTGTTGTTTTATATTTTGTCTTCCTTTTATCTGAAAAGGCCTGTGAAGCTATCTTGGGTTGTCGATTGAGATCTTTAAAGACTCTTGTTTCTATAAGTTAATACACATTTCAAGGAAAAACATATTGGTTAAAGGTAATAAGAAAAAACCGATTTTTATTGAATTACATTTATGCAACCGACTTGAAATTTCGAGTTCATCATTGGAGGGTTGTGTGTCATAGATATAATTCTACCATGATTTGGTTGATGACCATTCATGCAATTGATTTGGTTTCTTTCATTACCGTTGAAAAGTCCAGGTCTAGATCTACCAAGTCGAGTAAAACTCCGATACTTACTGTGCAATTTGAATTACCAGGTTCATTATATTTTCTTTCTGAGCTTGCTTGTTGAATTATAAATCTGACAGTTACGTTCCAAACTCTATCTTTTGTTACAGAGCTCTGTTGTGAATATGGAACCCAATTTTGCAAGTGCATCGGATTTGACCTCGCAGAAAGAACAATCTAATCAGCCAGCGTCAGGTTATCTGCGAACCGTGATCAATAGTTTAATCCTTGTTTATGGGATCATGCTTTTGAGATCTATAGTTTTCATATATGTATAAATCAGGATGCTTTATTTTTGCTTAAATTTCAGCTGTGGCCACTCTTTCATTCGTGTGGTAATGAAATCTTATACGTGGTTTGGATTTTTGAGCTTGTCCATCTCCCTTGTAATTTAAAAGTTATGAGTTCTTTTCATAGTTCCTTAAACCCGATTCTGCGGTTGGCACATCTATCACTTCATTTATAATTTGCGGTCGGTACAGCGAATGGCATTGTGACGACCACACATAAGACACTTGTTTTGTGCATTAACATATTAGTACTGTCGCAAGGATCGTAATTGTCAGTCGTCCTTCTATCACATTGTCCAAAATGTTTGAGATTCAGCTTTCTGCATTTTGTCGCTCCTAATACATGGACTTGTTTTTGCAGGGCATCCACTAAAACATAGAAAGAGACATAGGAGAAAGAACTCTCACAATCAAGAACTGACGATTATGAGAGGTGTCTATTTCAAGAACATGAAATGGCAGGCTGCGATTAAGGTAGACAAGAAACAGATACATTTGGGGACGTTTGGTTCACAAGAAGAGGCTGCTCATTTGTACGATAGGTATTCGCTTCCATATCAACTCTTATCTTGACTTTTAACATTTCCTATATTCTGTTGTAACAAACAGCATTTGCAAACTCCGACCAAGATATTATACATAAATACATACATACATATATATATAGTATACGAACTACCCGAGATATGATAGGCATTATGTTGTATATGCTTCTCACTGTGTAGTTGAGCGTTGGACTTAAATTATTTAGTTCATTTACCTGTCTAAGTTGTTAAGTGAACAAGGGAAAGAACTCGAAGCATTTCGATAAGCATCTCATCAATTCTGGATCGGTGTAGGTACTATAAGCTCACTAGTCTTTTCGGTTATGCAGAGCTGCTTTTGTGTGCGGACGGGAACCAAACTTCGAACTGCCAGAGGACGAGAAGCAAGAACTCCAGAAGTTCAAATGGGAAGACTTCCTAGCAATGACCCGCCATGCTATTACGAACAAAAGTAGTAGTTGCCTTAGCTCCTCTCAAAATCCTTTCTCGTTTTCTCCATACGTCAGATTTGATTCGCTAATCGTTTTAACATTTTTCAGAGCACAAGAGACTTGGCACAGGATCTCCGAAGCAGGCCGGAGCTTCATCACTACCAATCGACACCACCGACTACAAGCACAGGTTCAACGGGTTTCCCTCGCCCGAAGACACTAACTCATCC ATGGTGAGCTTAAGAAGGCGCAGGCTCTTGGGACTGTGCTCTGGGAAAAGTTCATTTGTAGCTCCACTTCCTAAGTTTTCAGATAACGGAACCGCTCCCGAAAATCCTAGCCCGAGTAACAAACTAGTCACAGTGCATCCCATGTCTTCTGATGATGTTAACCTCACAGATAGGAGCTCTGTTGTGAATATGGAACCCAATTTTGCAAGTGCATCGGATTTGACCTCGCAGAAAGAACAATCTAATCAGCCAGCGTCAGGGCATCCACTAAAACATAGAAAGAGACATAGGAGAAAGAACTCTCACAATCAAGAACTGACGATTATGAGAGGTGTCTATTTCAAGAACATGAAATGGCAGGCTGCGATTAAGGTAGACAAGAAACAGATACATTTGGGGACGTTTGGTTCACAAGAAGAGGCTGCTCATTTGTACGATAGAGCTGCTTTTGTGTGCGGACGGGAACCAAACTTCGAACTGCCAGAGGACGAGAAGCAAGAACTCCAGAAGTTCAAATGGGAAGACTTCCTAGCAATGACCCGCCATGCTATTACGAACAAAAAGCACAAGAGACTTGGCACAGGATCTCCGAAGCAGGCCGGAGCTTCATCACTACCAATCGACACCACCGACTACAAGCACAGGTTCAACGGGTTTCCCTCGCCCGAAGACACTAACTCATCC ATGGTGAGCTTAAGAAGGCGCAGGCTCTTGGGACTGTGCTCTGGGAAAAGTTCATTTGTAGCTCCACTTCCTAAGTTTTCAGATAACGGAACCGCTCCCGAAAATCCTAGCCCGAGTAACAAACTAGTCACAGTGCATCCCATGTCTTCTGATGATGTTAACCTCACAGATAGGAGCTCTGTTGTGAATATGGAACCCAATTTTGCAAGTGCATCGGATTTGACCTCGCAGAAAGAACAATCTAATCAGCCAGCGTCAGGGCATCCACTAAAACATAGAAAGAGACATAGGAGAAAGAACTCTCACAATCAAGAACTGACGATTATGAGAGGTGTCTATTTCAAGAACATGAAATGGCAGGCTGCGATTAAGGTAGACAAGAAACAGATACATTTGGGGACGTTTGGTTCACAAGAAGAGGCTGCTCATTTGTACGATAGAGCTGCTTTTGTGTGCGGACGGGAACCAAACTTCGAACTGCCAGAGGACGAGAAGCAAGAACTCCAGAAGTTCAAATGGGAAGACTTCCTAGCAATGACCCGCCATGCTATTACGAACAAAAAGCACAAGAGACTTGGCACAGGATCTCCGAAGCAGGCCGGAGCTTCATCACTACCAATCGACACCACCGACTACAAGCACAGGTTCAACGGGTTTCCCTCGCCCGAAGACACTAACTCATCC MVSLRRRRLLGLCSGKSSFVAPLPKFSDNGTAPENPSPSNKLVTVHPMSSDDVNLTDRSSVVNMEPNFASASDLTSQKEQSNQPASGHPLKHRKRHRRKNSHNQELTIMRGVYFKNMKWQAAIKVDKKQIHLGTFGSQEEAAHLYDRAAFVCGREPNFELPEDEKQELQKFKWEDFLAMTRHAITNKKHKRLGTGSPKQAGASSLPIDTTDYKHRFNGFPSPEDTNSS Homology
BLAST of MS008016.1 vs. NCBI nr
Match: XP_022159022.1 (ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Momordica charantia]) HSP 1 Score: 453.8 bits (1166), Expect = 9.1e-124 Identity = 226/228 (99.12%), Postives = 227/228 (99.56%), Query Frame = 0
BLAST of MS008016.1 vs. NCBI nr
Match: XP_022159021.1 (ethylene-responsive transcription factor-like protein At4g13040 isoform X1 [Momordica charantia]) HSP 1 Score: 446.8 bits (1148), Expect = 1.1e-121 Identity = 226/235 (96.17%), Postives = 227/235 (96.60%), Query Frame = 0
BLAST of MS008016.1 vs. NCBI nr
Match: XP_038899853.1 (ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Benincasa hispida] >XP_038899854.1 ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Benincasa hispida] >XP_038899855.1 ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Benincasa hispida]) HSP 1 Score: 387.5 bits (994), Expect = 8.0e-104 Identity = 195/227 (85.90%), Postives = 207/227 (91.19%), Query Frame = 0
BLAST of MS008016.1 vs. NCBI nr
Match: XP_038899850.1 (ethylene-responsive transcription factor-like protein At4g13040 isoform X1 [Benincasa hispida] >XP_038899851.1 ethylene-responsive transcription factor-like protein At4g13040 isoform X1 [Benincasa hispida] >XP_038899852.1 ethylene-responsive transcription factor-like protein At4g13040 isoform X1 [Benincasa hispida]) HSP 1 Score: 382.1 bits (980), Expect = 3.3e-102 Identity = 195/230 (84.78%), Postives = 207/230 (90.00%), Query Frame = 0
BLAST of MS008016.1 vs. NCBI nr
Match: XP_023004160.1 (ethylene-responsive transcription factor-like protein At4g13040 [Cucurbita maxima] >XP_023004161.1 ethylene-responsive transcription factor-like protein At4g13040 [Cucurbita maxima] >XP_023004162.1 ethylene-responsive transcription factor-like protein At4g13040 [Cucurbita maxima]) HSP 1 Score: 377.5 bits (968), Expect = 8.2e-101 Identity = 192/228 (84.21%), Postives = 205/228 (89.91%), Query Frame = 0
BLAST of MS008016.1 vs. ExPASy Swiss-Prot
Match: Q56XP9 (Ethylene-responsive transcription factor-like protein At4g13040 OS=Arabidopsis thaliana OX=3702 GN=At4g13040 PE=2 SV=2) HSP 1 Score: 179.1 bits (453), Expect = 5.6e-44 Identity = 105/202 (51.98%), Postives = 130/202 (64.36%), Query Frame = 0
BLAST of MS008016.1 vs. ExPASy TrEMBL
Match: A0A6J1DYP4 (ethylene-responsive transcription factor-like protein At4g13040 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111025467 PE=4 SV=1) HSP 1 Score: 453.8 bits (1166), Expect = 4.4e-124 Identity = 226/228 (99.12%), Postives = 227/228 (99.56%), Query Frame = 0
BLAST of MS008016.1 vs. ExPASy TrEMBL
Match: A0A6J1E2N6 (ethylene-responsive transcription factor-like protein At4g13040 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111025467 PE=4 SV=1) HSP 1 Score: 446.8 bits (1148), Expect = 5.4e-122 Identity = 226/235 (96.17%), Postives = 227/235 (96.60%), Query Frame = 0
BLAST of MS008016.1 vs. ExPASy TrEMBL
Match: A0A6J1KRB7 (ethylene-responsive transcription factor-like protein At4g13040 OS=Cucurbita maxima OX=3661 GN=LOC111497571 PE=4 SV=1) HSP 1 Score: 377.5 bits (968), Expect = 4.0e-101 Identity = 192/228 (84.21%), Postives = 205/228 (89.91%), Query Frame = 0
BLAST of MS008016.1 vs. ExPASy TrEMBL
Match: A0A6J1H7M5 (ethylene-responsive transcription factor-like protein At4g13040 OS=Cucurbita moschata OX=3662 GN=LOC111460898 PE=4 SV=1) HSP 1 Score: 376.3 bits (965), Expect = 8.9e-101 Identity = 192/228 (84.21%), Postives = 205/228 (89.91%), Query Frame = 0
BLAST of MS008016.1 vs. ExPASy TrEMBL
Match: A0A0A0K8E3 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G352440 PE=4 SV=1) HSP 1 Score: 373.2 bits (957), Expect = 7.5e-100 Identity = 190/229 (82.97%), Postives = 202/229 (88.21%), Query Frame = 0
BLAST of MS008016.1 vs. TAIR 10
Match: AT4G13040.1 (Integrase-type DNA-binding superfamily protein ) HSP 1 Score: 179.1 bits (453), Expect = 4.0e-45 Identity = 105/202 (51.98%), Postives = 130/202 (64.36%), Query Frame = 0
BLAST of MS008016.1 vs. TAIR 10
Match: AT4G13040.3 (Integrase-type DNA-binding superfamily protein ) HSP 1 Score: 179.1 bits (453), Expect = 4.0e-45 Identity = 105/202 (51.98%), Postives = 130/202 (64.36%), Query Frame = 0
BLAST of MS008016.1 vs. TAIR 10
Match: AT4G13040.2 (Integrase-type DNA-binding superfamily protein ) HSP 1 Score: 152.5 bits (384), Expect = 4.0e-37 Identity = 75/105 (71.43%), Postives = 85/105 (80.95%), Query Frame = 0
BLAST of MS008016.1 vs. TAIR 10
Match: AT4G37750.1 (Integrase-type DNA-binding superfamily protein ) HSP 1 Score: 41.6 bits (96), Expect = 1.0e-03 Identity = 24/57 (42.11%), Postives = 36/57 (63.16%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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