MS002788 (gene) Bitter gourd (TR) v1

Overview


Name	MS002788
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	40S ribosomal protein S9
Location	scaffold66: 610786 .. 611737 (+)
RNA-Seq Expression	MS002788
Synteny	MS002788

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTGTCATTATATATATAGATGGGAAGACGTTCAAGAAACCTCGACGCCCTTATGAGAAGGAGCGTCTGGATGCAGAACTGAAGCTTGTTGGTGAATACGGACTTCGGTGCAAAAGGGAGCTATGGCGGGTTCAATATGCACTGAGCAGAATCCGTAATAATGCACGTATGCTTTTAACACTTGATGAAAAGAATCCGCGTAGGATTTTTGAGGGAGAGGCGCTGCTTAGGAGGATGAACAGGTACGGCCTTTTGGATGAGAGTCAGAACAAGCTTGATTATGTGTTGGCACTTACTGTGGAAAATTTCCTTGAGCGTCGTCTACAAACTCTCGTGTTCAAGTCTGGAATGGCAAAGTCCATCCACCATGCTAGAGTGCTCATCAGGCAGAGGCATATAAGGTAGAGTGGTTTGAGTTTGATTATGTTCTTCCCCCAAGAATTATACTCTAATTTTTTACTCTAATGCATGCCACTAAGATTCTTTCTTGTTAAATTGTATTAAATATCCTAAACTGTATGATTGGGTTGGTTTTCAACTCATTTTATGTCTTATCAAGGAGGAGAAGGATTATGCTATTTTGAACAAATGCTGGCGTTTGATGATGAAAGATTTTGTTTAGACAATGAAAAATTTAAAACAATAGTTGCATAACTGAAACCAATCCTATGATTTAGCATTCCTTTTCTCATGAGCTGGTTTTGATTTGTTTTTTGACCTTGTATGAGATTCTTTTATGCTCGATGGTCAAGATCATTCTTGGGTTTGTAGGGTTGGGAGGCAGGTGGTTAATATCCCATCTTTCATGGTGAGAGTTGATTCTCAAAAGCACATAGACTTCTCTCTCACAAGTCCATTCGGCGGTGGACGCCCCGGAAGAGTGAAGAGAAAGAACCAGAAGGCAGCTGCCAAGAAGGCCGCTGGTGGAGATGGAGACGAAGAAGATGAGGAT

mRNA sequence

TCTGTCATTATATATATAGATGGGAAGACGTTCAAGAAACCTCGACGCCCTTATGAGAAGGAGCGTCTGGATGCAGAACTGAAGCTTGTTGGTGAATACGGACTTCGGTGCAAAAGGGAGCTATGGCGGGTTCAATATGCACTGAGCAGAATCCGTAATAATGCACGTATGCTTTTAACACTTGATGAAAAGAATCCGCGTAGGATTTTTGAGGGAGAGGCGCTGCTTAGGAGGATGAACAGGTACGGCCTTTTGGATGAGAGTCAGAACAAGCTTGATTATGTGTTGGCACTTACTGTGGAAAATTTCCTTGAGCGTCGTCTACAAACTCTCGTGTTCAAGTCTGGAATGGCAAAGTCCATCCACCATGCTAGAGTGCTCATCAGGCAGAGGCATATAAGGGTTGGGAGGCAGGTGGTTAATATCCCATCTTTCATGGTGAGAGTTGATTCTCAAAAGCACATAGACTTCTCTCTCACAAGTCCATTCGGCGGTGGACGCCCCGGAAGAGTGAAGAGAAAGAACCAGAAGGCAGCTGCCAAGAAGGCCGCTGGTGGAGATGGAGACGAAGAAGATGAGGAT

Coding sequence (CDS)

TCTGTCATTATATATATAGATGGGAAGACGTTCAAGAAACCTCGACGCCCTTATGAGAAGGAGCGTCTGGATGCAGAACTGAAGCTTGTTGGTGAATACGGACTTCGGTGCAAAAGGGAGCTATGGCGGGTTCAATATGCACTGAGCAGAATCCGTAATAATGCACGTATGCTTTTAACACTTGATGAAAAGAATCCGCGTAGGATTTTTGAGGGAGAGGCGCTGCTTAGGAGGATGAACAGGTACGGCCTTTTGGATGAGAGTCAGAACAAGCTTGATTATGTGTTGGCACTTACTGTGGAAAATTTCCTTGAGCGTCGTCTACAAACTCTCGTGTTCAAGTCTGGAATGGCAAAGTCCATCCACCATGCTAGAGTGCTCATCAGGCAGAGGCATATAAGGGTTGGGAGGCAGGTGGTTAATATCCCATCTTTCATGGTGAGAGTTGATTCTCAAAAGCACATAGACTTCTCTCTCACAAGTCCATTCGGCGGTGGACGCCCCGGAAGAGTGAAGAGAAAGAACCAGAAGGCAGCTGCCAAGAAGGCCGCTGGTGGAGATGGAGACGAAGAAGATGAGGAT

Protein sequence

SVIIYIDGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGDGDEEDED

Homology

[Close]

BLAST of MS002788 vs. NCBI nr
Match: KAG7025173.1 (40S ribosomal protein S9-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 371.7 bits (953), Expect = 3.9e-99
Identity = 188/191 (98.43%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 4   IYIDGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE 63
           +Y+DGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE
Sbjct: 6   LYVDGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE 65

Query: 64  KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH 123
           KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH
Sbjct: 66  KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH 125

Query: 124 ARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKA 183
           ARVLIRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKA
Sbjct: 126 ARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKA 185

Query: 184 AGGDGDEEDED 195
           AGGDGDEEDED
Sbjct: 186 AGGDGDEEDED 196

[Close]

BLAST of MS002788 vs. NCBI nr
Match: PON57336.1 (Ribosomal protein [Parasponia andersonii] >PON93633.1 Ribosomal protein [Trema orientale])

HSP 1 Score: 367.5 bits (942), Expect = 7.3e-98
Identity = 187/191 (97.91%), Postives = 190/191 (99.48%), Query Frame = 0


Query: 4   IYIDGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE 63
           ++ DGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE
Sbjct: 1   MHSDGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE 60

Query: 64  KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH 123
           KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH
Sbjct: 61  KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH 120

Query: 124 ARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKA 183
           ARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR+NQKAAAKKA
Sbjct: 121 ARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQKAAAKKA 180

Query: 184 AGGDGDEEDED 195
           AGGDGDEEDED
Sbjct: 181 AGGDGDEEDED 191

[Close]

BLAST of MS002788 vs. NCBI nr
Match: EXB49964.1 (40S ribosomal protein S9-2 [Morus notabilis])

HSP 1 Score: 366.7 bits (940), Expect = 1.2e-97
Identity = 187/188 (99.47%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 7   DGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNP 66
           DGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNP
Sbjct: 84  DGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNP 143

Query: 67  RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARV 126
           RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARV
Sbjct: 144 RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARV 203

Query: 127 LIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGG 186
           LIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR+NQKAAAKKAAGG
Sbjct: 204 LIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQKAAAKKAAGG 263

Query: 187 DGDEEDED 195
           DGDEEDED
Sbjct: 264 DGDEEDED 271

[Close]

BLAST of MS002788 vs. NCBI nr
Match: XP_022142910.1 (40S ribosomal protein S9-2 [Momordica charantia] >XP_022151237.1 40S ribosomal protein S9-2 [Momordica charantia] >XP_038893425.1 40S ribosomal protein S9-2 [Benincasa hispida])

HSP 1 Score: 365.5 bits (937), Expect = 2.8e-97
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 8   GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR 67
           GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR
Sbjct: 11  GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR 70

Query: 68  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 127
           RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL
Sbjct: 71  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 130

Query: 128 IRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD 187
           IRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD
Sbjct: 131 IRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD 190

Query: 188 GDEEDED 195
           GDEEDED
Sbjct: 191 GDEEDED 197

[Close]

BLAST of MS002788 vs. NCBI nr
Match: XP_004135180.1 (40S ribosomal protein S9-2 [Cucumis sativus] >XP_004141548.1 40S ribosomal protein S9-2 [Cucumis sativus] >XP_008446334.1 PREDICTED: 40S ribosomal protein S9-2 [Cucumis melo] >XP_008459594.1 PREDICTED: 40S ribosomal protein S9-2 [Cucumis melo] >XP_022925366.1 40S ribosomal protein S9-2-like [Cucurbita moschata] >XP_022957390.1 40S ribosomal protein S9-2-like [Cucurbita moschata] >XP_022973538.1 40S ribosomal protein S9-2-like [Cucurbita maxima] >XP_022987602.1 40S ribosomal protein S9-2-like [Cucurbita maxima] >XP_023535520.1 40S ribosomal protein S9-2-like [Cucurbita pepo subsp. pepo] >XP_023552855.1 40S ribosomal protein S9-2-like [Cucurbita pepo subsp. pepo] >XP_038891088.1 40S ribosomal protein S9-2-like [Benincasa hispida] >KAA0034405.1 40S ribosomal protein S9-2-like [Cucumis melo var. makuwa] >KAG6592358.1 40S ribosomal protein S9-2, partial [Cucurbita argyrosperma subsp. sororia] >KAA0039283.1 40S ribosomal protein S9-2-like [Cucumis melo var. makuwa] >KAG6601424.1 40S ribosomal protein S9-2, partial [Cucurbita argyrosperma subsp. sororia] >KGN51904.1 hypothetical protein Csa_008331 [Cucumis sativus])

HSP 1 Score: 364.4 bits (934), Expect = 6.1e-97
Identity = 186/187 (99.47%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 8   GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR 67
           GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR
Sbjct: 11  GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR 70

Query: 68  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 127
           RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL
Sbjct: 71  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 130

Query: 128 IRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD 187
           IRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD
Sbjct: 131 IRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD 190

Query: 188 GDEEDED 195
           GDEEDED
Sbjct: 191 GDEEDED 197

[Close]

BLAST of MS002788 vs. ExPASy Swiss-Prot
Match: Q9FLF0 (40S ribosomal protein S9-2 OS=Arabidopsis thaliana OX=3702 GN=RPS9C PE=1 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 8.6e-94
Identity = 172/187 (91.98%), Postives = 183/187 (97.86%), Query Frame = 0


Query: 8   GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR 67
           GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQY LSRIRN AR LLTLDEKNPR
Sbjct: 11  GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARELLTLDEKNPR 70

Query: 68  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 127
           RIFEGEALLRRMNRYGLLDE+QNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHHARVL
Sbjct: 71  RIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVL 130

Query: 128 IRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD 187
           IRQRHIRVGRQ+VNIPSFMVRV+SQKH+DFSLTSPFGGGRPGRVKR+N++A AKKA+GGD
Sbjct: 131 IRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNERAGAKKASGGD 190

Query: 188 GDEEDED 195
           GDE+DE+
Sbjct: 191 GDEDDEE 197

[Close]

BLAST of MS002788 vs. ExPASy Swiss-Prot
Match: Q9LXG1 (40S ribosomal protein S9-1 OS=Arabidopsis thaliana OX=3702 GN=RPS9B PE=1 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 9.2e-88
Identity = 165/188 (87.77%), Postives = 181/188 (96.28%), Query Frame = 0


Query: 8   GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR 67
           GKTFK PRRPYEKERLD+ELKLVGEYGLR KRELWRVQY+LSRIRN AR LLTLDEK+PR
Sbjct: 11  GKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSPR 70

Query: 68  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 127
           RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHH+RVL
Sbjct: 71  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVL 130

Query: 128 IRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGG- 187
           IRQRHIRVG+Q+VNIPSFMVR+DSQKHIDF+LTSPFGGGRPGRVKR+N+K+A+KKA+GG 
Sbjct: 131 IRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRNEKSASKKASGGG 190

Query: 188 --DGDEED 193
             DGD+E+
Sbjct: 191 DADGDDEE 198

[Close]

BLAST of MS002788 vs. ExPASy Swiss-Prot
Match: P52810 (40S ribosomal protein S9 OS=Podospora anserina OX=2587412 GN=RPS9 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 6.7e-70
Identity = 139/187 (74.33%), Postives = 161/187 (86.10%), Query Frame = 0


Query: 9   KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPRR 68
           KT K PRRP+E  RLD+ELKLVGEYGLR KRE+WRV   LS+IR  AR LLTLDEK+P+R
Sbjct: 8   KTAKVPRRPFEAARLDSELKLVGEYGLRNKREVWRVLLTLSKIRRAARELLTLDEKDPKR 67

Query: 69  IFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLI 128
           +FEG AL+RR+ R G+LDES+ KLDYVLAL  E+FLERRLQTLV+K G+AKSIHHARVLI
Sbjct: 68  LFEGNALIRRLVRVGVLDESRMKLDYVLALKAEDFLERRLQTLVYKLGLAKSIHHARVLI 127

Query: 129 RQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGDG 188
           RQRHIRVG+Q+VN+PSF+VR+DSQKHIDF+LTSPFGGGRPGRV+RK     AK A GGDG
Sbjct: 128 RQRHIRVGKQIVNVPSFVVRLDSQKHIDFALTSPFGGGRPGRVRRKK----AKAAEGGDG 187

Query: 189 D-EEDED 195
           D EEDE+
Sbjct: 188 DAEEDEE 190

[Close]

BLAST of MS002788 vs. ExPASy Swiss-Prot
Match: A6QLG5 (40S ribosomal protein S9 OS=Bos taurus OX=9913 GN=RPS9 PE=2 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.9e-69
Identity = 133/184 (72.28%), Postives = 155/184 (84.24%), Query Frame = 0


Query: 9   KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPRR 68
           KT+  PRRP+EK RLD ELKL+GEYGLR KRE+WRV++ L++IR  AR LLTLDEK+PRR
Sbjct: 11  KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR 70

Query: 69  IFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLI 128
           +FEG ALLRR+ R G+LDE + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLI
Sbjct: 71  LFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLI 130

Query: 129 RQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGDG 188
           RQRHIRV +QVVNIPSF+VR+DSQKHIDFSL SP+GGGRPGRVKRKN K     A  GD 
Sbjct: 131 RQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDD 190

Query: 189 DEED 193
           +EED
Sbjct: 191 EEED 194

[Close]

BLAST of MS002788 vs. ExPASy Swiss-Prot
Match: P46781 (40S ribosomal protein S9 OS=Homo sapiens OX=9606 GN=RPS9 PE=1 SV=3)

HSP 1 Score: 263.5 bits (672), Expect = 1.9e-69
Identity = 133/184 (72.28%), Postives = 155/184 (84.24%), Query Frame = 0


Query: 9   KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPRR 68
           KT+  PRRP+EK RLD ELKL+GEYGLR KRE+WRV++ L++IR  AR LLTLDEK+PRR
Sbjct: 11  KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR 70

Query: 69  IFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLI 128
           +FEG ALLRR+ R G+LDE + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLI
Sbjct: 71  LFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLI 130

Query: 129 RQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGDG 188
           RQRHIRV +QVVNIPSF+VR+DSQKHIDFSL SP+GGGRPGRVKRKN K     A  GD 
Sbjct: 131 RQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDD 190

Query: 189 DEED 193
           +EED
Sbjct: 191 EEED 194

[Close]

BLAST of MS002788 vs. ExPASy TrEMBL
Match: A0A2P5C8D5 (Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_174530 PE=3 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 3.5e-98
Identity = 187/191 (97.91%), Postives = 190/191 (99.48%), Query Frame = 0


Query: 4   IYIDGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE 63
           ++ DGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE
Sbjct: 1   MHSDGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE 60

Query: 64  KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH 123
           KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH
Sbjct: 61  KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH 120

Query: 124 ARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKA 183
           ARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR+NQKAAAKKA
Sbjct: 121 ARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQKAAAKKA 180

Query: 184 AGGDGDEEDED 195
           AGGDGDEEDED
Sbjct: 181 AGGDGDEEDED 191

[Close]

BLAST of MS002788 vs. ExPASy TrEMBL
Match: A0A2P5F757 (Ribosomal protein OS=Trema orientale OX=63057 GN=TorRG33x02_106170 PE=3 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 3.5e-98
Identity = 187/191 (97.91%), Postives = 190/191 (99.48%), Query Frame = 0


Query: 4   IYIDGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE 63
           ++ DGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE
Sbjct: 1   MHSDGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE 60

Query: 64  KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH 123
           KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH
Sbjct: 61  KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH 120

Query: 124 ARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKA 183
           ARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR+NQKAAAKKA
Sbjct: 121 ARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQKAAAKKA 180

Query: 184 AGGDGDEEDED 195
           AGGDGDEEDED
Sbjct: 181 AGGDGDEEDED 191

[Close]

BLAST of MS002788 vs. ExPASy TrEMBL
Match: W9QQ56 (40S ribosomal protein S9-2 OS=Morus notabilis OX=981085 GN=L484_005300 PE=3 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 6.0e-98
Identity = 187/188 (99.47%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 7   DGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNP 66
           DGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNP
Sbjct: 84  DGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNP 143

Query: 67  RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARV 126
           RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARV
Sbjct: 144 RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARV 203

Query: 127 LIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGG 186
           LIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR+NQKAAAKKAAGG
Sbjct: 204 LIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQKAAAKKAAGG 263

Query: 187 DGDEEDED 195
           DGDEEDED
Sbjct: 264 DGDEEDED 271

[Close]

BLAST of MS002788 vs. ExPASy TrEMBL
Match: A0A6J1DCX8 (40S ribosomal protein S9-2 OS=Momordica charantia OX=3673 GN=LOC111019211 PE=3 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.3e-97
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 8   GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR 67
           GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR
Sbjct: 11  GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR 70

Query: 68  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 127
           RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL
Sbjct: 71  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 130

Query: 128 IRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD 187
           IRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD
Sbjct: 131 IRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD 190

Query: 188 GDEEDED 195
           GDEEDED
Sbjct: 191 GDEEDED 197

[Close]

BLAST of MS002788 vs. ExPASy TrEMBL
Match: A0A6J1JAT4 (40S ribosomal protein S9-2-like OS=Cucurbita maxima OX=3661 GN=LOC111485110 PE=3 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 3.0e-97
Identity = 186/187 (99.47%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 8   GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR 67
           GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR
Sbjct: 11  GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR 70

Query: 68  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 127
           RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL
Sbjct: 71  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 130

Query: 128 IRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD 187
           IRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD
Sbjct: 131 IRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD 190

Query: 188 GDEEDED 195
           GDEEDED
Sbjct: 191 GDEEDED 197

[Close]

BLAST of MS002788 vs. TAIR 10
Match: AT5G39850.1 (Ribosomal protein S4 )

HSP 1 Score: 344.4 bits (882), Expect = 6.1e-95
Identity = 172/187 (91.98%), Postives = 183/187 (97.86%), Query Frame = 0


Query: 8   GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR 67
           GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQY LSRIRN AR LLTLDEKNPR
Sbjct: 11  GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARELLTLDEKNPR 70

Query: 68  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 127
           RIFEGEALLRRMNRYGLLDE+QNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHHARVL
Sbjct: 71  RIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVL 130

Query: 128 IRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD 187
           IRQRHIRVGRQ+VNIPSFMVRV+SQKH+DFSLTSPFGGGRPGRVKR+N++A AKKA+GGD
Sbjct: 131 IRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNERAGAKKASGGD 190

Query: 188 GDEEDED 195
           GDE+DE+
Sbjct: 191 GDEDDEE 197

[Close]

BLAST of MS002788 vs. TAIR 10
Match: AT5G15200.1 (Ribosomal protein S4 )

HSP 1 Score: 324.3 bits (830), Expect = 6.6e-89
Identity = 165/188 (87.77%), Postives = 181/188 (96.28%), Query Frame = 0


Query: 8   GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR 67
           GKTFK PRRPYEKERLD+ELKLVGEYGLR KRELWRVQY+LSRIRN AR LLTLDEK+PR
Sbjct: 11  GKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSPR 70

Query: 68  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 127
           RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHH+RVL
Sbjct: 71  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVL 130

Query: 128 IRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGG- 187
           IRQRHIRVG+Q+VNIPSFMVR+DSQKHIDF+LTSPFGGGRPGRVKR+N+K+A+KKA+GG 
Sbjct: 131 IRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRNEKSASKKASGGG 190

Query: 188 --DGDEED 193
             DGD+E+
Sbjct: 191 DADGDDEE 198

[Close]

BLAST of MS002788 vs. TAIR 10
Match: AT5G15200.2 (Ribosomal protein S4 )

HSP 1 Score: 232.6 bits (592), Expect = 2.6e-61
Identity = 118/127 (92.91%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 8   GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR 67
           GKTFK PRRPYEKERLD+ELKLVGEYGLR KRELWRVQY+LSRIRN AR LLTLDEK+PR
Sbjct: 11  GKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSPR 70

Query: 68  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 127
           RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHH+RVL
Sbjct: 71  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVL 130

Query: 128 IRQRHIR 135
           IRQRHIR
Sbjct: 131 IRQRHIR 137

[Close]

BLAST of MS002788 vs. TAIR 10
Match: AT5G15750.1 (Alpha-L RNA-binding motif/Ribosomal protein S4 family protein )

HSP 1 Score: 43.1 bits (100), Expect = 2.9e-04
Identity = 33/144 (22.92%), Postives = 66/144 (45.83%), Query Frame = 0


Query: 5   YIDGKTFKKPR-RPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE 64
           Y + K  KK     +++E    E ++   Y +  + +  +       ++    ++  +D 
Sbjct: 6   YHEKKLIKKVNFLEWKREGNHRENEITYRYHMGSRDDYKKYSGLCRMVQKLTNIMKQMDP 65

Query: 65  KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH 124
            +P RI   + LL ++   G++  ++  L     L+V +F  RRL T++     A+    
Sbjct: 66  ADPFRIQMTDMLLEKLYNMGVI-PTRKSLTLTERLSVSSFCRRRLSTVLVHLKFAEHHKE 125

Query: 125 ARVLIRQRHIRVGRQVVNIPSFMV 148
           A   I Q H+RVG + +  P+F+V
Sbjct: 126 AVTYIEQGHVRVGPETITDPAFLV 148

The following BLAST results are available for this feature:

BLAST of MS002788 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025173.1	3.9e-99	98.43	40S ribosomal protein S9-2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
PON57336.1	7.3e-98	97.91	Ribosomal protein [Parasponia andersonii] >PON93633.1 Ribosomal protein [Trema o...	[more]
EXB49964.1	1.2e-97	99.47	40S ribosomal protein S9-2 [Morus notabilis]	[more]
XP_022142910.1	2.8e-97	100.00	40S ribosomal protein S9-2 [Momordica charantia] >XP_022151237.1 40S ribosomal p...	[more]
XP_004135180.1	6.1e-97	99.47	40S ribosomal protein S9-2 [Cucumis sativus] >XP_004141548.1 40S ribosomal prote...	[more]

BLAST of MS002788 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FLF0	8.6e-94	91.98	40S ribosomal protein S9-2 OS=Arabidopsis thaliana OX=3702 GN=RPS9C PE=1 SV=1	[more]
Q9LXG1	9.2e-88	87.77	40S ribosomal protein S9-1 OS=Arabidopsis thaliana OX=3702 GN=RPS9B PE=1 SV=1	[more]
P52810	6.7e-70	74.33	40S ribosomal protein S9 OS=Podospora anserina OX=2587412 GN=RPS9 PE=3 SV=1	[more]
A6QLG5	1.9e-69	72.28	40S ribosomal protein S9 OS=Bos taurus OX=9913 GN=RPS9 PE=2 SV=1	[more]
P46781	1.9e-69	72.28	40S ribosomal protein S9 OS=Homo sapiens OX=9606 GN=RPS9 PE=1 SV=3	[more]

BLAST of MS002788 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5C8D5	3.5e-98	97.91	Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_174530 PE=3 SV=...	[more]
A0A2P5F757	3.5e-98	97.91	Ribosomal protein OS=Trema orientale OX=63057 GN=TorRG33x02_106170 PE=3 SV=1	[more]
W9QQ56	6.0e-98	99.47	40S ribosomal protein S9-2 OS=Morus notabilis OX=981085 GN=L484_005300 PE=3 SV=1	[more]
A0A6J1DCX8	1.3e-97	100.00	40S ribosomal protein S9-2 OS=Momordica charantia OX=3673 GN=LOC111019211 PE=3 S...	[more]
A0A6J1JAT4	3.0e-97	99.47	40S ribosomal protein S9-2-like OS=Cucurbita maxima OX=3661 GN=LOC111485110 PE=3...	[more]

BLAST of MS002788 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G39850.1	6.1e-95	91.98	Ribosomal protein S4	[more]
AT5G15200.1	6.6e-89	87.77	Ribosomal protein S4	[more]
AT5G15200.2	2.6e-61	92.91	Ribosomal protein S4	[more]
AT5G15750.1	2.9e-04	22.92	Alpha-L RNA-binding motif/Ribosomal protein S4 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 106..177 e-value: 2.5E-5 score: 33.7
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 106..149 e-value: 3.0E-13 score: 49.3
IPR002942	RNA-binding S4 domain	CDD	cd00165	S4	coord: 106..150 e-value: 7.39572E-9 score: 48.3998
IPR001912	Ribosomal protein S4/S9, N-terminal	SMART	SM01390	Ribosomal_S4_2	coord: 4..105 e-value: 6.4E-23 score: 92.1
IPR001912	Ribosomal protein S4/S9, N-terminal	PFAM	PF00163	Ribosomal_S4	coord: 12..61 e-value: 1.4E-6 score: 29.1
IPR036986	RNA-binding S4 domain superfamily	GENE3D	3.10.290.10		coord: 105..163 e-value: 1.6E-14 score: 55.9
IPR005710	Ribosomal protein S4/S9, eukaryotic/archaeal	TIGRFAM	TIGR01018	TIGR01018	coord: 9..163 e-value: 1.8E-64 score: 214.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..194
None	No IPR available	PANTHER	PTHR11831:SF34	40S RIBOSOMAL PROTEIN S9-2-LIKE	coord: 7..194
None	No IPR available	PROSITE	PS50889	S4	coord: 106..177 score: 10.99744
None	No IPR available	SUPERFAMILY	55174	Alpha-L RNA-binding motif	coord: 9..156
IPR022801	Ribosomal protein S4/S9	PANTHER	PTHR11831	30S 40S RIBOSOMAL PROTEIN	coord: 7..194
IPR018079	Ribosomal protein S4, conserved site	PROSITE	PS00632	RIBOSOMAL_S4	coord: 104..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002788.1	MS002788.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome