MS028021 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGTGACCAACGGTGGACATCAATCCGTGCCAAGATACTTGCGAATTTGATAATTGAACGAGTGCTGAGAGGAAGGAAAGAATTGGAATGGAAGCTTATATGTGATGAGTTCTGCAGGAAAACAAGTATGACATGGGATGTAGAACAACTGAAGAACCAATATGCTGTTATGAGAAAGCAGTACCTAATTGTGCAGTCGATGTTTCATCGGGACGACTTCTCGTGGCGTGGAAATACCGGGATTATTGTGGCCACAGATGATAGGTGGGCCAAAATTGCTAGGGTATGTTCTTTTATGATCTCTAAAACTCAGATAATTGTGATAGCTCTACAACAGAGACTATAACTCTTTATTATTATGATGGCTTATTTGTCCAAAAAGCAGGTAACGATGAATTGTCCAACATATGAAGAGTTATGCATAATGTTCTCCAATTTTGATGGTAAGTTGGTCACTGATCGACTTTGATTTCAAACTCAAGCATTCCTGCCTACTAAACCTAATGGGAGTGATCATTTACAGATGGTCAAGAAATTACGAGTCAACCTACCAAACCCAATTCATCAAATAGTCACAAAAGAGGGAGGAAGTCAGACGAAGATGCAACATATAAAATAGCAGATTGTATTAAAGGATTGGATGAAATTGATGAAATGCATGGACTTGAAGAAGGTGTTTATTTTGGAGCTTTGGTACTGTTCAATGAACCAAATGCCAGAGAGACCTTCCTTTGTCTCAAGGAAGATAAACGCTATAACTGGCTGCAGAGGAACTGTTGA ATGAGTGACCAACGGTGGACATCAATCCGTGCCAAGATACTTGCGAATTTGATAATTGAACGAGTGCTGAGAGGAAGGAAAGAATTGGAATGGAAGCTTATATGTGATGAGTTCTGCAGGAAAACAAGTATGACATGGGATGTAGAACAACTGAAGAACCAATATGCTGTTATGAGAAAGCAGTACCTAATTGTGCAGTCGATGTTTCATCGGGACGACTTCTCGTGGCGTGGAAATACCGGGATTATTGTGGCCACAGATGATAGGTGGGCCAAAATTGCTAGGGTAACGATGAATTGTCCAACATATGAAGAGTTATGCATAATGTTCTCCAATTTTGATGATGGTCAAGAAATTACGAGTCAACCTACCAAACCCAATTCATCAAATAGTCACAAAAGAGGGAGGAAGTCAGACGAAGATGCAACATATAAAATAGCAGATTGTATTAAAGGATTGGATGAAATTGATGAAATGCATGGACTTGAAGAAGGTGTTTATTTTGGAGCTTTGGTACTGTTCAATGAACCAAATGCCAGAGAGACCTTCCTTTGTCTCAAGGAAGATAAACGCTATAACTGGCTGCAGAGGAACTGTTGA ATGAGTGACCAACGGTGGACATCAATCCGTGCCAAGATACTTGCGAATTTGATAATTGAACGAGTGCTGAGAGGAAGGAAAGAATTGGAATGGAAGCTTATATGTGATGAGTTCTGCAGGAAAACAAGTATGACATGGGATGTAGAACAACTGAAGAACCAATATGCTGTTATGAGAAAGCAGTACCTAATTGTGCAGTCGATGTTTCATCGGGACGACTTCTCGTGGCGTGGAAATACCGGGATTATTGTGGCCACAGATGATAGGTGGGCCAAAATTGCTAGGGTAACGATGAATTGTCCAACATATGAAGAGTTATGCATAATGTTCTCCAATTTTGATGATGGTCAAGAAATTACGAGTCAACCTACCAAACCCAATTCATCAAATAGTCACAAAAGAGGGAGGAAGTCAGACGAAGATGCAACATATAAAATAGCAGATTGTATTAAAGGATTGGATGAAATTGATGAAATGCATGGACTTGAAGAAGGTGTTTATTTTGGAGCTTTGGTACTGTTCAATGAACCAAATGCCAGAGAGACCTTCCTTTGTCTCAAGGAAGATAAACGCTATAACTGGCTGCAGAGGAACTGTTGA MSDQRWTSIRAKILANLIIERVLRGRKELEWKLICDEFCRKTSMTWDVEQLKNQYAVMRKQYLIVQSMFHRDDFSWRGNTGIIVATDDRWAKIARVTMNCPTYEELCIMFSNFDDGQEITSQPTKPNSSNSHKRGRKSDEDATYKIADCIKGLDEIDEMHGLEEGVYFGALVLFNEPNARETFLCLKEDKRYNWLQRNC Homology
BLAST of MS028021 vs. NCBI nr
Match: XP_022145264.1 (uncharacterized protein LOC111014759 isoform X1 [Momordica charantia]) HSP 1 Score: 258.8 bits (660), Expect = 3.7e-65 Identity = 140/215 (65.12%), Postives = 157/215 (73.02%), Query Frame = 0
BLAST of MS028021 vs. NCBI nr
Match: XP_022145265.1 (uncharacterized protein LOC111014759 isoform X2 [Momordica charantia]) HSP 1 Score: 243.0 bits (619), Expect = 2.1e-60 Identity = 132/204 (64.71%), Postives = 149/204 (73.04%), Query Frame = 0
BLAST of MS028021 vs. NCBI nr
Match: EOX90801.1 (Radiation sensitive 17, putative [Theobroma cacao]) HSP 1 Score: 174.1 bits (440), Expect = 1.2e-39 Identity = 103/279 (36.92%), Postives = 139/279 (49.82%), Query Frame = 0
BLAST of MS028021 vs. NCBI nr
Match: XP_017977880.1 (PREDICTED: L10-interacting MYB domain-containing protein-like [Theobroma cacao]) HSP 1 Score: 172.2 bits (435), Expect = 4.6e-39 Identity = 102/279 (36.56%), Postives = 139/279 (49.82%), Query Frame = 0
BLAST of MS028021 vs. NCBI nr
Match: KAF3974668.1 (hypothetical protein CMV_002013 [Castanea mollissima]) HSP 1 Score: 162.9 bits (411), Expect = 2.8e-36 Identity = 100/273 (36.63%), Postives = 136/273 (49.82%), Query Frame = 0
BLAST of MS028021 vs. ExPASy TrEMBL
Match: A0A6J1CUQ3 (uncharacterized protein LOC111014759 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014759 PE=4 SV=1) HSP 1 Score: 258.8 bits (660), Expect = 1.8e-65 Identity = 140/215 (65.12%), Postives = 157/215 (73.02%), Query Frame = 0
BLAST of MS028021 vs. ExPASy TrEMBL
Match: A0A6J1CTZ5 (uncharacterized protein LOC111014759 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111014759 PE=4 SV=1) HSP 1 Score: 243.0 bits (619), Expect = 1.0e-60 Identity = 132/204 (64.71%), Postives = 149/204 (73.04%), Query Frame = 0
BLAST of MS028021 vs. ExPASy TrEMBL
Match: A0A061DGI7 (Radiation sensitive 17, putative OS=Theobroma cacao OX=3641 GN=TCM_000169 PE=3 SV=1) HSP 1 Score: 174.1 bits (440), Expect = 5.9e-40 Identity = 103/279 (36.92%), Postives = 139/279 (49.82%), Query Frame = 0
BLAST of MS028021 vs. ExPASy TrEMBL
Match: A0A6P5YIE1 (L10-interacting MYB domain-containing protein-like OS=Durio zibethinus OX=66656 GN=LOC111292246 PE=4 SV=1) HSP 1 Score: 162.9 bits (411), Expect = 1.3e-36 Identity = 99/278 (35.61%), Postives = 135/278 (48.56%), Query Frame = 0
BLAST of MS028021 vs. ExPASy TrEMBL
Match: A0A2N9J0Q6 (Myb_DNA-bind_3 domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59019 PE=4 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 2.3e-36 Identity = 103/277 (37.18%), Postives = 138/277 (49.82%), Query Frame = 0
BLAST of MS028021 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). ) HSP 1 Score: 52.0 bits (123), Expect = 6.5e-07 Identity = 52/250 (20.80%), Postives = 97/250 (38.80%), Query Frame = 0
BLAST of MS028021 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). ) HSP 1 Score: 52.0 bits (123), Expect = 6.5e-07 Identity = 52/250 (20.80%), Postives = 97/250 (38.80%), Query Frame = 0
BLAST of MS028021 vs. TAIR 10
Match: AT5G05800.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 42.4 bits (98), Expect = 5.1e-04 Identity = 24/92 (26.09%), Postives = 41/92 (44.57%), Query Frame = 0
BLAST of MS028021 vs. TAIR 10
Match: AT5G05800.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 881 Blast hits to 512 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 38; Plants - 833; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). ) HSP 1 Score: 42.4 bits (98), Expect = 5.1e-04 Identity = 24/92 (26.09%), Postives = 41/92 (44.57%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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