Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGTTCATCTTCCTCCAAGCCGCACGACAAAGAGAAGGAAAAGAAGGGAGTGTTGTTGCCTCCACCAACTAAACCGGGTATGATTCCTCTTGAACCTCCTAGGATTTCTCATGAAAAATTAGTATTTGATCCTAGGGAACAAAGAAGAAAATATAAGGAAGCTATAAGAATGAACCCTAGGAGAAATTTATCCATAGGTAATACAAATTTTGAAAAAATCAATATGGAATCTCATGATGCTAGGGTTAATAAAGAAGGTTCTAGTGAGAAGAAATTAGGAGGTGTTAGTAAAGTCTATCTTCGAAAAAATCAGTCTTTAGAGGAAAAAGGTGTTGTTTTAGACGAAGAAATAGCTAGACTTCAAGAGAGAGCGGAGATGTTCAGGAAAAATAACGAAATTAGGGATAAAGAGAATGAGAAGGTCTATGCGAAAATTGAGGAACTAAACATAAAATGGCAAGAATTCATGGAAAACTCAAAGAAAGTGAGTGAGGAGATTCAACATAAAATGAGTGCCATTTGA mRNA sequence
ATGGAAGGTTCATCTTCCTCCAAGCCGCACGACAAAGAGAAGGAAAAGAAGGGAGTGTTGTTGCCTCCACCAACTAAACCGGGTATGATTCCTCTTGAACCTCCTAGGATTTCTCATGAAAAATTAGTATTTGATCCTAGGGAACAAAGAAGAAAATATAAGGAAGCTATAAGAATGAACCCTAGGAGAAATTTATCCATAGGTAATACAAATTTTGAAAAAATCAATATGGAATCTCATGATGCTAGGGTTAATAAAGAAGGTTCTAGTGAGAAGAAATTAGGAGGTGTTAGTAAAGTCTATCTTCGAAAAAATCAGTCTTTAGAGGAAAAAGGTGTTGTTTTAGACGAAGAAATAGCTAGACTTCAAGAGAGAGCGGAGATGTTCAGGAAAAATAACGAAATTAGGGATAAAGAGAATGAGAAGGTCTATGCGAAAATTGAGGAACTAAACATAAAATGGCAAGAATTCATGGAAAACTCAAAGAAAGTGAGTGAGGAGATTCAACATAAAATGAGTGCCATTTGA Coding sequence (CDS)
ATGGAAGGTTCATCTTCCTCCAAGCCGCACGACAAAGAGAAGGAAAAGAAGGGAGTGTTGTTGCCTCCACCAACTAAACCGGGTATGATTCCTCTTGAACCTCCTAGGATTTCTCATGAAAAATTAGTATTTGATCCTAGGGAACAAAGAAGAAAATATAAGGAAGCTATAAGAATGAACCCTAGGAGAAATTTATCCATAGGTAATACAAATTTTGAAAAAATCAATATGGAATCTCATGATGCTAGGGTTAATAAAGAAGGTTCTAGTGAGAAGAAATTAGGAGGTGTTAGTAAAGTCTATCTTCGAAAAAATCAGTCTTTAGAGGAAAAAGGTGTTGTTTTAGACGAAGAAATAGCTAGACTTCAAGAGAGAGCGGAGATGTTCAGGAAAAATAACGAAATTAGGGATAAAGAGAATGAGAAGGTCTATGCGAAAATTGAGGAACTAAACATAAAATGGCAAGAATTCATGGAAAACTCAAAGAAAGTGAGTGAGGAGATTCAACATAAAATGAGTGCCATTTGA Protein sequence
MEGSSSSKPHDKEKEKKGVLLPPPTKPGMIPLEPPRISHEKLVFDPREQRRKYKEAIRMNPRRNLSIGNTNFEKINMESHDARVNKEGSSEKKLGGVSKVYLRKNQSLEEKGVVLDEEIARLQERAEMFRKNNEIRDKENEKVYAKIEELNIKWQEFMENSKKVSEEIQHKMSAI
Homology
BLAST of MC05g_new0218 vs. NCBI nr
Match:
XP_022158483.1 (uncharacterized protein LOC111024964 [Momordica charantia])
HSP 1 Score: 110 bits (274), Expect = 5.25e-25
Identity = 79/169 (46.75%), Postives = 92/169 (54.44%), Query Frame = 0
Query: 1 MEGSSSSKPHDKEKEKKGVLLPPPTKPGMIPLEPPRISHEKLVFDPREQRRKYKEAIRMN 60 MEGSS SKP DKE EKK V+LPPP IP EP Sbjct: 53 MEGSSFSKPCDKENEKKKVILPPP-----IPPEP-------------------------- 112 Query: 61 PRRNLSIGNTNFEKINMESHDARVNKEGSSEKKLGGVSKVYLRKNQSLEEKGVVLDEEIA 120 H ARVN+ G SEKKL G SKVYLRKNQS+ +K LDE IA Sbjct: 113 -------------------HVARVNEGGYSEKKLEGFSKVYLRKNQSVGDKDSDLDERIA 171 Query: 121 RLQERAEMFRKNNEIRDKENEKVYAKIEELNIKWQEFMENSKKVSEEIQ 169 R+ E+ ++ K EI DK+NE + AKI ELN KWQ FMENS+++SEEIQ Sbjct: 173 RINEKVDIENKEREIWDKKNEVICAKIAELNKKWQRFMENSRRMSEEIQ 171
BLAST of MC05g_new0218 vs. NCBI nr
Match:
XP_022141932.1 (uncharacterized protein LOC111012188 [Momordica charantia])
HSP 1 Score: 91.7 bits (226), Expect = 3.08e-19
Identity = 53/95 (55.79%), Postives = 66/95 (69.47%), Query Frame = 0
Query: 75 INMESHDARVNKEGSSEKKLGGVSKVYLRKNQSLEEKGVVLDEEIARLQERAEMFRKNNE 134 + +E H AR+N+ +EKKL SKVYLRKNQ + + G LDE I + ER + K E Sbjct: 1 MTLEPHIARINEGDHTEKKLEEFSKVYLRKNQPMGDTGSDLDERIGMINERVDTKNKKME 60 Query: 135 IRDKENEKVYAKIEELNIKWQEFMENSKKVSEEIQ 169 IRDKENE + AKI ELN KWQ FMENS+++SEEIQ Sbjct: 61 IRDKENEVICAKIAELNEKWQRFMENSRRMSEEIQ 95
BLAST of MC05g_new0218 vs. ExPASy TrEMBL
Match:
A0A6J1DW79 (uncharacterized protein LOC111024964 OS=Momordica charantia OX=3673 GN=LOC111024964 PE=4 SV=1)
HSP 1 Score: 110 bits (274), Expect = 2.54e-25
Identity = 79/169 (46.75%), Postives = 92/169 (54.44%), Query Frame = 0
Query: 1 MEGSSSSKPHDKEKEKKGVLLPPPTKPGMIPLEPPRISHEKLVFDPREQRRKYKEAIRMN 60 MEGSS SKP DKE EKK V+LPPP IP EP Sbjct: 53 MEGSSFSKPCDKENEKKKVILPPP-----IPPEP-------------------------- 112 Query: 61 PRRNLSIGNTNFEKINMESHDARVNKEGSSEKKLGGVSKVYLRKNQSLEEKGVVLDEEIA 120 H ARVN+ G SEKKL G SKVYLRKNQS+ +K LDE IA Sbjct: 113 -------------------HVARVNEGGYSEKKLEGFSKVYLRKNQSVGDKDSDLDERIA 171 Query: 121 RLQERAEMFRKNNEIRDKENEKVYAKIEELNIKWQEFMENSKKVSEEIQ 169 R+ E+ ++ K EI DK+NE + AKI ELN KWQ FMENS+++SEEIQ Sbjct: 173 RINEKVDIENKEREIWDKKNEVICAKIAELNKKWQRFMENSRRMSEEIQ 171
BLAST of MC05g_new0218 vs. ExPASy TrEMBL
Match:
A0A6J1CL76 (uncharacterized protein LOC111012188 OS=Momordica charantia OX=3673 GN=LOC111012188 PE=4 SV=1)
HSP 1 Score: 91.7 bits (226), Expect = 1.49e-19
Identity = 53/95 (55.79%), Postives = 66/95 (69.47%), Query Frame = 0
Query: 75 INMESHDARVNKEGSSEKKLGGVSKVYLRKNQSLEEKGVVLDEEIARLQERAEMFRKNNE 134 + +E H AR+N+ +EKKL SKVYLRKNQ + + G LDE I + ER + K E Sbjct: 1 MTLEPHIARINEGDHTEKKLEEFSKVYLRKNQPMGDTGSDLDERIGMINERVDTKNKKME 60 Query: 135 IRDKENEKVYAKIEELNIKWQEFMENSKKVSEEIQ 169 IRDKENE + AKI ELN KWQ FMENS+++SEEIQ Sbjct: 61 IRDKENEVICAKIAELNEKWQRFMENSRRMSEEIQ 95
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
XP_022158483.1 5.25e-25 46.75 uncharacterized protein LOC111024964 [Momordica charantia] [more]
XP_022141932.1 3.08e-19 55.79 uncharacterized protein LOC111012188 [Momordica charantia] [more]
Match Name E-value Identity Description
A0A6J1DW79 2.54e-25 46.75 uncharacterized protein LOC111024964 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1CL76 1.49e-19 55.79 uncharacterized protein LOC111012188 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
A T G G A A G G T T C A T C T T C C T C C A A G C C G C A C G A C A A A G A G A A G G A A A A G A A G G G A G T G T T G T T G C C T C C A C C A A C T A A A C C G G G T A T G A T T C C T C T T G A A C C T C C T A G G A T T T C T C A T G A A A A A T T A G T A T T T G A T C C T A G G G A A C A A A G A A G A A A A T A T A A G G A A G C T A T A A G A A T G A A C C C T A G G A G A A A T T T A T C C A T A G G T A A T A C A A A T T T T G A A A A A A T C A A T A T G G A A T C T C A T G A T G C T A G G G T T A A T A A A G A A G G T T C T A G T G A G A A G A A A T T A G G A G G T G T T A G T A A A G T C T A T C T T C G A A A A A A T C A G T C T T T A G A G G A A A A A G G T G T T G T T T T A G A C G A A G A A A T A G C T A G A C T T C A A G A G A G A G C G G A G A T G T T C A G G A A A A A T A A C G A A A T T A G G G A T A A A G A G A A T G A G A A G G T C T A T G C G A A A A T T G A G G A A C T A A A C A T A A A A T G G C A A G A A T T C A T G G A A A A C T C A A A G A A A G T G A G T G A G G A G A T T C A A C A T A A A A T G A G T G C C A T T T G A 50 100 150 200 250 300 350 400 450 500 Score = Score = Score = Sequence Coil mobidb-lite mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available COILS Coil Coil coord: 105..125
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..20
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..48
Relationships
The following mRNA feature(s) are a part of this gene: