MC08g_new0358 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC08g_new0358
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC08: 18762473 .. 18762892 (-)
RNA-Seq ExpressionMC08g_new0358
SyntenyMC08g_new0358
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGATCCTAGCTCTCGTCATGGTTCCCATGTAGATATCAATGACTTTGATATGCATTTTGACATTCAGAATGACATATTTAATCCATTTGATGATGAAGGGACATCATTTTCACAACCTCAACCGCAACCCAATTTCACTGATAAAAGTTCAAGTGGAGGTCATAAAAGGAAAGCATGCAACAAGGATGGAATGAGTTATCATATCGAACGCATGGCAAATTCGGTGACAGAAGTGGCACTAAAGCTTGATGGGCTTATAGAAGTCCTTTTAAATGATAGAGAAGTGACTAACATACAAGATCGACTAACTGATGAGTTAAAACAAATAGACGGAGAAGAAAGAGTTGCTAAGAAATTTTTTCACCATGAAAGAAGAGAAGAAGAAAGAGTATGTTCTAAACTTATTAGAACATGA

mRNA sequence

ATGGGGGATCCTAGCTCTCGTCATGGTTCCCATGTAGATATCAATGACTTTGATATGCATTTTGACATTCAGAATGACATATTTAATCCATTTGATGATGAAGGGACATCATTTTCACAACCTCAACCGCAACCCAATTTCACTGATAAAAGTTCAAGTGGAGGTCATAAAAGGAAAGCATGCAACAAGGATGGAATGAGTTATCATATCGAACGCATGGCAAATTCGGTGACAGAAGTGGCACTAAAGCTTGATGGGCTTATAGAAGTCCTTTTAAATGATAGAGAAGTGACTAACATACAAGATCGACTAACTGATGAGTTAAAACAAATAGACGGAGAAGAAAGAGTTGCTAAGAAATTTTTTCACCATGAAAGAAGAGAAGAAGAAAGAGTATGTTCTAAACTTATTAGAACATGA

Coding sequence (CDS)

ATGGGGGATCCTAGCTCTCGTCATGGTTCCCATGTAGATATCAATGACTTTGATATGCATTTTGACATTCAGAATGACATATTTAATCCATTTGATGATGAAGGGACATCATTTTCACAACCTCAACCGCAACCCAATTTCACTGATAAAAGTTCAAGTGGAGGTCATAAAAGGAAAGCATGCAACAAGGATGGAATGAGTTATCATATCGAACGCATGGCAAATTCGGTGACAGAAGTGGCACTAAAGCTTGATGGGCTTATAGAAGTCCTTTTAAATGATAGAGAAGTGACTAACATACAAGATCGACTAACTGATGAGTTAAAACAAATAGACGGAGAAGAAAGAGTTGCTAAGAAATTTTTTCACCATGAAAGAAGAGAAGAAGAAAGAGTATGTTCTAAACTTATTAGAACATGA

Protein sequence

MGDPSSRHGSHVDINDFDMHFDIQNDIFNPFDDEGTSFSQPQPQPNFTDKSSSGGHKRKACNKDGMSYHIERMANSVTEVALKLDGLIEVLLNDREVTNIQDRLTDELKQIDGEERVAKKFFHHERREEERVCSKLIRT
Homology
BLAST of MC08g_new0358 vs. NCBI nr
Match: XP_011464620.1 (PREDICTED: uncharacterized protein LOC105351564 [Fragaria vesca subsp. vesca])

HSP 1 Score: 57.8 bits (138), Expect = 1.18e-06
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 0

Query: 31  FDDEGTSFSQPQ-PQPNFTDKSSSGGHKRKACNKDGMSYHIERMANSVTEVALKLDGLIE 90
           F+D   SF+QP  PQ   T  +SS   +RK    D MS +   MA +V  +A K+DGL+ 
Sbjct: 194 FEDVDASFTQPSAPQQMPTQSASSNTSRRKGKALDEMSKNFGLMAKAVAGMAPKIDGLVN 253

Query: 91  VLLNDREVTNIQDRLTDELKQIDG 113
           VL  D+E+T++Q RL  EL +++ 
Sbjct: 254 VLSTDKELTDLQSRLDGELSKMES 277

BLAST of MC08g_new0358 vs. NCBI nr
Match: BBN70239.1 (hypothetical protein Prudu_1449S000300 [Prunus dulcis])

HSP 1 Score: 49.7 bits (117), Expect = 8.17e-04
Identity = 27/82 (32.93%), Postives = 50/82 (60.98%), Query Frame = 0

Query: 32  DDEGTSFSQPQPQPNFTDKSSSGGHKRKACNK-DGMSYHIERMANSVTEVALKLDGLIEV 91
           +D+ T+F+QP PQP+   + S   H R+  N  + MS     +A +V  +A +L GL+ V
Sbjct: 203 EDDETTFTQPNPQPSSAQQPSGPNHPRRKVNALNEMSNKFGLVAKAVAGMAPQLAGLVNV 262

Query: 92  LLNDREVTNIQDRLTDELKQID 112
           L  ++++ ++Q +L  EL++I+
Sbjct: 263 LSTEKDLADMQAKLGGELRKIE 284

BLAST of MC08g_new0358 vs. ExPASy TrEMBL
Match: A0A5H2XUX8 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_1449S000300 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.96e-04
Identity = 27/82 (32.93%), Postives = 50/82 (60.98%), Query Frame = 0

Query: 32  DDEGTSFSQPQPQPNFTDKSSSGGHKRKACNK-DGMSYHIERMANSVTEVALKLDGLIEV 91
           +D+ T+F+QP PQP+   + S   H R+  N  + MS     +A +V  +A +L GL+ V
Sbjct: 203 EDDETTFTQPNPQPSSAQQPSGPNHPRRKVNALNEMSNKFGLVAKAVAGMAPQLAGLVNV 262

Query: 92  LLNDREVTNIQDRLTDELKQID 112
           L  ++++ ++Q +L  EL++I+
Sbjct: 263 LSTEKDLADMQAKLGGELRKIE 284

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_011464620.11.18e-0640.48PREDICTED: uncharacterized protein LOC105351564 [Fragaria vesca subsp. vesca][more]
BBN70239.18.17e-0432.93hypothetical protein Prudu_1449S000300 [Prunus dulcis][more]
Match NameE-valueIdentityDescription
A0A5H2XUX83.96e-0432.93Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_1449S000300 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..51

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC08g_new0358.1MC08g_new0358.1mRNA