Tan0001295 (gene) Snake gourd v1

Overview


Name	Tan0001295
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	protein arv1 homolog
Location	LG10: 392112 .. 394501 (+)
RNA-Seq Expression	Tan0001295
Synteny	Tan0001295

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTGGGTCGAGAAAAGAGAGCGACAGATGGCAATTGGGCAAAAAACCCTTATGAAGTATGAACTTGATTCAAAATACTAAGACCTAAATTTGGGTCAACTTCTTCGATTGCGTCGCTGGATCACTCACTCGGATTTCGTCAATGGGAAGGGAGACAAACGGGAATCGTTGTGTGCAGTGTGGATTTAGAACGAATCAACTGTTCGTTCTGTACTCACCCGGGAACATGCATCTTATGAAATGCGTACGCTTGCTTTATCAAGATTTCTCTCTCACCTGTCCATTTATGCGCTCTTTAAGTCCTTGTTTTCTTTTATTTTATGTAAAATCCTTATGCTTCTTAATGTTAAAAGGACAACTGCAAATCCGTTGCGGACGATTACATTGAATGCGAAGTGATGGTGAATTGCTCACTCCTTTATCACTGTTGTTGTATTCTTTTATGCTTTCTTTTCCATCCATTTGTTTATGCAATTACTTTATCTGAGGAAGTTACTTTTTCAAGTGGTAGATTCTTCTAATCGATTTGATACTGCACAAGTGCCAAGCTTACAGACATTTGCTCTACAACCTACTTGATAGAGATCGCTTGTCTTGTCAGGTACACACCCAATTACTTCATTTCACAGACGCGCGGAAGAAAATAAAATGAAAAAGATATATGAGTTACTAATCTTATTGACAATTGGTTTTGAGATGTAACTATATAATCTAATATATTTATTAGCTTTGACCTCCTATGCATGCGTCCCTAATACTGTATTTAAGGATTTTTTTTTTTTTTAAATCTTGTTTGTAATCTCTTAGTTCGATTATTATTTTTCTAATTGTTATTGTTATTTAAAAGGCTTTTCTTCCTTTTGGTTTTTTCCTCGTGCTATATTTCTTCCCTGCTGAATCCGTAGTCTCCCGGATGCAAACCGAACTTCATTTTCTGTGTGGTAGTCGTAGTCCTAACATCACCGGGGCATTATTCGAGTTGATAAACGATTGATTAATAATTAAGCCCTTATGAGTTGTTTTTCCTAACCGTCGTTTCAGATACTAATTCGACCATTTCCTTCACTCTTTTGTAGGATTTGATGTGGAAGTTTGGTCTAAGTTTTCTTCTTTTGGATGCTTGTATCCAATTCCGTTGGGAAGTCTCCCCTAGGGGTGTCTTGTCCTTCTCGTACTTTACTATTGACATCATACTTTTTTCTTTTGACACATATAATCTCTAGATTGTGTACCTTAGCAACAACCAATTAGACAGGTACATAATTCTGAGACTAAGTGAGAAACAATCATCCATGAGCTTTTCATCAACAATTGGTATTTGTCAAAAGGTTTGCAATCGCTTATGTAACCCTTTTTTTCGTTGCTTTAGATGTTTCATGATGATCATGTACATTTATGGAAGTTGTCGTAAAGATCTTTGTAGACTTTCATGGATGTGTCTCTCGGAAATATTGTGTTTCTTTGTGCTCTCCATATTTTGTCGAGGGTATTTCTGAAGAGCTCAGCTGCGGTCCATAGGTAAGTTGTAAAACATTTTTAAGACTGTTGCTTTAATTTTTGAGATACACCCAGATTGTTTTCTTCAGTTGCAACCCGCAATGGAATATGCATCCATTTGCGTGTAGGACGTCTGACTTCGATTCCTATTTGTTTGTTTCTCATTGCTTGTGCAGGTACAGGTACAAAGACTTGTTCTTTGCCATCATTATTTCAAGTTACTTCAAGATCTTTCTTGTTAGCATGATGGTATATTTACGATCATCATAGTTATTTATTTATTTATTTTATCGTAGACGTTGCAGCCTAATTATCTAAAATGTGTTGAATGAATACTTGTGTATCTTTCTGATATTCAGCGTGTCTTACTGCAGATCTGGGAATTTCCATCCACAGTGATCTTCATCATAGATTTATTTGTTCTATCGTCCAATGCAGTAGCAATTAAAGGTGAGGAAAGCCTTAAATTGTCAGCAGATGACTCTGGCTTCTTGGACGATTATTGTATAGATTAGGGATTTCACCAGATTCATGATTAAAAGCTTTTTTGTGAAGCAGTGATCACGGAGTCAGCTGTGAGTAGATGCATTGGAACTTGCTTGTGTGCTCATGGAGCTAAGTTTTTGGCCACAAAGCTTCTTGAGAAATGAAGTTTAAAGATGGACACTGGTACAACAGCCGACACCCTACTACATGAGGCCAGACCAGAATCCAATCATTAATTATGGAACTTCAAATTTAGAGGATGGCTGGAGCAGGGGATCTGGCTTGTGGTTTCTTATACAGCCGGACTGATGAAAGCTATTTTCGGAATTTGAATCGGTTATTTTAAATATTGTCCATCATTTTGGTAGTTGATGTGGTGGCTTTGAAAGGAGGTATATTTCTTGTATC

mRNA sequence

GCTGGGTCGAGAAAAGAGAGCGACAGATGGCAATTGGGCAAAAAACCCTTATGAAGTATGAACTTGATTCAAAATACTAAGACCTAAATTTGGGTCAACTTCTTCGATTGCGTCGCTGGATCACTCACTCGGATTTCGTCAATGGGAAGGGAGACAAACGGGAATCGTTGTGTGCAGTGTGGATTTAGAACGAATCAACTGTTCGTTCTGTACTCACCCGGGAACATGCATCTTATGAAATGCGACAACTGCAAATCCGTTGCGGACGATTACATTGAATGCGAAGTGATGATTCTTCTAATCGATTTGATACTGCACAAGTGCCAAGCTTACAGACATTTGCTCTACAACCTACTTGATAGAGATCGCTTGTCTTGTCAGGATTTGATGTGGAAGTTTGGTCTAAGTTTTCTTCTTTTGGATGCTTGTATCCAATTCCGTTGGGAAGTCTCCCCTAGGGGTGTCTTGTCCTTCTCGTACTTTACTATTGACATCATACTTTTTTCTTTTGACACATATAATCTCTAGATTGTGTACCTTAGCAACAACCAATTAGACAGGTACATAATTCTGAGACTAAGTGAGAAACAATCATCCATGAGCTTTTCATCAACAATTGGTATTTGTCAAAAGGTTTGCAATCGCTTATGTAACCCTTTTTTTCGTTGCTTTAGATGTTTCATGATGATCATGTACATTTATGGAAGTTGTCGTAAAGATCTTTGTAGACTTTCATGGATGTGTCTCTCGGAAATATTGTGTTTCTTTGTGCTCTCCATATTTTGTCGAGGGTATTTCTGAAGAGCTCAGCTGCGGTCCATAGGTAAGTTGTAAAACATTTTTAAGACTGTTGCTTTAATTTTTGAGATACACCCAGATTGTTTTCTTCAGTTGCAACCCGCAATGGAATATGCATCCATTTGCGTGTAGGACGTCTGACTTCGATTCCTATTTGTTTGTTTCTCATTGCTTGTGCAGGTACAGGTACAAAGACTTGTTCTTTGCCATCATTATTTCAAGTTACTTCAAGATCTTTCTTGTTAGCATGATGATCTGGGAATTTCCATCCACAGTGATCTTCATCATAGATTTATTTGTTCTATCGTCCAATGCAGTAGCAATTAAAGTGATCACGGAGTCAGCTGTGAGTAGATGCATTGGAACTTGCTTGTGTGCTCATGGAGCTAAGTTTTTGGCCACAAAGCTTCTTGAGAAATGAAGTTTAAAGATGGACACTGGTACAACAGCCGACACCCTACTACATGAGGCCAGACCAGAATCCAATCATTAATTATGGAACTTCAAATTTAGAGGATGGCTGGAGCAGGGGATCTGGCTTGTGGTTTCTTATACAGCCGGACTGATGAAAGCTATTTTCGGAATTTGAATCGGTTATTTTAAATATTGTCCATCATTTTGGTAGTTGATGTGGTGGCTTTGAAAGGAGGTATATTTCTTGTATC

Coding sequence (CDS)

ATGGGAAGGGAGACAAACGGGAATCGTTGTGTGCAGTGTGGATTTAGAACGAATCAACTGTTCGTTCTGTACTCACCCGGGAACATGCATCTTATGAAATGCGACAACTGCAAATCCGTTGCGGACGATTACATTGAATGCGAAGTGATGATTCTTCTAATCGATTTGATACTGCACAAGTGCCAAGCTTACAGACATTTGCTCTACAACCTACTTGATAGAGATCGCTTGTCTTGTCAGGATTTGATGTGGAAGTTTGGTCTAAGTTTTCTTCTTTTGGATGCTTGTATCCAATTCCGTTGGGAAGTCTCCCCTAGGGGTGTCTTGTCCTTCTCGTACTTTACTATTGACATCATACTTTTTTCTTTTGACACATATAATCTCTAG

Protein sequence

MGRETNGNRCVQCGFRTNQLFVLYSPGNMHLMKCDNCKSVADDYIECEVMILLIDLILHKCQAYRHLLYNLLDRDRLSCQDLMWKFGLSFLLLDACIQFRWEVSPRGVLSFSYFTIDIILFSFDTYNL

Homology

[Close]

BLAST of Tan0001295 vs. ExPASy Swiss-Prot
Match: Q5MK23 (Protein ARV 2 OS=Arabidopsis thaliana OX=3702 GN=ARV2 PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.3e-26
Identity = 49/85 (57.65%), Postives = 69/85 (81.18%), Query Frame = 0


Query: 10 CVQCGFRTNQLFVLYSPGNMHLMKCDNCKSVADDYIECEVMILLIDLILHKCQAYRHLLY 69
          CV+CG +   LF+ YSPGN  LMKC+NC+ VAD+Y+ECE++I+ IDLILHK +AYRHLLY
Sbjct: 8  CVECGHKVKSLFIQYSPGNFRLMKCENCEEVADEYVECELLIIFIDLILHKTKAYRHLLY 67

Query: 70 NLLDRDRLSCQDLMWKFGLSFLLLD 95
          N+++++  + Q L+WK  L++LLLD
Sbjct: 68 NVVNQESANVQHLLWKLVLAYLLLD 92

[Close]

BLAST of Tan0001295 vs. ExPASy Swiss-Prot
Match: Q5MK24 (Protein ARV 1 OS=Arabidopsis thaliana OX=3702 GN=ARV1 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.5e-25
Identity = 51/87 (58.62%), Postives = 66/87 (75.86%), Query Frame = 0


Query: 8  NRCVQCGFRTNQLFVLYSPGNMHLMKCDNCKSVADDYIECEVMILLIDLILHKCQAYRHL 67
          +RCV CGFR   LF+ YSPGN+ LMKC NCK VAD+YIECE MI+ IDLILH+ + YRH+
Sbjct: 6  HRCVGCGFRVKSLFIQYSPGNIRLMKCGNCKEVADEYIECERMIIFIDLILHRPKVYRHV 65

Query: 68 LYNLLDRDRLSCQDLMWKFGLSFLLLD 95
          LYN ++   ++ Q L+WK   ++LLLD
Sbjct: 66 LYNAINPATVNIQHLLWKLVFAYLLLD 92

[Close]

BLAST of Tan0001295 vs. ExPASy Swiss-Prot
Match: Q9HDX5 (Protein arv1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=arv1 PE=3 SV=3)

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-10
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 0


Query: 9  RCVQCGFRTNQLFVLYSPG--NMHLMKCDNCKSVADDYIECEVMILLIDLILHKCQAYRH 68
          +CV+CG   + L+  Y  G  N+ L +C NCK  AD YIE +V+++ +D+IL K Q YRH
Sbjct: 2  KCVECGAEVDSLYTYYGRGTSNIRLAQCKNCKQFADKYIELDVVLISMDVILMKPQVYRH 61

Query: 69 LLYNLL 73
          LL+N L
Sbjct: 62 LLFNSL 67

[Close]

BLAST of Tan0001295 vs. ExPASy Swiss-Prot
Match: Q54GD9 (Protein arv1 homolog OS=Dictyostelium discoideum OX=44689 GN=arv1 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.7e-10
Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 10 CVQCGFRTNQLFVLY---SPGNMHLMKCDNCKSVADDYIECEVMILLIDLILHKCQAYRH 69
          C++CG   N ++  +     GN+ L +C +C   AD Y+E + +I+ +DL LHK QAYRH
Sbjct: 3  CIECGRPVNDVYKEFGKAGSGNIRLTRCASCNQTADKYVEYDFIIVFLDLFLHKAQAYRH 62

Query: 70 LLYN 71
          LL+N
Sbjct: 63 LLFN 66

[Close]

BLAST of Tan0001295 vs. ExPASy Swiss-Prot
Match: Q9D0U9 (Protein ARV1 OS=Mus musculus OX=10090 GN=Arv1 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-08
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 9  RCVQCGFRTNQLFVLYSPGNMHLMKCDNCKSVADDYIECEVMILLIDLILHKCQAYRHLL 68
          RC++C     +L+  YS G + +  C +C+   D YIE + +I+LI+ IL K QAYRH+L
Sbjct: 28 RCIECNREAQELYRDYSHGVLKITICKSCQKPVDKYIEYDPVIILINAILCKTQAYRHIL 87

Query: 69 YN 71
          +N
Sbjct: 88 FN 89

[Close]

BLAST of Tan0001295 vs. NCBI nr
Match: XP_038893484.1 (protein ARV 2-like [Benincasa hispida])

HSP 1 Score: 183.7 bits (465), Expect = 9.8e-43
Identity = 86/95 (90.53%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MGRETNGNRCVQCGFRTNQLFVLYSPGNMHLMKCDNCKSVADDYIECEVMILLIDLILHK 60
          M RETNGNRCVQCGFRTNQLFVLYSPGNMHLMKCDNCKSVAD+YIECE+MI+L+DLILHK
Sbjct: 1  MERETNGNRCVQCGFRTNQLFVLYSPGNMHLMKCDNCKSVADEYIECELMIVLVDLILHK 60

Query: 61 CQAYRHLLYNLLDRDRLSCQDLMWKFGLSFLLLDA 96
           QAYRHLLYNLLDR+RLS QDLMWK GLSFLLLDA
Sbjct: 61 RQAYRHLLYNLLDRNRLSRQDLMWKLGLSFLLLDA 95

[Close]

BLAST of Tan0001295 vs. NCBI nr
Match: XP_008437754.1 (PREDICTED: protein arv1 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 179.9 bits (455), Expect = 1.4e-41
Identity = 84/95 (88.42%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1  MGRETNGNRCVQCGFRTNQLFVLYSPGNMHLMKCDNCKSVADDYIECEVMILLIDLILHK 60
          MG ETNGNRCVQCGFRT+QLFVLYSPGNMHLMKCDNCKSVAD+YIECEVMI+L+DLILHK
Sbjct: 1  MGTETNGNRCVQCGFRTSQLFVLYSPGNMHLMKCDNCKSVADEYIECEVMIVLVDLILHK 60

Query: 61 CQAYRHLLYNLLDRDRLSCQDLMWKFGLSFLLLDA 96
           QAYRHLLYN  DR+RLS QDLMWK GLSFLLLDA
Sbjct: 61 RQAYRHLLYNQFDRNRLSRQDLMWKLGLSFLLLDA 95

[Close]

BLAST of Tan0001295 vs. NCBI nr
Match: XP_008437755.1 (PREDICTED: protein arv1 homolog isoform X3 [Cucumis melo])

HSP 1 Score: 179.9 bits (455), Expect = 1.4e-41
Identity = 84/95 (88.42%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1  MGRETNGNRCVQCGFRTNQLFVLYSPGNMHLMKCDNCKSVADDYIECEVMILLIDLILHK 60
          MG ETNGNRCVQCGFRT+QLFVLYSPGNMHLMKCDNCKSVAD+YIECEVMI+L+DLILHK
Sbjct: 1  MGTETNGNRCVQCGFRTSQLFVLYSPGNMHLMKCDNCKSVADEYIECEVMIVLVDLILHK 60

Query: 61 CQAYRHLLYNLLDRDRLSCQDLMWKFGLSFLLLDA 96
           QAYRHLLYN  DR+RLS QDLMWK GLSFLLLDA
Sbjct: 61 RQAYRHLLYNQFDRNRLSRQDLMWKLGLSFLLLDA 95

[Close]

BLAST of Tan0001295 vs. NCBI nr
Match: XP_008437757.1 (PREDICTED: protein arv1 homolog isoform X5 [Cucumis melo])

HSP 1 Score: 179.9 bits (455), Expect = 1.4e-41
Identity = 84/95 (88.42%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1  MGRETNGNRCVQCGFRTNQLFVLYSPGNMHLMKCDNCKSVADDYIECEVMILLIDLILHK 60
          MG ETNGNRCVQCGFRT+QLFVLYSPGNMHLMKCDNCKSVAD+YIECEVMI+L+DLILHK
Sbjct: 1  MGTETNGNRCVQCGFRTSQLFVLYSPGNMHLMKCDNCKSVADEYIECEVMIVLVDLILHK 60

Query: 61 CQAYRHLLYNLLDRDRLSCQDLMWKFGLSFLLLDA 96
           QAYRHLLYN  DR+RLS QDLMWK GLSFLLLDA
Sbjct: 61 RQAYRHLLYNQFDRNRLSRQDLMWKLGLSFLLLDA 95

[Close]

BLAST of Tan0001295 vs. NCBI nr
Match: XP_008437752.1 (PREDICTED: protein arv1 homolog isoform X1 [Cucumis melo] >XP_016899054.1 PREDICTED: protein arv1 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 179.9 bits (455), Expect = 1.4e-41
Identity = 84/95 (88.42%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1  MGRETNGNRCVQCGFRTNQLFVLYSPGNMHLMKCDNCKSVADDYIECEVMILLIDLILHK 60
          MG ETNGNRCVQCGFRT+QLFVLYSPGNMHLMKCDNCKSVAD+YIECEVMI+L+DLILHK
Sbjct: 1  MGTETNGNRCVQCGFRTSQLFVLYSPGNMHLMKCDNCKSVADEYIECEVMIVLVDLILHK 60

Query: 61 CQAYRHLLYNLLDRDRLSCQDLMWKFGLSFLLLDA 96
           QAYRHLLYN  DR+RLS QDLMWK GLSFLLLDA
Sbjct: 61 RQAYRHLLYNQFDRNRLSRQDLMWKLGLSFLLLDA 95

[Close]

BLAST of Tan0001295 vs. ExPASy TrEMBL
Match: A0A1S4DSU3 (protein arv1 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483093 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.9e-42
Identity = 84/95 (88.42%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1  MGRETNGNRCVQCGFRTNQLFVLYSPGNMHLMKCDNCKSVADDYIECEVMILLIDLILHK 60
          MG ETNGNRCVQCGFRT+QLFVLYSPGNMHLMKCDNCKSVAD+YIECEVMI+L+DLILHK
Sbjct: 1  MGTETNGNRCVQCGFRTSQLFVLYSPGNMHLMKCDNCKSVADEYIECEVMIVLVDLILHK 60

Query: 61 CQAYRHLLYNLLDRDRLSCQDLMWKFGLSFLLLDA 96
           QAYRHLLYN  DR+RLS QDLMWK GLSFLLLDA
Sbjct: 61 RQAYRHLLYNQFDRNRLSRQDLMWKLGLSFLLLDA 95

[Close]

BLAST of Tan0001295 vs. ExPASy TrEMBL
Match: A0A1S3AVC0 (protein arv1 homolog isoform X3 OS=Cucumis melo OX=3656 GN=LOC103483093 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.9e-42
Identity = 84/95 (88.42%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1  MGRETNGNRCVQCGFRTNQLFVLYSPGNMHLMKCDNCKSVADDYIECEVMILLIDLILHK 60
          MG ETNGNRCVQCGFRT+QLFVLYSPGNMHLMKCDNCKSVAD+YIECEVMI+L+DLILHK
Sbjct: 1  MGTETNGNRCVQCGFRTSQLFVLYSPGNMHLMKCDNCKSVADEYIECEVMIVLVDLILHK 60

Query: 61 CQAYRHLLYNLLDRDRLSCQDLMWKFGLSFLLLDA 96
           QAYRHLLYN  DR+RLS QDLMWK GLSFLLLDA
Sbjct: 61 RQAYRHLLYNQFDRNRLSRQDLMWKLGLSFLLLDA 95

[Close]

BLAST of Tan0001295 vs. ExPASy TrEMBL
Match: A0A1S3AUE9 (protein arv1 homolog isoform X5 OS=Cucumis melo OX=3656 GN=LOC103483093 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.9e-42
Identity = 84/95 (88.42%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1  MGRETNGNRCVQCGFRTNQLFVLYSPGNMHLMKCDNCKSVADDYIECEVMILLIDLILHK 60
          MG ETNGNRCVQCGFRT+QLFVLYSPGNMHLMKCDNCKSVAD+YIECEVMI+L+DLILHK
Sbjct: 1  MGTETNGNRCVQCGFRTSQLFVLYSPGNMHLMKCDNCKSVADEYIECEVMIVLVDLILHK 60

Query: 61 CQAYRHLLYNLLDRDRLSCQDLMWKFGLSFLLLDA 96
           QAYRHLLYN  DR+RLS QDLMWK GLSFLLLDA
Sbjct: 61 RQAYRHLLYNQFDRNRLSRQDLMWKLGLSFLLLDA 95

[Close]

BLAST of Tan0001295 vs. ExPASy TrEMBL
Match: A0A1S3AVD2 (protein arv1 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483093 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.9e-42
Identity = 84/95 (88.42%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1  MGRETNGNRCVQCGFRTNQLFVLYSPGNMHLMKCDNCKSVADDYIECEVMILLIDLILHK 60
          MG ETNGNRCVQCGFRT+QLFVLYSPGNMHLMKCDNCKSVAD+YIECEVMI+L+DLILHK
Sbjct: 1  MGTETNGNRCVQCGFRTSQLFVLYSPGNMHLMKCDNCKSVADEYIECEVMIVLVDLILHK 60

Query: 61 CQAYRHLLYNLLDRDRLSCQDLMWKFGLSFLLLDA 96
           QAYRHLLYN  DR+RLS QDLMWK GLSFLLLDA
Sbjct: 61 RQAYRHLLYNQFDRNRLSRQDLMWKLGLSFLLLDA 95

[Close]

BLAST of Tan0001295 vs. ExPASy TrEMBL
Match: A0A0A0L5K8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G116660 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.2e-41
Identity = 83/95 (87.37%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1   MGRETNGNRCVQCGFRTNQLFVLYSPGNMHLMKCDNCKSVADDYIECEVMILLIDLILHK 60
           MGRETNGNRCVQCGFRT+QLFVLYSPGNMHLMKCDNCKSVAD+YIECE MI+L+DLILHK
Sbjct: 48  MGRETNGNRCVQCGFRTSQLFVLYSPGNMHLMKCDNCKSVADEYIECEAMIVLVDLILHK 107

Query: 61  CQAYRHLLYNLLDRDRLSCQDLMWKFGLSFLLLDA 96
            QAYRHLLYN  DR+RLS +DLMWK GLSFLLLDA
Sbjct: 108 RQAYRHLLYNQFDRNRLSRKDLMWKLGLSFLLLDA 142

[Close]

BLAST of Tan0001295 vs. TAIR 10
Match: AT4G01510.1 (Arv1-like protein )

HSP 1 Score: 119.8 bits (299), Expect = 1.6e-27
Identity = 49/85 (57.65%), Postives = 69/85 (81.18%), Query Frame = 0


Query: 10 CVQCGFRTNQLFVLYSPGNMHLMKCDNCKSVADDYIECEVMILLIDLILHKCQAYRHLLY 69
          CV+CG +   LF+ YSPGN  LMKC+NC+ VAD+Y+ECE++I+ IDLILHK +AYRHLLY
Sbjct: 8  CVECGHKVKSLFIQYSPGNFRLMKCENCEEVADEYVECELLIIFIDLILHKTKAYRHLLY 67

Query: 70 NLLDRDRLSCQDLMWKFGLSFLLLD 95
          N+++++  + Q L+WK  L++LLLD
Sbjct: 68 NVVNQESANVQHLLWKLVLAYLLLD 92

[Close]

BLAST of Tan0001295 vs. TAIR 10
Match: AT1G01020.1 (Arv1-like protein )

HSP 1 Score: 116.3 bits (290), Expect = 1.8e-26
Identity = 51/87 (58.62%), Postives = 66/87 (75.86%), Query Frame = 0


Query: 8  NRCVQCGFRTNQLFVLYSPGNMHLMKCDNCKSVADDYIECEVMILLIDLILHKCQAYRHL 67
          +RCV CGFR   LF+ YSPGN+ LMKC NCK VAD+YIECE MI+ IDLILH+ + YRH+
Sbjct: 6  HRCVGCGFRVKSLFIQYSPGNIRLMKCGNCKEVADEYIECERMIIFIDLILHRPKVYRHV 65

Query: 68 LYNLLDRDRLSCQDLMWKFGLSFLLLD 95
          LYN ++   ++ Q L+WK   ++LLLD
Sbjct: 66 LYNAINPATVNIQHLLWKLVFAYLLLD 92

[Close]

BLAST of Tan0001295 vs. TAIR 10
Match: AT1G01020.2 (Arv1-like protein )

HSP 1 Score: 116.3 bits (290), Expect = 1.8e-26
Identity = 51/87 (58.62%), Postives = 66/87 (75.86%), Query Frame = 0


Query: 8  NRCVQCGFRTNQLFVLYSPGNMHLMKCDNCKSVADDYIECEVMILLIDLILHKCQAYRHL 67
          +RCV CGFR   LF+ YSPGN+ LMKC NCK VAD+YIECE MI+ IDLILH+ + YRH+
Sbjct: 6  HRCVGCGFRVKSLFIQYSPGNIRLMKCGNCKEVADEYIECERMIIFIDLILHRPKVYRHV 65

Query: 68 LYNLLDRDRLSCQDLMWKFGLSFLLLD 95
          LYN ++   ++ Q L+WK   ++LLLD
Sbjct: 66 LYNAINPATVNIQHLLWKLVFAYLLLD 92

The following BLAST results are available for this feature:

BLAST of Tan0001295 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5MK23	2.3e-26	57.65	Protein ARV 2 OS=Arabidopsis thaliana OX=3702 GN=ARV2 PE=1 SV=1	[more]
Q5MK24	2.5e-25	58.62	Protein ARV 1 OS=Arabidopsis thaliana OX=3702 GN=ARV1 PE=2 SV=1	[more]
Q9HDX5	1.0e-10	46.97	Protein arv1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN...	[more]
Q54GD9	8.7e-10	42.19	Protein arv1 homolog OS=Dictyostelium discoideum OX=44689 GN=arv1 PE=3 SV=1	[more]
Q9D0U9	3.7e-08	41.94	Protein ARV1 OS=Mus musculus OX=10090 GN=Arv1 PE=2 SV=1	[more]

BLAST of Tan0001295 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893484.1	9.8e-43	90.53	protein ARV 2-like [Benincasa hispida]	[more]
XP_008437754.1	1.4e-41	88.42	PREDICTED: protein arv1 homolog isoform X2 [Cucumis melo]	[more]
XP_008437755.1	1.4e-41	88.42	PREDICTED: protein arv1 homolog isoform X3 [Cucumis melo]	[more]
XP_008437757.1	1.4e-41	88.42	PREDICTED: protein arv1 homolog isoform X5 [Cucumis melo]	[more]
XP_008437752.1	1.4e-41	88.42	PREDICTED: protein arv1 homolog isoform X1 [Cucumis melo] >XP_016899054.1 PREDIC...	[more]

BLAST of Tan0001295 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DSU3	6.9e-42	88.42	protein arv1 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483093 PE=3 SV=...	[more]
A0A1S3AVC0	6.9e-42	88.42	protein arv1 homolog isoform X3 OS=Cucumis melo OX=3656 GN=LOC103483093 PE=3 SV=...	[more]
A0A1S3AUE9	6.9e-42	88.42	protein arv1 homolog isoform X5 OS=Cucumis melo OX=3656 GN=LOC103483093 PE=3 SV=...	[more]
A0A1S3AVD2	6.9e-42	88.42	protein arv1 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483093 PE=3 SV=...	[more]
A0A0A0L5K8	1.2e-41	87.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G116660 PE=3 SV=1	[more]

BLAST of Tan0001295 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G01510.1	1.6e-27	57.65	Arv1-like protein	[more]
AT1G01020.1	1.8e-26	58.62	Arv1-like protein	[more]
AT1G01020.2	1.8e-26	58.62	Arv1-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007290	Arv1 protein	PFAM	PF04161	Arv1	coord: 9..100 e-value: 8.4E-30 score: 104.5
IPR007290	Arv1 protein	PANTHER	PTHR14467	ARV1	coord: 8..93
None	No IPR available	PANTHER	PTHR14467:SF1	PROTEIN ARV 2	coord: 8..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0001295.1	Tan0001295.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032366	intracellular sterol transport
biological_process	GO:0097036	regulation of plasma membrane sterol distribution
biological_process	GO:0006665	sphingolipid metabolic process
biological_process	GO:0016125	sterol metabolic process
cellular_component	GO:0032541	cortical endoplasmic reticulum
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane