MC00g0370 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC00g0370
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
Locationscaffold7: 453641 .. 453760 (-)
RNA-Seq ExpressionMC00g0370
SyntenyMC00g0370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCTGTTCCATGTGTCTTGGAAATAAGGAGACAATTGATCACTTATTCCTCCATTGTACTTTTGCCTCAAGGTGTTGGTCTTTTTTAATGAGAGAGTGCGGCCTTTCGGGTTGCCTTTCT

mRNA sequence

GTCTGTTCCATGTGTCTTGGAAATAAGGAGACAATTGATCACTTATTCCTCCATTGTACTTTTGCCTCAAGGTGTTGGTCTTTTTTAATGAGAGAGTGCGGCCTTTCGGGTTGCCTTTCT

Coding sequence (CDS)

GTCTGTTCCATGTGTCTTGGAAATAAGGAGACAATTGATCACTTATTCCTCCATTGTACTTTTGCCTCAAGGTGTTGGTCTTTTTTAATGAGAGAGTGCGGCCTTTCGGGTTGCCTTTCT

Protein sequence

VCSMCLGNKETIDHLFLHCTFASRCWSFLMRECGLSGCLS
Homology
BLAST of MC00g0370 vs. NCBI nr
Match: XP_039140405.1 (uncharacterized protein LOC120277612 [Dioscorea cayenensis subsp. rotundata])

HSP 1 Score: 48.1 bits (113), Expect = 4.23e-05
Identity = 17/27 (62.96%), Postives = 20/27 (74.07%), Query Frame = 0

Query: 2  CSMCLGNKETIDHLFLHCTFASRCWSF 28
          C MC  N ET+DHL +HC FASR W+F
Sbjct: 18 CVMCYNNSETVDHLLIHCDFASRIWAF 44

BLAST of MC00g0370 vs. NCBI nr
Match: XP_038994273.1 (uncharacterized protein LOC120118241 [Hibiscus syriacus])

HSP 1 Score: 48.5 bits (114), Expect = 6.90e-05
Identity = 17/35 (48.57%), Postives = 25/35 (71.43%), Query Frame = 0

Query: 1   VCSMCLGNKETIDHLFLHCTFASRCWSFLMRECGL 35
           VC +C GN ++ +HLF  C+FAS  W+ ++REC L
Sbjct: 703 VCGLCYGNLKSRNHLFFECSFASEIWNAILRECDL 737

BLAST of MC00g0370 vs. NCBI nr
Match: ACF78995.1 (unknown [Zea mays] >AIB05810.1 orphans transcription factor, partial [Zea mays])

HSP 1 Score: 48.5 bits (114), Expect = 6.91e-05
Identity = 17/36 (47.22%), Postives = 24/36 (66.67%), Query Frame = 0

Query: 2   CSMCLGNKETIDHLFLHCTFASRCWSFLMRECGLSG 37
           C +C   +ETIDHL ++C F+  CW  L+R+ GL G
Sbjct: 448 CPLCEQERETIDHLLVNCVFSRECWFLLLRQFGLQG 483

BLAST of MC00g0370 vs. NCBI nr
Match: XP_030479135.1 (uncharacterized protein LOC115696374 [Cannabis sativa])

HSP 1 Score: 48.5 bits (114), Expect = 6.92e-05
Identity = 18/34 (52.94%), Postives = 23/34 (67.65%), Query Frame = 0

Query: 2   CSMCLGNKETIDHLFLHCTFASRCWSFLMRECGL 35
           C  C  N E ++HLFLHC F+S+ WS L+ E GL
Sbjct: 227 CVCCKSNGEEVEHLFLHCKFSSKLWSMLLEEFGL 260

BLAST of MC00g0370 vs. NCBI nr
Match: XP_039140503.1 (uncharacterized protein LOC120277716 [Dioscorea cayenensis subsp. rotundata])

HSP 1 Score: 48.1 bits (113), Expect = 8.06e-05
Identity = 17/34 (50.00%), Postives = 22/34 (64.71%), Query Frame = 0

Query: 2   CSMCLGNKETIDHLFLHCTFASRCWSFLMRECGL 35
           C +C  N ET+DHL +HC FASR W+F +    L
Sbjct: 95  CVLCYNNSETVDHLLIHCEFASRIWAFYVNNLHL 128

BLAST of MC00g0370 vs. ExPASy TrEMBL
Match: A0A2N9GM20 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28351 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 3.33e-05
Identity = 17/35 (48.57%), Postives = 23/35 (65.71%), Query Frame = 0

Query: 2    CSMCLGNKETIDHLFLHCTFASRCWSFLMRECGLS 36
            C MC    ET+DHL LHC FA + W+F+ +  G+S
Sbjct: 1577 CCMCRNADETVDHLMLHCQFARQLWTFIFKSVGIS 1611

BLAST of MC00g0370 vs. ExPASy TrEMBL
Match: A0A803QGT5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 3.34e-05
Identity = 18/34 (52.94%), Postives = 23/34 (67.65%), Query Frame = 0

Query: 2    CSMCLGNKETIDHLFLHCTFASRCWSFLMRECGL 35
            C  C  N E ++HLFLHC F+S+ WS L+ E GL
Sbjct: 1378 CVCCKSNGEEVEHLFLHCKFSSKLWSMLLEEFGL 1411

BLAST of MC00g0370 vs. ExPASy TrEMBL
Match: A0A2N9GLD5 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31139 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 3.34e-05
Identity = 17/35 (48.57%), Postives = 23/35 (65.71%), Query Frame = 0

Query: 2    CSMCLGNKETIDHLFLHCTFASRCWSFLMRECGLS 36
            C MC    ET+DHL LHC FA + W+F+ +  G+S
Sbjct: 1338 CCMCRNADETVDHLMLHCQFARQLWTFIFKSVGIS 1372

BLAST of MC00g0370 vs. ExPASy TrEMBL
Match: A0A7N2MCY6 (zf-RVT domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 3.34e-05
Identity = 20/35 (57.14%), Postives = 22/35 (62.86%), Query Frame = 0

Query: 2    CSMCLGNKETIDHLFLHCTFASRCWSFLMRECGLS 36
            C MC  N ET+DHLFLHC  A R WS + R  G S
Sbjct: 1011 CIMCRSNGETVDHLFLHCGKAYRWWSLVFRSFGFS 1045

BLAST of MC00g0370 vs. ExPASy TrEMBL
Match: A0A2N9FDY2 (zf-RVT domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12993 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 3.35e-05
Identity = 19/38 (50.00%), Postives = 23/38 (60.53%), Query Frame = 0

Query: 2   CSMCLGNKETIDHLFLHCTFASRCWSFLMRECGLSGCL 39
           C MC   +ET+DHL LHC  A   WSF+ R  G+ G L
Sbjct: 362 CCMCKAAEETVDHLLLHCGVAREIWSFVFRSFGIDGVL 399

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_039140405.14.23e-0562.96uncharacterized protein LOC120277612 [Dioscorea cayenensis subsp. rotundata][more]
XP_038994273.16.90e-0548.57uncharacterized protein LOC120118241 [Hibiscus syriacus][more]
ACF78995.16.91e-0547.22unknown [Zea mays] >AIB05810.1 orphans transcription factor, partial [Zea mays][more]
XP_030479135.16.92e-0552.94uncharacterized protein LOC115696374 [Cannabis sativa][more]
XP_039140503.18.06e-0550.00uncharacterized protein LOC120277716 [Dioscorea cayenensis subsp. rotundata][more]
Match NameE-valueIdentityDescription
A0A2N9GM203.33e-0548.57Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A803QGT53.34e-0552.94Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A2N9GLD53.34e-0548.57Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A7N2MCY63.34e-0557.14zf-RVT domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A2N9FDY23.35e-0550.00zf-RVT domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12993 P... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC00g0370.1MC00g0370.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0110165 cellular anatomical entity