MC04g0509.1 (mRNA) Bitter gourd (Dali-11) v1

Overview
NameMC04g0509.1
TypemRNA
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC04: 4294779 .. 4295027 (-)
Sequence length249
RNA-Seq ExpressionMC04g0509.1
SyntenyMC04g0509.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATTTCGCCCACTCTGGAGATGTGTATGACGGAGCTCGCCAACTTCCGAGATCGACTCGGAGCAGCTTCTTCCACTTCCACGCGGTTCTTCCCCAGCCTCAGAGACAAACAACCACCGATTCGCGGACAAAAATCGGTGGAGTCTTCCGCTGCGACACACAGCGGAGCTGCAATCGATGATCGGAAGGAGGTGATTCTCTCGGAATCCACCATTTTTTTGCTCATCGATCGGTTTATCGCCTGG

mRNA sequence

ATGAAGATTTCGCCCACTCTGGAGATGTGTATGACGGAGCTCGCCAACTTCCGAGATCGACTCGGAGCAGCTTCTTCCACTTCCACGCGGTTCTTCCCCAGCCTCAGAGACAAACAACCACCGATTCGCGGACAAAAATCGGTGGAGTCTTCCGCTGCGACACACAGCGGAGCTGCAATCGATGATCGGAAGGAGGTGATTCTCTCGGAATCCACCATTTTTTTGCTCATCGATCGGTTTATCGCCTGG

Coding sequence (CDS)

ATGAAGATTTCGCCCACTCTGGAGATGTGTATGACGGAGCTCGCCAACTTCCGAGATCGACTCGGAGCAGCTTCTTCCACTTCCACGCGGTTCTTCCCCAGCCTCAGAGACAAACAACCACCGATTCGCGGACAAAAATCGGTGGAGTCTTCCGCTGCGACACACAGCGGAGCTGCAATCGATGATCGGAAGGAGGTGATTCTCTCGGAATCCACCATTTTTTTGCTCATCGATCGGTTTATCGCCTGG

Protein sequence

MKISPTLEMCMTELANFRDRLGAASSTSTRFFPSLRDKQPPIRGQKSVESSAATHSGAAIDDRKEVILSESTIFLLIDRFIAW
Homology
BLAST of MC04g0509.1 vs. NCBI nr
Match: KAG6572007.1 (hypothetical protein SDJN03_28735, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.7 bits (221), Expect = 2.57e-21
Identity = 50/79 (63.29%), Postives = 59/79 (74.68%), Query Frame = 0

Query: 1  MKISPTLEMCMTELANFRDRLGAASSTSTRFFPSLRDKQPPIRGQKSVESSAATHSGAAI 60
          MKISPT++MC++ELA FRDR    + +S RFFP LRD+    R +KS+E   AT    AI
Sbjct: 1  MKISPTIDMCISELAKFRDRF---AGSSRRFFPKLRDESTTDRREKSIEE--ATKQIRAI 60

Query: 61 DDRKEVILSESTIFLLIDR 79
          DDRKEVILSESTIFLLIDR
Sbjct: 61 DDRKEVILSESTIFLLIDR 74

BLAST of MC04g0509.1 vs. NCBI nr
Match: KAA0031261.1 (hypothetical protein E6C27_scaffold139G00140 [Cucumis melo var. makuwa] >TYK06713.1 hypothetical protein E5676_scaffold13G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 5.06e-12
Identity = 40/77 (51.95%), Postives = 50/77 (64.94%), Query Frame = 0

Query: 9  MCMTELANFRDRLGAASSTSTRFFPSLRDKQPPIRGQKSVESSAATHSGAAIDDRK--EV 68
          MCM++LA FRD  G  +++S+RF P+L       R Q S++     +   AIDD K  EV
Sbjct: 1  MCMSQLAKFRD--GFLANSSSRFLPTLTTTD---RRQISIQEPTKQNKPIAIDDPKPKEV 60

Query: 69 ILSESTIFLLIDRFIAW 83
          ILSESTIFLLIDRFI W
Sbjct: 61 ILSESTIFLLIDRFIVW 72

BLAST of MC04g0509.1 vs. ExPASy TrEMBL
Match: A0A0A0K854 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075565 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.89e-16
Identity = 45/86 (52.33%), Postives = 56/86 (65.12%), Query Frame = 0

Query: 1  MKISPTLEMCMTELANFRDRLGAASSTSTRFFPSLRDKQPPIRGQKSVESSAATHSGAAI 60
          MKISPT+EMCM +LA FRD     S++S+RF P++       R Q S++     +   AI
Sbjct: 1  MKISPTVEMCMNQLAKFRDVF--LSNSSSRFLPTITTTD---RRQISIQDPTKQNKAIAI 60

Query: 61 DDR---KEVILSESTIFLLIDRFIAW 83
          D+    KEVILSESTIFLLIDRFI W
Sbjct: 61 DEPSSPKEVILSESTIFLLIDRFIVW 81

BLAST of MC04g0509.1 vs. ExPASy TrEMBL
Match: A0A5A7SNR8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00140 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.45e-12
Identity = 40/77 (51.95%), Postives = 50/77 (64.94%), Query Frame = 0

Query: 9  MCMTELANFRDRLGAASSTSTRFFPSLRDKQPPIRGQKSVESSAATHSGAAIDDRK--EV 68
          MCM++LA FRD  G  +++S+RF P+L       R Q S++     +   AIDD K  EV
Sbjct: 1  MCMSQLAKFRD--GFLANSSSRFLPTLTTTD---RRQISIQEPTKQNKPIAIDDPKPKEV 60

Query: 69 ILSESTIFLLIDRFIAW 83
          ILSESTIFLLIDRFI W
Sbjct: 61 ILSESTIFLLIDRFIVW 72

BLAST of MC04g0509.1 vs. ExPASy TrEMBL
Match: A0A7J6F845 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_013948 PE=4 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 6.00e-04
Identity = 27/81 (33.33%), Postives = 45/81 (55.56%), Query Frame = 0

Query: 3  ISPTLEMCMTELANFRDRLGAASSTSTRFFPSLR---DKQPPIRGQKSVESSAATHSGAA 62
          +S  +EMCM EL     ++GAA      F PS     + Q   + +++++++AA+ S ++
Sbjct: 1  MSAVVEMCMNELGKLGQKVGAAGKRRLVFLPSKPKQDENQHESQNEENIKAAAASSSYSS 60

Query: 63 IDDRKEVILSESTIFLLIDRF 80
                  LSE T+FLL+DRF
Sbjct: 61 ST------LSEDTVFLLMDRF 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6572007.12.57e-2163.29hypothetical protein SDJN03_28735, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0031261.15.06e-1251.95hypothetical protein E6C27_scaffold139G00140 [Cucumis melo var. makuwa] >TYK0671... [more]
Match NameE-valueIdentityDescription
A0A0A0K8544.89e-1652.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075565 PE=4 SV=1[more]
A0A5A7SNR82.45e-1251.95Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A7J6F8456.00e-0433.33Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_013948 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..58

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MC04g0509MC04g0509gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MC04g0509.1-cdsMC04g0509.1-cds-MC04:4294779..4295027CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MC04g0509.1MC04g0509.1-proteinpolypeptide