Tan0011337 (gene) Snake gourd v1

Overview


Name	Tan0011337
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Retrotransposon protein
Location	LG11: 50621587 .. 50622280 (-)
RNA-Seq Expression	Tan0011337
Synteny	Tan0011337

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGGTTCGTCGTCAAAATCTAAGCAACCCAAACATATGTGGACTCCAGAAGAAGATGTCGTGTTGGTTGATGCATTATTGCACCTCGTCCATGTCGGTGGATGGCGTGCCGACAATGGGACATTTAGACCTGGATATTTATCACAGGTAAAGAAGATAATGAAAGAGAAGATGCCAAATGTCGACCTACATGTGAGCCCTAATCTAGAGTCAAGAGTGAGAATTTTAAAGAAGCAGTACAACGCGATTGCGGAGATGTTAGGTCCTGCATGTAGTGGATTCGGATGGAACGAGGAGCGCAAGTGCGTGGAGGCCGAGAAAGACATTCGATGCATGGGTGATGGTAATGGAAATCAACATATAATTTCTTATTTTAAAATCTCAACATGTCACTGTAAAATGATCTTTATGCATATTGTTTATGATGCAGGCTCATCCACATGCAAAAGGTCTTCGAAATAGGCCATTCCCTTTGTTTAACGATCTAGCAGTCATATTTGGAAAAGATAGAGCAACAGGTGCCGGTGCACAAACTCCATCCGACATGGCATCGGATGCTGCAACTGACTTAGAAGATGATCTAAATCCTGATTTTCCCGGTTCATTCCTCCGTGATCCACCGCCAGTGGACGTATCGATGGGCGAGGACACATCAGCCACACCTACGAGTCGAACACAAGAAGTCGGATGA

mRNA sequence

ATGGCAGGTTCGTCGTCAAAATCTAAGCAACCCAAACATATGTGGACTCCAGAAGAAGATGTCGTGTTGGTTGATGCATTATTGCACCTCGTCCATGTCGGTGGATGGCGTGCCGACAATGGGACATTTAGACCTGGATATTTATCACAGGTAAAGAAGATAATGAAAGAGAAGATGCCAAATGTCGACCTACATGTGAGCCCTAATCTAGAGTCAAGAGTGAGAATTTTAAAGAAGCAGTACAACGCGATTGCGGAGATGTTAGGTCCTGCATGTAGTCTTCGAAATAGGCCATTCCCTTTGTTTAACGATCTAGCAGTCATATTTGGAAAAGATAGAGCAACAGGTGCCGGTGCACAAACTCCATCCGACATGGCATCGGATGCTGCAACTGACTTAGAAGATGATCTAAATCCTGATTTTCCCGGTTCATTCCTCCGTGATCCACCGCCAGTGGACGTATCGATGGGCGAGGACACATCAGCCACACCTACGAGTCGAACACAAGAAGTCGGATGA

Coding sequence (CDS)

ATGGCAGGTTCGTCGTCAAAATCTAAGCAACCCAAACATATGTGGACTCCAGAAGAAGATGTCGTGTTGGTTGATGCATTATTGCACCTCGTCCATGTCGGTGGATGGCGTGCCGACAATGGGACATTTAGACCTGGATATTTATCACAGGTAAAGAAGATAATGAAAGAGAAGATGCCAAATGTCGACCTACATGTGAGCCCTAATCTAGAGTCAAGAGTGAGAATTTTAAAGAAGCAGTACAACGCGATTGCGGAGATGTTAGGTCCTGCATGTAGTCTTCGAAATAGGCCATTCCCTTTGTTTAACGATCTAGCAGTCATATTTGGAAAAGATAGAGCAACAGGTGCCGGTGCACAAACTCCATCCGACATGGCATCGGATGCTGCAACTGACTTAGAAGATGATCTAAATCCTGATTTTCCCGGTTCATTCCTCCGTGATCCACCGCCAGTGGACGTATCGATGGGCGAGGACACATCAGCCACACCTACGAGTCGAACACAAGAAGTCGGATGA

Protein sequence

MAGSSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVDLHVSPNLESRVRILKKQYNAIAEMLGPACSLRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDLEDDLNPDFPGSFLRDPPPVDVSMGEDTSATPTSRTQEVG

Homology

[Close]

BLAST of Tan0011337 vs. NCBI nr
Match: KAA0033487.1 (uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 159.5 bits (402), Expect = 2.7e-35
Identity = 88/200 (44.00%), Postives = 113/200 (56.50%), Query Frame = 0


Query: 4   SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVD 63
           +S  SK  KH WT  ED  LV+ LL LV  G WR DNGTF+PGYL QV+K+MKEK+   +
Sbjct: 87  ASINSKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILESN 146

Query: 64  LHVSPNLESRVRILKKQYNAIAEMLGPACS------------------------------ 123
           + V+PNLES V+ILKKQY  IAEM+GP CS                              
Sbjct: 147 IQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNARY 206

Query: 124 LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPV 173
           L N+PFP F DL ++FG+DRATG   +TP +M S  A D  EDD+  +     + +P  +
Sbjct: 207 LLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGSQTARDTEEDDMIINLEDFDIPNPHGL 266

[Close]

BLAST of Tan0011337 vs. NCBI nr
Match: TYK26842.1 (uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 159.5 bits (402), Expect = 2.7e-35
Identity = 88/200 (44.00%), Postives = 113/200 (56.50%), Query Frame = 0


Query: 4   SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVD 63
           +S  SK  KH WT  ED  LV+ LL LV  G WR DNGTF+PGYL QV+K+MKEK+   +
Sbjct: 87  ASINSKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILESN 146

Query: 64  LHVSPNLESRVRILKKQYNAIAEMLGPACS------------------------------ 123
           + V+PNLES V+ILKKQY  IAEM+GP CS                              
Sbjct: 147 IQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNARY 206

Query: 124 LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPV 173
           L N+PFP F DL ++FG+DRATG   +TP +M S  A D  EDD+  +     + +P  +
Sbjct: 207 LLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGSQTARDTEEDDMIINLEDFDIPNPHGL 266

[Close]

BLAST of Tan0011337 vs. NCBI nr
Match: TYJ96933.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.7 bits (369), Expect = 1.8e-31
Identity = 83/200 (41.50%), Postives = 114/200 (57.00%), Query Frame = 0


Query: 4   SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVD 63
           +S+ SK  KH WT  +D  LV+ LL LV  GGWRA+N TF+P YL QV+K+MKEK+P  +
Sbjct: 2   ASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRSN 61

Query: 64  LHVSPNLESRVRILKKQYNAIAEMLGPACS------------------------------ 123
           + V+ NLESRV+ LKKQY AIA+M+GPACS                              
Sbjct: 62  IQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNARG 121

Query: 124 LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPV 173
           L N+PF  F DL ++FG+D+ATG   +   +MAS  A D  EDD++ +     + +P  +
Sbjct: 122 LLNKPFAYFYDLEIVFGRDKATGGRCKPFVEMASQTARDTEEDDMDINLEDFDIPNPHGL 181

[Close]

BLAST of Tan0011337 vs. NCBI nr
Match: XP_008455678.1 (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 146.7 bits (369), Expect = 1.8e-31
Identity = 83/200 (41.50%), Postives = 114/200 (57.00%), Query Frame = 0


Query: 4   SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVD 63
           +S+ SK  KH WT  +D  LV+ LL LV  GGWRA+N TF+P YL QV+K+MKEK+P  +
Sbjct: 34  ASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRSN 93

Query: 64  LHVSPNLESRVRILKKQYNAIAEMLGPACS------------------------------ 123
           + V+ NLESRV+ LKKQY AIA+M+GPACS                              
Sbjct: 94  IQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNARG 153

Query: 124 LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPV 173
           L N+PF  F DL ++FG+D+ATG   +   +MAS  A D  EDD++ +     + +P  +
Sbjct: 154 LLNKPFAYFYDLEIVFGRDKATGGRCKPFVEMASQTARDTEEDDMDINLEDFDIPNPHGL 213

[Close]

BLAST of Tan0011337 vs. NCBI nr
Match: XP_031741735.1 (uncharacterized protein At2g29880-like [Cucumis sativus])

HSP 1 Score: 146.4 bits (368), Expect = 2.3e-31
Identity = 82/200 (41.00%), Postives = 111/200 (55.50%), Query Frame = 0


Query: 4   SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVD 63
           +S+ SK  KH WT  E+             GGWRA NGTF+PGYL QV+K+MKEK+P  +
Sbjct: 34  ASTNSKATKHRWTTIEE-------------GGWRAYNGTFKPGYLVQVQKLMKEKIPGSN 93

Query: 64  LHVSPNLESRVRILKKQYNAIAEMLGPACS------------------------------ 123
           + V+PNLE RV+ILKKQY AI EM+GP+CS                              
Sbjct: 94  IQVTPNLEPRVKILKKQYTAIVEMMGPSCSRFGWNEKRKCIEAEKFVFDDLVKGHPNARG 153

Query: 124 LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPV 173
           L N+PFP F DL ++FG+DRATG   +TP +M S    D+ EDD++ +     + +P  +
Sbjct: 154 LLNKPFPYFYDLEIVFGRDRATGGRCKTPVEMCSHNTRDIEEDDMDINLEDFDIPNPHGL 213

[Close]

BLAST of Tan0011337 vs. ExPASy TrEMBL
Match: A0A5A7SW62 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00210 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.3e-35
Identity = 88/200 (44.00%), Postives = 113/200 (56.50%), Query Frame = 0


Query: 4   SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVD 63
           +S  SK  KH WT  ED  LV+ LL LV  G WR DNGTF+PGYL QV+K+MKEK+   +
Sbjct: 87  ASINSKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILESN 146

Query: 64  LHVSPNLESRVRILKKQYNAIAEMLGPACS------------------------------ 123
           + V+PNLES V+ILKKQY  IAEM+GP CS                              
Sbjct: 147 IQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNARY 206

Query: 124 LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPV 173
           L N+PFP F DL ++FG+DRATG   +TP +M S  A D  EDD+  +     + +P  +
Sbjct: 207 LLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGSQTARDTEEDDMIINLEDFDIPNPHGL 266

[Close]

BLAST of Tan0011337 vs. ExPASy TrEMBL
Match: A0A5D3DTL0 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00340 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.3e-35
Identity = 88/200 (44.00%), Postives = 113/200 (56.50%), Query Frame = 0


Query: 4   SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVD 63
           +S  SK  KH WT  ED  LV+ LL LV  G WR DNGTF+PGYL QV+K+MKEK+   +
Sbjct: 87  ASINSKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILESN 146

Query: 64  LHVSPNLESRVRILKKQYNAIAEMLGPACS------------------------------ 123
           + V+PNLES V+ILKKQY  IAEM+GP CS                              
Sbjct: 147 IQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNARY 206

Query: 124 LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPV 173
           L N+PFP F DL ++FG+DRATG   +TP +M S  A D  EDD+  +     + +P  +
Sbjct: 207 LLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGSQTARDTEEDDMIINLEDFDIPNPHGL 266

[Close]

BLAST of Tan0011337 vs. ExPASy TrEMBL
Match: A0A5D3BC95 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00380 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 8.6e-32
Identity = 83/200 (41.50%), Postives = 114/200 (57.00%), Query Frame = 0


Query: 4   SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVD 63
           +S+ SK  KH WT  +D  LV+ LL LV  GGWRA+N TF+P YL QV+K+MKEK+P  +
Sbjct: 2   ASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRSN 61

Query: 64  LHVSPNLESRVRILKKQYNAIAEMLGPACS------------------------------ 123
           + V+ NLESRV+ LKKQY AIA+M+GPACS                              
Sbjct: 62  IQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNARG 121

Query: 124 LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPV 173
           L N+PF  F DL ++FG+D+ATG   +   +MAS  A D  EDD++ +     + +P  +
Sbjct: 122 LLNKPFAYFYDLEIVFGRDKATGGRCKPFVEMASQTARDTEEDDMDINLEDFDIPNPHGL 181

[Close]

BLAST of Tan0011337 vs. ExPASy TrEMBL
Match: A0A1S3C252 (uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 8.6e-32
Identity = 83/200 (41.50%), Postives = 114/200 (57.00%), Query Frame = 0


Query: 4   SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVD 63
           +S+ SK  KH WT  +D  LV+ LL LV  GGWRA+N TF+P YL QV+K+MKEK+P  +
Sbjct: 34  ASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRSN 93

Query: 64  LHVSPNLESRVRILKKQYNAIAEMLGPACS------------------------------ 123
           + V+ NLESRV+ LKKQY AIA+M+GPACS                              
Sbjct: 94  IQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNARG 153

Query: 124 LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPV 173
           L N+PF  F DL ++FG+D+ATG   +   +MAS  A D  EDD++ +     + +P  +
Sbjct: 154 LLNKPFAYFYDLEIVFGRDKATGGRCKPFVEMASQTARDTEEDDMDINLEDFDIPNPHGL 213

[Close]

BLAST of Tan0011337 vs. ExPASy TrEMBL
Match: A0A5A7U3R2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G001010 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.8e-30
Identity = 74/169 (43.79%), Postives = 105/169 (62.13%), Query Frame = 0


Query: 4   SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVD 63
           +S+  K  +H WT  ED  LV+ LL L+  GGWR DNGTF+  YL Q++K+MKEK+   +
Sbjct: 329 TSTNLKATQHRWTTIEDEALVECLLQLMEEGGWRVDNGTFKLRYLVQIQKLMKEKIHGSN 388

Query: 64  LHVSPNLESRVRILKKQYNAIAEMLGPACSLRNRPFPLFNDLAVIFGKDRATGAGAQTPS 123
           + V+PNLE R++ILKKQY     +     SL N+PFP F DL V+FG+DRATG   +T  
Sbjct: 389 IQVTPNLELRIKILKKQYTGHPNVR----SLLNKPFPYFYDLEVVFGRDRATGGRCKTSV 448

Query: 124 DMASDAATDL-EDDLNPDFPGSFLRDPPPVDVSMGEDTSATPTSRTQEV 172
           +M S    D  EDD++ +     + +P  +++  GED  +TPTS   +V
Sbjct: 449 EMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDV 493

The following BLAST results are available for this feature:

BLAST of Tan0011337 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0011337 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033487.1	2.7e-35	44.00	uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa]	[more]
TYK26842.1	2.7e-35	44.00	uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa]	[more]
TYJ96933.1	1.8e-31	41.50	retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_008455678.1	1.8e-31	41.50	PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]	[more]
XP_031741735.1	2.3e-31	41.00	uncharacterized protein At2g29880-like [Cucumis sativus]	[more]

BLAST of Tan0011337 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SW62	1.3e-35	44.00	Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3DTL0	1.3e-35	44.00	Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3BC95	8.6e-32	41.50	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C252	8.6e-32	41.50	uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 P...	[more]
A0A5A7U3R2	2.8e-30	43.79	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Tan0011337 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..172
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 4..133
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 4..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0011337.1	Tan0011337.1	mRNA