Csor.00g280560 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSstart_codonsinglepolypeptidestop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTCCCCGACACTGATAACCCCATCTACTTCCAAATCTCAGCCTCTCATCATCCCTCTCAAACCCAAATCCTCCATTACCGCCGCTGCAACAACCACCACCACCCACCATTACTCCCGCCGCCGCGAGTTCCTGTCTTTGACGGCCTCTGTTCTAGCGCCGTCGTGGGTTCTGTTCCCTCCAGCTCCGGCACTAGCGTCGTCTGACGAGGAGTACGTGAAGGACACAACCGAGGTGATAGGAAAGGTGAGAACGACGATCACCATGGATAAAAACGACCCGAATGTGGCGGCGGCGGTGGCGGAGCTTCGAGAAAGTTCCAATTCTTGGGTGGCTAAGTACAGGAAGGAGAAGTCGCTGTTGGGACGAGCTTCGTTTAGGGATATGTATTCGGCTCTGAATGCGGTTTCCGGACATTACATTAGCTTTGGGCCGACGGCGCCGATTCCGGCCAAGAGGAAGGCCAGAATCTTGGAAGAGATGGCCACCGCCGAGAAGGCTCTGTTAAGAGGGAGATGA ATGGCTTCCCCGACACTGATAACCCCATCTACTTCCAAATCTCAGCCTCTCATCATCCCTCTCAAACCCAAATCCTCCATTACCGCCGCTGCAACAACCACCACCACCCACCATTACTCCCGCCGCCGCGAGTTCCTGTCTTTGACGGCCTCTGTTCTAGCGCCGTCGTGGGTTCTGTTCCCTCCAGCTCCGGCACTAGCGTCGTCTGACGAGGAGTACGTGAAGGACACAACCGAGGTGATAGGAAAGGTGAGAACGACGATCACCATGGATAAAAACGACCCGAATGTGGCGGCGGCGGTGGCGGAGCTTCGAGAAAGTTCCAATTCTTGGGTGGCTAAGTACAGGAAGGAGAAGTCGCTGTTGGGACGAGCTTCGTTTAGGGATATGTATTCGGCTCTGAATGCGGTTTCCGGACATTACATTAGCTTTGGGCCGACGGCGCCGATTCCGGCCAAGAGGAAGGCCAGAATCTTGGAAGAGATGGCCACCGCCGAGAAGGCTCTGTTAAGAGGGAGATGA ATGGCTTCCCCGACACTGATAACCCCATCTACTTCCAAATCTCAGCCTCTCATCATCCCTCTCAAACCCAAATCCTCCATTACCGCCGCTGCAACAACCACCACCACCCACCATTACTCCCGCCGCCGCGAGTTCCTGTCTTTGACGGCCTCTGTTCTAGCGCCGTCGTGGGTTCTGTTCCCTCCAGCTCCGGCACTAGCGTCGTCTGACGAGGAGTACGTGAAGGACACAACCGAGGTGATAGGAAAGGTGAGAACGACGATCACCATGGATAAAAACGACCCGAATGTGGCGGCGGCGGTGGCGGAGCTTCGAGAAAGTTCCAATTCTTGGGTGGCTAAGTACAGGAAGGAGAAGTCGCTGTTGGGACGAGCTTCGTTTAGGGATATGTATTCGGCTCTGAATGCGGTTTCCGGACATTACATTAGCTTTGGGCCGACGGCGCCGATTCCGGCCAAGAGGAAGGCCAGAATCTTGGAAGAGATGGCCACCGCCGAGAAGGCTCTGTTAAGAGGGAGATGA MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR Homology
BLAST of Csor.00g280560 vs. ExPASy Swiss-Prot
Match: Q9LR64 (Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-1 PE=1 SV=1) HSP 1 Score: 193.0 bits (489), Expect = 2.9e-48 Identity = 110/174 (63.22%), Postives = 132/174 (75.86%), Query Frame = 0
BLAST of Csor.00g280560 vs. ExPASy Swiss-Prot
Match: Q9ZVZ9 (Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-2 PE=1 SV=1) HSP 1 Score: 48.1 bits (113), Expect = 1.1e-04 Identity = 30/115 (26.09%), Postives = 61/115 (53.04%), Query Frame = 0
BLAST of Csor.00g280560 vs. NCBI nr
Match: KAG6572353.1 (Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011964.1 Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 328 bits (842), Expect = 3.81e-113 Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0
BLAST of Csor.00g280560 vs. NCBI nr
Match: XP_023554625.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 328 bits (841), Expect = 5.41e-113 Identity = 172/173 (99.42%), Postives = 173/173 (100.00%), Query Frame = 0
BLAST of Csor.00g280560 vs. NCBI nr
Match: XP_022952622.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata] >XP_022969270.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 321 bits (822), Expect = 4.12e-110 Identity = 171/173 (98.84%), Postives = 172/173 (99.42%), Query Frame = 0
BLAST of Csor.00g280560 vs. NCBI nr
Match: XP_038887363.1 (photosystem II repair protein PSB27-H1, chloroplastic [Benincasa hispida]) HSP 1 Score: 279 bits (714), Expect = 1.08e-93 Identity = 151/173 (87.28%), Postives = 159/173 (91.91%), Query Frame = 0
BLAST of Csor.00g280560 vs. NCBI nr
Match: XP_004136817.1 (photosystem II repair protein PSB27-H1, chloroplastic [Cucumis sativus] >KGN43600.1 hypothetical protein Csa_020553 [Cucumis sativus]) HSP 1 Score: 274 bits (701), Expect = 1.03e-91 Identity = 149/173 (86.13%), Postives = 158/173 (91.33%), Query Frame = 0
BLAST of Csor.00g280560 vs. ExPASy TrEMBL
Match: A0A6J1HZH1 (photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111468326 PE=3 SV=1) HSP 1 Score: 321 bits (822), Expect = 2.00e-110 Identity = 171/173 (98.84%), Postives = 172/173 (99.42%), Query Frame = 0
BLAST of Csor.00g280560 vs. ExPASy TrEMBL
Match: A0A6J1GKW7 (photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111455256 PE=3 SV=1) HSP 1 Score: 321 bits (822), Expect = 2.00e-110 Identity = 171/173 (98.84%), Postives = 172/173 (99.42%), Query Frame = 0
BLAST of Csor.00g280560 vs. ExPASy TrEMBL
Match: A0A0A0K1S2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047350 PE=3 SV=1) HSP 1 Score: 274 bits (701), Expect = 4.99e-92 Identity = 149/173 (86.13%), Postives = 158/173 (91.33%), Query Frame = 0
BLAST of Csor.00g280560 vs. ExPASy TrEMBL
Match: A0A5A7SR30 (Photosystem II repair protein PSB27-H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003550 PE=3 SV=1) HSP 1 Score: 274 bits (700), Expect = 7.09e-92 Identity = 148/173 (85.55%), Postives = 159/173 (91.91%), Query Frame = 0
BLAST of Csor.00g280560 vs. ExPASy TrEMBL
Match: A0A1S3C1X2 (photosystem II repair protein PSB27-H1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495525 PE=3 SV=1) HSP 1 Score: 274 bits (700), Expect = 7.09e-92 Identity = 148/173 (85.55%), Postives = 159/173 (91.91%), Query Frame = 0
BLAST of Csor.00g280560 vs. TAIR 10
Match: AT1G03600.1 (photosystem II family protein ) HSP 1 Score: 193.0 bits (489), Expect = 2.0e-49 Identity = 110/174 (63.22%), Postives = 132/174 (75.86%), Query Frame = 0
BLAST of Csor.00g280560 vs. TAIR 10
Match: AT1G05385.1 (photosystem II 11 kDa protein-related ) HSP 1 Score: 48.1 bits (113), Expect = 8.1e-06 Identity = 30/115 (26.09%), Postives = 61/115 (53.04%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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