Carg21212-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg21212-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S ribosomal protein L5-like
Location	Carg_Chr18: 7077291 .. 7080573 (-)
Sequence length	1134
RNA-Seq Expression	Carg21212-RA
Synteny	Carg21212-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCTCCATTTTTGGAGCTAACCGCAAGCATGTTCGTTGCATAATGCGATGTCTATCGATACTTCACAGGTTATTTTCCCTTATCATTTGGATTAGAAATGGTTAATATTTTATTTTAAAAATACTACAAAGTTTCATTACTACGCCTTGACTTCTTAAAAGTTTTCAAAAATATTCTTACTACGGTAAAAAATACATTTGAAATTTTAATAGTAATATTAAAACCTTTTACCAAATATAATTGTCATCAATATATGAACGAAAATCGTCTGTCAATACTTCACAGGTTATTTTCAAATTTTTTTACGTTACTTTTGAAAGGTTATGAATGTTATTGAAATGTGTTTTTTTTAGAAGGTGATTTCGAAGTTTTTATAAAAAAATTATGGGTATTAATGAAAATTTAAAAAATTTAATGATATTTTTTATTTTTCTTTTTTTTTAACGTTTAAGGGTATTTTTGGAATAAATTATTAACCATTTTTTAAAATTTTTAAAAATTTATTTTTTAAATGGATATATATATATATATATTTTATTGCTTTACACTGATTATAGGAAAGATGGGCCCGGCCCACTTTGAATAAGAAGCTGGAGTCGTCGGCCCATATGCAAGCAATCTAGGGTTTTATGCCCAACAAGAAAAAAGAAAACCTAGGGTTTATTATATAAAGGGATTCTGCCCTTTCTCTTGTTTTCCGCCACTTCTCTTTCGGGTTCCTGCTCCGCTCGCGGCACCAAATCTACAATGGTGAGAGCTCCATCCCTTTCCCTTGCGCTTTCGTTTGTTCTTGTTTCTATTGACTGGTTATACTATAGAAGTTCATGTAATCATACTTTTACTGCGTTTTCCGACTTCTCGTTCATCTTCGCAATCCGTTGTGTGGTGGAATTTATGTCATATTTTGTTAGGAACTTGTCTGTAATTCGTAGGTTTCATGCTATGTATTTGTAGGGATCTTTATTTTAAGCTATGTTGGTGGTCGGACTGTTTTTTTTAGCTTCGTTCCTAGCTTTTAGTTTGAGCATTCCGCCGCTCTTAATTATCATACATATCTTTGCTCTACAGATCAGAGATAACTTTATAGTATTTTATGGTTTTGACGGTCATTGATTCATTAAATAGTAATGCGAGGTCATATTTTTTATGTCGTGATGTGTTTACAATGTTGGGGGTAGTTATATGGTGGGTTATTTATTGTAGGCTTTTGCCAAAGCTCAGAAGACGAAGGCCTACTTCAAACGTTATCAAGTCAAGTTCAAGAGAAGGAGAGGTATTTATTCCCTATATAAATAATGTCACAATGTTATTTATTCTTTTCTAGATTTCTGATTGTTGTTTCTGAATATTCACAGAGGGAAAGACTGACTACCGAGCTAGAATTCGTCTTATTAACCAGGACAAGAACAAGTACAACACTCCCAAGTATCGCATTGTTGTCCGATTTGTATCCTATGAAAGATCTGAGTTTGAATAGTTTGTAGAAGTTTACATGTTTTGGGTGCTGAAGAGCATGAGTAATTGTTTCTCTTTTAGCTATCAAATGCAAGACTTTTTGTTGGGTTTTATTTTTAGATTACTTTCAGTTTTACATCTATTTTTCATGGATTTTGAGATGTGTGTCCTTGACATCATTCAATAGTCGAACAAAGATATCACAGCTCAGATAATTTCTGCTAGCATTGCTGGGGACTTGGTCCTTGCTTCAGCTTATTCTCATGAGCTTCCTCGTTACGGGCTGGAAGTTGGTCTCACCAACTATGCTGCAGGTATGCTTTCAATCTTGTCACTCTTTCTTGTATGTCCGTTCATTTATAATATTCCTATTAACATTTTCAATGACTTGATTAACAACTGTTTTAAAATTGTTTAGCATATTGCACTGGGCTTCTCTTGGCTCGACGAGTTTTGAAACAGCTTGAGATGGATGATGAATATGAGGGCAATGTGGAGGTACATCTATTCTTAACTATTTCCTCTACCCCTATCTATATTATATTTTTAATTTTATTAACACTATGATGTTGCACTCTTAGGCTACTGGTGAAGATTACTCTGTTGAGCCTGCTGATACCAGAAGGCCATTCCGTGCTTTACTTGATGTCGGTCTTCTTAAAACTACAACTGGAAACCGTGTTTTTGGTGCTCTTAAGGTACTCAGTTAGCAACCGGATATTCAATTTCTAGTTCTTTAAAACTTAATTTCTCTGTCAGCTCCTGTAATCAAAGTATCCTATGATGTTATCTTAAATCAACATTTTCAGATACTAATCTCAAGGAAAGCTAGTTTATTCTGATACTGACAATCTCATTGTTTGATATAAGTCGTCGAGTACACGTTTTCGAACAATCTCATTGTTCTGTACTTCTTTGGTTGAATGTTGTCATGCTATGGCTGGTTGGAATTGTTAATATGATATATTGGCCGTGTAAAAACCTGCAATGAATTTCAATTTGTAAAACACAGGGAGCTTTAGATGGTGGATTGGACATCCCTCACAGCGATAAGAGATTTGCTGGGTTTTCCAAGGATAGCAAGCAGCTTGATGCTGATGTTCATAGGAAGTACATTTATGGTGGACACGTTGCGGCGTACATGCGGGTACGACCGTGCTGTTTATTTGTTCTTATGATATGCTATTTGTATCCTTCACGTTTGATAACTTTTTATATATGGCTTCATCAGACCTTGATGGAAGATGAACCAGAGAAGTACCAAACCCACTTCAGCGAATACATCAAGAAGGGCATTGAGGCTGATGACATCGAGGGTTTATACAAGAAAGTTCATGCCGCCATTCGGGCAGACCCATCAGTGAAGAAATCCGACAAGCCCCAACCCAAGGCACACAAGAGGTAGAAACGAAGCTCGAGCTTTTGTCGTCGAGCGTAAAATATCTTTCCTATGTGAACTTTCTTTGTTGCGGGCATTGTTTATTAACATTCCCCTGTTGTTGTTGGTTGAAAATTACAGGTACAACTTGAAGAAGCTGACATACGACGAAAGAAAAGCTCGCTTGGTGGAACGTTTGAACGCTCTCAACTCTGCAGCTAATGCTGACGACGACGATGACGATGAGGATGACGAGTGAAAGATGAAAATTAGTTGATGTGGGCATGGAAGGATTTTAATGTAGTAGTTCTGCTATTTATTATTTTAAGTTTCGTTCTTTGGTCGAAAACTTTTCTCATCTTGGAGTGTTCTGTTACTTAGAAAATCATACTTTTGGTCGCCTCGACTTTGTCACTTTTGATACTCATTTTCTCTTCCAATGCAA

mRNA sequence

ATGAATTCTCCATTTTTGGAGCTAACCGCAAGCATGTTCGCTTTTGCCAAAGCTCAGAAGACGAAGGCCTACTTCAAACGTTATCAAGTCAAGTTCAAGAGAAGGAGAGAGGGAAAGACTGACTACCGAGCTAGAATTCGTCTTATTAACCAGGACAAGAACAAGTACAACACTCCCAAGTATCGCATTGTTGTCCGATTTTCGAACAAAGATATCACAGCTCAGATAATTTCTGCTAGCATTGCTGGGGACTTGGTCCTTGCTTCAGCTTATTCTCATGAGCTTCCTCGTTACGGGCTGGAAGTTGGTCTCACCAACTATGCTGCAGCATATTGCACTGGGCTTCTCTTGGCTCGACGAGTTTTGAAACAGCTTGAGATGGATGATGAATATGAGGGCAATGTGGAGGCTACTGGTGAAGATTACTCTGTTGAGCCTGCTGATACCAGAAGGCCATTCCGTGCTTTACTTGATGTCGGTCTTCTTAAAACTACAACTGGAAACCGTGTTTTTGGTGCTCTTAAGGGAGCTTTAGATGGTGGATTGGACATCCCTCACAGCGATAAGAGATTTGCTGGGTTTTCCAAGGATAGCAAGCAGCTTGATGCTGATGTTCATAGGAAGTACATTTATGGTGGACACGTTGCGGCGTACATGCGGACCTTGATGGAAGATGAACCAGAGAAGTACCAAACCCACTTCAGCGAATACATCAAGAAGGGCATTGAGGCTGATGACATCGAGGGTTTATACAAGAAAGTTCATGCCGCCATTCGGGCAGACCCATCAGTGAAGAAATCCGACAAGCCCCAACCCAAGGCACACAAGAGGTACAACTTGAAGAAGCTGACATACGACGAAAGAAAAGCTCGCTTGGTGGAACGTTTGAACGCTCTCAACTCTGCAGCTAATGCTGACGACGACGATGACGATGAGGATGACGAGTGAAAGATGAAAATTAGTTGATGTGGGCATGGAAGGATTTTAATGTAGTAGTTCTGCTATTTATTATTTTAAGTTTCGTTCTTTGGTCGAAAACTTTTCTCATCTTGGAGTGTTCTGTTACTTAGAAAATCATACTTTTGGTCGCCTCGACTTTGTCACTTTTGATACTCATTTTCTCTTCCAATGCAA

Coding sequence (CDS)

ATGAATTCTCCATTTTTGGAGCTAACCGCAAGCATGTTCGCTTTTGCCAAAGCTCAGAAGACGAAGGCCTACTTCAAACGTTATCAAGTCAAGTTCAAGAGAAGGAGAGAGGGAAAGACTGACTACCGAGCTAGAATTCGTCTTATTAACCAGGACAAGAACAAGTACAACACTCCCAAGTATCGCATTGTTGTCCGATTTTCGAACAAAGATATCACAGCTCAGATAATTTCTGCTAGCATTGCTGGGGACTTGGTCCTTGCTTCAGCTTATTCTCATGAGCTTCCTCGTTACGGGCTGGAAGTTGGTCTCACCAACTATGCTGCAGCATATTGCACTGGGCTTCTCTTGGCTCGACGAGTTTTGAAACAGCTTGAGATGGATGATGAATATGAGGGCAATGTGGAGGCTACTGGTGAAGATTACTCTGTTGAGCCTGCTGATACCAGAAGGCCATTCCGTGCTTTACTTGATGTCGGTCTTCTTAAAACTACAACTGGAAACCGTGTTTTTGGTGCTCTTAAGGGAGCTTTAGATGGTGGATTGGACATCCCTCACAGCGATAAGAGATTTGCTGGGTTTTCCAAGGATAGCAAGCAGCTTGATGCTGATGTTCATAGGAAGTACATTTATGGTGGACACGTTGCGGCGTACATGCGGACCTTGATGGAAGATGAACCAGAGAAGTACCAAACCCACTTCAGCGAATACATCAAGAAGGGCATTGAGGCTGATGACATCGAGGGTTTATACAAGAAAGTTCATGCCGCCATTCGGGCAGACCCATCAGTGAAGAAATCCGACAAGCCCCAACCCAAGGCACACAAGAGGTACAACTTGAAGAAGCTGACATACGACGAAAGAAAAGCTCGCTTGGTGGAACGTTTGAACGCTCTCAACTCTGCAGCTAATGCTGACGACGACGATGACGATGAGGATGACGAGTGA

Protein sequence

MNSPFLELTASMFAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRIVVRFSNKDITAQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSDKRFAGFSKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKKGIEADDIEGLYKKVHAAIRADPSVKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAANADDDDDDEDDE

Homology

[Close]

BLAST of Carg21212-RA vs. NCBI nr
Match: KAG7012684.1 (60S ribosomal protein L5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 611.7 bits (1576), Expect = 3.6e-171
Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0


Query: 1   MNSPFLELTASMFAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPK 60
           MNSPFLELTASMFAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPK
Sbjct: 1   MNSPFLELTASMFAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPK 60

Query: 61  YRIVVRFSNKDITAQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARR 120
           YRIVVRFSNKDITAQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARR
Sbjct: 61  YRIVVRFSNKDITAQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARR 120

Query: 121 VLKQLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDG 180
           VLKQLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDG
Sbjct: 121 VLKQLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDG 180

Query: 181 GLDIPHSDKRFAGFSKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKK 240
           GLDIPHSDKRFAGFSKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKK
Sbjct: 181 GLDIPHSDKRFAGFSKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKK 240

Query: 241 GIEADDIEGLYKKVHAAIRADPSVKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALN 300
           GIEADDIEGLYKKVHAAIRADPSVKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALN
Sbjct: 241 GIEADDIEGLYKKVHAAIRADPSVKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALN 300

Query: 301 SAANADDDDDDEDDE 316
           SAANADDDDDDEDDE
Sbjct: 301 SAANADDDDDDEDDE 315

[Close]

BLAST of Carg21212-RA vs. NCBI nr
Match: XP_023541888.1 (60S ribosomal protein L5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 584.7 bits (1506), Expect = 4.7e-163
Identity = 301/302 (99.67%), Postives = 301/302 (99.67%), Query Frame = 0


Query: 14  AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRIVVRFSNKDIT 73
           AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRIVVRFSNKDIT
Sbjct: 2   AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRIVVRFSNKDIT 61

Query: 74  AQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDDEYEG 133
           AQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDDEYEG
Sbjct: 62  AQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDDEYEG 121

Query: 134 NVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSDKRFAG 193
           NVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSDKRFAG
Sbjct: 122 NVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSDKRFAG 181

Query: 194 FSKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKKGIEADDIEGLYKK 253
           FSKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKKGIEADDIEGLYKK
Sbjct: 182 FSKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKKGIEADDIEGLYKK 241

Query: 254 VHAAIRADPSVKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAANADDDDDDED 313
           VHAAIRADP VKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAANADDDDDDED
Sbjct: 242 VHAAIRADPLVKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAANADDDDDDED 301

Query: 314 DE 316
           DE
Sbjct: 302 DE 303

[Close]

BLAST of Carg21212-RA vs. NCBI nr
Match: KAG6573600.1 (60S ribosomal protein L5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 584.3 bits (1505), Expect = 6.1e-163
Identity = 300/302 (99.34%), Postives = 302/302 (100.00%), Query Frame = 0


Query: 14  AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRIVVRFSNKDIT 73
           AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRIVVRFSNKDIT
Sbjct: 2   AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRIVVRFSNKDIT 61

Query: 74  AQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDDEYEG 133
           AQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDDEYEG
Sbjct: 62  AQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDDEYEG 121

Query: 134 NVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSDKRFAG 193
           NVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSDKRFAG
Sbjct: 122 NVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSDKRFAG 181

Query: 194 FSKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKKGIEADDIEGLYKK 253
           FSKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKKGIEADDIEGLYKK
Sbjct: 182 FSKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKKGIEADDIEGLYKK 241

Query: 254 VHAAIRADPSVKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAANADDDDDDED 313
           VHAAIRADPSVKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAANADDDDDDED
Sbjct: 242 VHAAIRADPSVKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAANADDDDDDED 301

Query: 314 DE 316
           ++
Sbjct: 302 ED 303

[Close]

BLAST of Carg21212-RA vs. NCBI nr
Match: XP_022945687.1 (60S ribosomal protein L5-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 583.2 bits (1502), Expect = 1.4e-162
Identity = 299/302 (99.01%), Postives = 302/302 (100.00%), Query Frame = 0


Query: 14  AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRIVVRFSNKDIT 73
           AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRIVVRFSNKDIT
Sbjct: 2   AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRIVVRFSNKDIT 61

Query: 74  AQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDDEYEG 133
           AQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDDEYEG
Sbjct: 62  AQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDDEYEG 121

Query: 134 NVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSDKRFAG 193
           NVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSDKRFAG
Sbjct: 122 NVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSDKRFAG 181

Query: 194 FSKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKKGIEADDIEGLYKK 253
           FSKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKKGIEADDIEGLYKK
Sbjct: 182 FSKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKKGIEADDIEGLYKK 241

Query: 254 VHAAIRADPSVKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAANADDDDDDED 313
           VHAAIRADPSVKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAANADDDDDD+D
Sbjct: 242 VHAAIRADPSVKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAANADDDDDDDD 301

Query: 314 DE 316
           ++
Sbjct: 302 ED 303

[Close]

BLAST of Carg21212-RA vs. NCBI nr
Match: XP_022966860.1 (60S ribosomal protein L5-like [Cucurbita maxima])

HSP 1 Score: 578.2 bits (1489), Expect = 4.4e-161
Identity = 297/302 (98.34%), Postives = 300/302 (99.34%), Query Frame = 0


Query: 14  AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRIVVRFSNKDIT 73
           AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRIVVRFSNKDIT
Sbjct: 2   AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRIVVRFSNKDIT 61

Query: 74  AQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDDEYEG 133
           AQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDDEYEG
Sbjct: 62  AQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDDEYEG 121

Query: 134 NVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSDKRFAG 193
           NVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSDKRFAG
Sbjct: 122 NVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSDKRFAG 181

Query: 194 FSKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKKGIEADDIEGLYKK 253
           FSKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKKGIEAD IEGLYKK
Sbjct: 182 FSKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKKGIEADGIEGLYKK 241

Query: 254 VHAAIRADPSVKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAANADDDDDDED 313
           VHAAIRADPSVKKSDKP PKAHKRYNLKKLTYDERKARLVERLNALNSAANADDDDDD++
Sbjct: 242 VHAAIRADPSVKKSDKPPPKAHKRYNLKKLTYDERKARLVERLNALNSAANADDDDDDDE 301

Query: 314 DE 316
           D+
Sbjct: 302 DD 303

[Close]

BLAST of Carg21212-RA vs. ExPASy Swiss-Prot
Match: Q6UNT2 (60S ribosomal protein L5 OS=Cucumis sativus OX=3659 GN=RPL5 PE=2 SV=1)

HSP 1 Score: 543.1 bits (1398), Expect = 2.1e-153
Identity = 275/301 (91.36%), Postives = 292/301 (97.01%), Query Frame = 0


Query: 14  AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRIVVRFSNKDIT 73
           AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYR VVR SNKDIT
Sbjct: 2   AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRTSNKDIT 61

Query: 74  AQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDDEYEG 133
           AQIISASIAGDLVLASAYSHELP+YGLEVGLTNYAAAYCTGLLLARRVLK LEMD EYEG
Sbjct: 62  AQIISASIAGDLVLASAYSHELPQYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEG 121

Query: 134 NVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSDKRFAG 193
           NVEATGEDYSVEPADTRRPFRALLDVGL++TTTGNRVFGALKGALDGGLDIPHSDKRFAG
Sbjct: 122 NVEATGEDYSVEPADTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAG 181

Query: 194 FSKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKKGIEADDIEGLYKK 253
           ++K+ +QLD +VHRKYI+GGHVAAYMRTLMEDEPEKYQ+HFSEYIKKGIEAD++EGLYKK
Sbjct: 182 YAKNGQQLDVEVHRKYIFGGHVAAYMRTLMEDEPEKYQSHFSEYIKKGIEADELEGLYKK 241

Query: 254 VHAAIRADPSVKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAANADDDDDDED 313
           VHAAIRA+P  KKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAA+ DDDDD++D
Sbjct: 242 VHAAIRANPIAKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAADGDDDDDEDD 301

Query: 314 D 315
           +
Sbjct: 302 E 302

[Close]

BLAST of Carg21212-RA vs. ExPASy Swiss-Prot
Match: A2WXX3 (60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica OX=39946 GN=RPL5A PE=3 SV=2)

HSP 1 Score: 496.1 bits (1276), Expect = 2.9e-139
Identity = 246/304 (80.92%), Postives = 276/304 (90.79%), Query Frame = 0


Query: 12  MFAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRIVVRFSNKD 71
           M  F K QKT AY+KR+QVKFKRRR+GKTDYRARIRL NQDKNKYNTPKYR VVRF+NKD
Sbjct: 1   MGGFVKTQKTNAYYKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKD 60

Query: 72  ITAQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDDEY 131
           ITAQI+ A+IAGD+V+A+AYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLK   +D EY
Sbjct: 61  ITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEY 120

Query: 132 EGNVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSDKRF 191
           EGN+EATGEDY VEPAD RRPFRALLDVGL++TTTGNRVFGALKGALDGGLDIPHSDKRF
Sbjct: 121 EGNIEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRF 180

Query: 192 AGFSKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKKGIEADDIEGLY 251
           AGF KD KQLD+D+HRKYIYGGHVA YMR++ E+EPEK+Q HFSEY+KKGI+AD +E LY
Sbjct: 181 AGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALY 240

Query: 252 KKVHAAIRADPSVKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAANADDDDDD 311
           KKVHAAIRADP++ KS K +P  HKRYNLKKLTY++RKA LVERLNALNS+A ADDDD++
Sbjct: 241 KKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDDEE 300

Query: 312 EDDE 316
           EDDE
Sbjct: 301 EDDE 304

[Close]

BLAST of Carg21212-RA vs. ExPASy Swiss-Prot
Match: Q8L4L4 (60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL5B PE=2 SV=2)

HSP 1 Score: 495.0 bits (1273), Expect = 6.4e-139
Identity = 247/304 (81.25%), Postives = 275/304 (90.46%), Query Frame = 0


Query: 12  MFAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRIVVRFSNKD 71
           M  F K QKT AYFKR+QVKFKRRR+GKTDYRARIRL NQDKNKYNTPKYR VVRF+NKD
Sbjct: 1   MGGFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKD 60

Query: 72  ITAQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDDEY 131
           ITAQI+ A+IAGD+V+A+AYSHELPRYGLEVGLTNYAAAYCTGLLLARRVL    +D EY
Sbjct: 61  ITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEY 120

Query: 132 EGNVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSDKRF 191
           EGNVEATGEDY VEPAD RRPFRALLDVGL++TTTGNRVFGALKGALDGGLDIPHSDKRF
Sbjct: 121 EGNVEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRF 180

Query: 192 AGFSKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKKGIEADDIEGLY 251
           AGF KD KQLD+D+HRKYIYGGHVA YMR++ E+EPEK+Q HFSEY+KKGI+AD +E LY
Sbjct: 181 AGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLY 240

Query: 252 KKVHAAIRADPSVKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAANADDDDDD 311
           KKVHAAIRADP++ KS K +P  HKRYNLKKLTY++RKA LVERLNALNS+A ADDDD++
Sbjct: 241 KKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDDEE 300

Query: 312 EDDE 316
           EDDE
Sbjct: 301 EDDE 304

[Close]

BLAST of Carg21212-RA vs. ExPASy Swiss-Prot
Match: Q0JGY1 (60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL5A PE=2 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 8.4e-139
Identity = 246/304 (80.92%), Postives = 275/304 (90.46%), Query Frame = 0


Query: 12  MFAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRIVVRFSNKD 71
           M  F K QKT AY KR+QVKFKRRR+GKTDYRARIRL NQDKNKYNTPKYR VVRF+NKD
Sbjct: 1   MGGFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKD 60

Query: 72  ITAQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDDEY 131
           ITAQI+ A+IAGD+V+A+AYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLK   +D EY
Sbjct: 61  ITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEY 120

Query: 132 EGNVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSDKRF 191
           EGN+EATGEDY VEPAD RRPFRALLDVGL++TTTGNRVFGALKGALDGGLDIPHSDKRF
Sbjct: 121 EGNIEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRF 180

Query: 192 AGFSKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKKGIEADDIEGLY 251
           AGF KD KQLD+D+HRKYIYGGHVA YMR++ E+EPEK+Q HFSEY+KKGI+AD +E LY
Sbjct: 181 AGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALY 240

Query: 252 KKVHAAIRADPSVKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAANADDDDDD 311
           KKVHAAIRADP++ KS K +P  HKRYNLKKLTY++RKA LVERLNALNS+A ADDDD++
Sbjct: 241 KKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDDEE 300

Query: 312 EDDE 316
           EDDE
Sbjct: 301 EDDE 304

[Close]

BLAST of Carg21212-RA vs. ExPASy Swiss-Prot
Match: Q8LBI1 (60S ribosomal protein L5-1 OS=Arabidopsis thaliana OX=3702 GN=RPL5A PE=1 SV=2)

HSP 1 Score: 487.3 bits (1253), Expect = 1.3e-136
Identity = 242/299 (80.94%), Postives = 271/299 (90.64%), Query Frame = 0


Query: 15  FAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRIVVRFSNKDITA 74
           F K+ K+ AYFKRYQVKF+RRR+GKTDYRARIRLINQDKNKYNTPKYR VVRF+NKDI A
Sbjct: 3   FVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVA 62

Query: 75  QIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDDEYEGN 134
           QI+SASIAGD+V ASAY+HELP+YGL VGLTNYAAAYCTGLLLARRVLK LEMDDEYEGN
Sbjct: 63  QIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGN 122

Query: 135 VEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 194
           VEATGED+SVEP D+RRPFRALLDVGL++TTTGNRVFGALKGALDGGLDIPHSDKRFAGF
Sbjct: 123 VEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 182

Query: 195 SKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKKGIEADDIEGLYKKV 254
            K++KQLDA++HR YIYGGHV+ YM+ L EDEPEK QTHFS YIKKG+EA+ IE LYKKV
Sbjct: 183 HKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEELYKKV 242

Query: 255 HAAIRADPSVKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAANADDDDDDED 314
           HAAIRADP+ KK+ KP PK HKRYNLKKLTY+ERK +L+ER+ ALN A   DDD+DDE+
Sbjct: 243 HAAIRADPNPKKTVKPAPKQHKRYNLKKLTYEERKNKLIERVKALNGAGGDDDDEDDEE 301

[Close]

BLAST of Carg21212-RA vs. ExPASy TrEMBL
Match: A0A6J1G1M2 (60S ribosomal protein L5-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111449844 PE=3 SV=1)

HSP 1 Score: 583.2 bits (1502), Expect = 6.6e-163
Identity = 299/302 (99.01%), Postives = 302/302 (100.00%), Query Frame = 0


Query: 14  AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRIVVRFSNKDIT 73
           AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRIVVRFSNKDIT
Sbjct: 2   AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRIVVRFSNKDIT 61

Query: 74  AQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDDEYEG 133
           AQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDDEYEG
Sbjct: 62  AQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDDEYEG 121

Query: 134 NVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSDKRFAG 193
           NVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSDKRFAG
Sbjct: 122 NVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSDKRFAG 181

Query: 194 FSKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKKGIEADDIEGLYKK 253
           FSKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKKGIEADDIEGLYKK
Sbjct: 182 FSKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKKGIEADDIEGLYKK 241

Query: 254 VHAAIRADPSVKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAANADDDDDDED 313
           VHAAIRADPSVKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAANADDDDDD+D
Sbjct: 242 VHAAIRADPSVKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAANADDDDDDDD 301

Query: 314 DE 316
           ++
Sbjct: 302 ED 303

[Close]

BLAST of Carg21212-RA vs. ExPASy TrEMBL
Match: A0A6J1HSR8 (60S ribosomal protein L5-like OS=Cucurbita maxima OX=3661 GN=LOC111466439 PE=3 SV=1)

HSP 1 Score: 578.2 bits (1489), Expect = 2.1e-161
Identity = 297/302 (98.34%), Postives = 300/302 (99.34%), Query Frame = 0


Query: 14  AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRIVVRFSNKDIT 73
           AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRIVVRFSNKDIT
Sbjct: 2   AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRIVVRFSNKDIT 61

Query: 74  AQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDDEYEG 133
           AQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDDEYEG
Sbjct: 62  AQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDDEYEG 121

Query: 134 NVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSDKRFAG 193
           NVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSDKRFAG
Sbjct: 122 NVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSDKRFAG 181

Query: 194 FSKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKKGIEADDIEGLYKK 253
           FSKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKKGIEAD IEGLYKK
Sbjct: 182 FSKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKKGIEADGIEGLYKK 241

Query: 254 VHAAIRADPSVKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAANADDDDDDED 313
           VHAAIRADPSVKKSDKP PKAHKRYNLKKLTYDERKARLVERLNALNSAANADDDDDD++
Sbjct: 242 VHAAIRADPSVKKSDKPPPKAHKRYNLKKLTYDERKARLVERLNALNSAANADDDDDDDE 301

Query: 314 DE 316
           D+
Sbjct: 302 DD 303

[Close]

BLAST of Carg21212-RA vs. ExPASy TrEMBL
Match: A0A6J1G1K9 (60S ribosomal protein L5-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449844 PE=3 SV=1)

HSP 1 Score: 566.2 bits (1458), Expect = 8.4e-158
Identity = 299/335 (89.25%), Postives = 302/335 (90.15%), Query Frame = 0


Query: 14  AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRIVVRFSNKDIT 73
           AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRIVVRFSNKDIT
Sbjct: 2   AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRIVVRFSNKDIT 61

Query: 74  AQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDDEYEG 133
           AQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDDEYEG
Sbjct: 62  AQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDDEYEG 121

Query: 134 NVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSDKRFAG 193
           NVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSDKRFAG
Sbjct: 122 NVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSDKRFAG 181

Query: 194 FSKDSKQLDADVHRKYIYGGHVAAYMR--------------------------------- 253
           FSKDSKQLDADVHRKYIYGGHVAAYMR                                 
Sbjct: 182 FSKDSKQLDADVHRKYIYGGHVAAYMRVRPCCLFVLMTCYLYPSKKLYKRLVTFYIWLHQ 241

Query: 254 TLMEDEPEKYQTHFSEYIKKGIEADDIEGLYKKVHAAIRADPSVKKSDKPQPKAHKRYNL 313
           TLMEDEPEKYQTHFSEYIKKGIEADDIEGLYKKVHAAIRADPSVKKSDKPQPKAHKRYNL
Sbjct: 242 TLMEDEPEKYQTHFSEYIKKGIEADDIEGLYKKVHAAIRADPSVKKSDKPQPKAHKRYNL 301

Query: 314 KKLTYDERKARLVERLNALNSAANADDDDDDEDDE 316
           KKLTYDERKARLVERLNALNSAANADDDDDD+D++
Sbjct: 302 KKLTYDERKARLVERLNALNSAANADDDDDDDDED 336

[Close]

BLAST of Carg21212-RA vs. ExPASy TrEMBL
Match: A0A6J1GXQ9 (60S ribosomal protein L5 OS=Cucurbita moschata OX=3662 GN=LOC111458161 PE=3 SV=1)

HSP 1 Score: 562.0 bits (1447), Expect = 1.6e-156
Identity = 289/303 (95.38%), Postives = 297/303 (98.02%), Query Frame = 0


Query: 14  AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRIVVRFSNKDIT 73
           AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYR VVRFSNKD+T
Sbjct: 2   AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFSNKDVT 61

Query: 74  AQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDDEYEG 133
           AQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLK LEMD+EYEG
Sbjct: 62  AQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDEEYEG 121

Query: 134 NVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSDKRFAG 193
           NVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHS+KRFAG
Sbjct: 122 NVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSEKRFAG 181

Query: 194 FSKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKKGIEADDIEGLYKK 253
           FSKD KQLDA+VHRKYI+GGHVAAYMRTLMEDEPEKYQ+HFS+YIKKGIEAD+IEGLYKK
Sbjct: 182 FSKDGKQLDAEVHRKYIFGGHVAAYMRTLMEDEPEKYQSHFSQYIKKGIEADNIEGLYKK 241

Query: 254 VHAAIRADPSVKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAANAD-DDDDDE 313
           VHAAIRADP VKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNS ANAD DDDDDE
Sbjct: 242 VHAAIRADPVVKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSKANADEDDDDDE 301

Query: 314 DDE 316
           DDE
Sbjct: 302 DDE 304

[Close]

BLAST of Carg21212-RA vs. ExPASy TrEMBL
Match: A0A6J1KC97 (60S ribosomal protein L5 OS=Cucurbita maxima OX=3661 GN=LOC111493018 PE=3 SV=1)

HSP 1 Score: 558.9 bits (1439), Expect = 1.3e-155
Identity = 287/303 (94.72%), Postives = 297/303 (98.02%), Query Frame = 0


Query: 14  AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRIVVRFSNKDIT 73
           AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYR VVRFSNKD+T
Sbjct: 2   AFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFSNKDVT 61

Query: 74  AQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDDEYEG 133
           AQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLK L+MD+EYEG
Sbjct: 62  AQIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLDMDEEYEG 121

Query: 134 NVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSDKRFAG 193
           NVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHS+KRFAG
Sbjct: 122 NVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSEKRFAG 181

Query: 194 FSKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKKGIEADDIEGLYKK 253
           FSKD KQLDA+VHRKYI+GGHVAAYMRTLMEDEPEKYQ+HFS+YIKKGIEAD+IEGLYKK
Sbjct: 182 FSKDGKQLDAEVHRKYIFGGHVAAYMRTLMEDEPEKYQSHFSQYIKKGIEADNIEGLYKK 241

Query: 254 VHAAIRADPSVKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAANAD-DDDDDE 313
           VHAAIRADP VKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNS A+AD DDDDDE
Sbjct: 242 VHAAIRADPVVKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSKAHADEDDDDDE 301

Query: 314 DDE 316
           DDE
Sbjct: 302 DDE 304

[Close]

BLAST of Carg21212-RA vs. TAIR 10
Match: AT3G25520.1 (ribosomal protein L5 )

HSP 1 Score: 487.3 bits (1253), Expect = 9.5e-138
Identity = 242/299 (80.94%), Postives = 271/299 (90.64%), Query Frame = 0


Query: 15  FAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRIVVRFSNKDITA 74
           F K+ K+ AYFKRYQVKF+RRR+GKTDYRARIRLINQDKNKYNTPKYR VVRF+NKDI A
Sbjct: 3   FVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVA 62

Query: 75  QIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDDEYEGN 134
           QI+SASIAGD+V ASAY+HELP+YGL VGLTNYAAAYCTGLLLARRVLK LEMDDEYEGN
Sbjct: 63  QIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGN 122

Query: 135 VEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 194
           VEATGED+SVEP D+RRPFRALLDVGL++TTTGNRVFGALKGALDGGLDIPHSDKRFAGF
Sbjct: 123 VEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 182

Query: 195 SKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKKGIEADDIEGLYKKV 254
            K++KQLDA++HR YIYGGHV+ YM+ L EDEPEK QTHFS YIKKG+EA+ IE LYKKV
Sbjct: 183 HKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEELYKKV 242

Query: 255 HAAIRADPSVKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAANADDDDDDED 314
           HAAIRADP+ KK+ KP PK HKRYNLKKLTY+ERK +L+ER+ ALN A   DDD+DDE+
Sbjct: 243 HAAIRADPNPKKTVKPAPKQHKRYNLKKLTYEERKNKLIERVKALNGAGGDDDDEDDEE 301

[Close]

BLAST of Carg21212-RA vs. TAIR 10
Match: AT5G39740.1 (ribosomal protein L5 B )

HSP 1 Score: 483.8 bits (1244), Expect = 1.1e-136
Identity = 239/299 (79.93%), Postives = 271/299 (90.64%), Query Frame = 0


Query: 15  FAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRIVVRFSNKDITA 74
           F K+ K+ AYFKRYQVKF+RRR+GKTDYRARIRLINQDKNKYNTPKYR VVRF+NKDI A
Sbjct: 3   FVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVA 62

Query: 75  QIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDDEYEGN 134
           QI+SASIAGD+V ASAY+HELP+YGL VGLTNYAAAYCTGLLLARRVLK LEMDDEYEGN
Sbjct: 63  QIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGN 122

Query: 135 VEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 194
           VEATGED+SVEP D+RRPFRALLDVGL++TTTGNRVFGALKGALDGGLDIPHSDKRFAGF
Sbjct: 123 VEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 182

Query: 195 SKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKKGIEADDIEGLYKKV 254
            K++KQLDA++HR YIYGGHV+ YM+ L EDEPEK QTHFS YIKKG+EA+ IE +YKKV
Sbjct: 183 HKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEEMYKKV 242

Query: 255 HAAIRADPSVKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAANADDDDDDED 314
           HAAIRA+P+ KK++K  PK HKRYNLKKLTY+ERK +L+ER+ ALN A   DDD+DDE+
Sbjct: 243 HAAIRAEPNHKKTEKSAPKEHKRYNLKKLTYEERKNKLIERVKALNGAGGDDDDEDDEE 301

[Close]

BLAST of Carg21212-RA vs. TAIR 10
Match: AT5G39740.2 (ribosomal protein L5 B )

HSP 1 Score: 483.8 bits (1244), Expect = 1.1e-136
Identity = 239/299 (79.93%), Postives = 271/299 (90.64%), Query Frame = 0


Query: 15  FAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRIVVRFSNKDITA 74
           F K+ K+ AYFKRYQVKF+RRR+GKTDYRARIRLINQDKNKYNTPKYR VVRF+NKDI A
Sbjct: 3   FVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVA 62

Query: 75  QIISASIAGDLVLASAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDDEYEGN 134
           QI+SASIAGD+V ASAY+HELP+YGL VGLTNYAAAYCTGLLLARRVLK LEMDDEYEGN
Sbjct: 63  QIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGN 122

Query: 135 VEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 194
           VEATGED+SVEP D+RRPFRALLDVGL++TTTGNRVFGALKGALDGGLDIPHSDKRFAGF
Sbjct: 123 VEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 182

Query: 195 SKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKKGIEADDIEGLYKKV 254
            K++KQLDA++HR YIYGGHV+ YM+ L EDEPEK QTHFS YIKKG+EA+ IE +YKKV
Sbjct: 183 HKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEEMYKKV 242

Query: 255 HAAIRADPSVKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAANADDDDDDED 314
           HAAIRA+P+ KK++K  PK HKRYNLKKLTY+ERK +L+ER+ ALN A   DDD+DDE+
Sbjct: 243 HAAIRAEPNHKKTEKSAPKEHKRYNLKKLTYEERKNKLIERVKALNGAGGDDDDEDDEE 301

[Close]

BLAST of Carg21212-RA vs. TAIR 10
Match: AT3G25520.2 (ribosomal protein L5 )

HSP 1 Score: 305.8 bits (782), Expect = 3.9e-83
Identity = 149/189 (78.84%), Postives = 169/189 (89.42%), Query Frame = 0


Query: 125 LEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLLKTTTGNRVFGALKGALDGGLDI 184
           LEMDDEYEGNVEATGED+SVEP D+RRPFRALLDVGL++TTTGNRVFGALKGALDGGLDI
Sbjct: 2   LEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDI 61

Query: 185 PHSDKRFAGFSKDSKQLDADVHRKYIYGGHVAAYMRTLMEDEPEKYQTHFSEYIKKGIEA 244
           PHSDKRFAGF K++KQLDA++HR YIYGGHV+ YM+ L EDEPEK QTHFS YIKKG+EA
Sbjct: 62  PHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEA 121

Query: 245 DDIEGLYKKVHAAIRADPSVKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAAN 304
           + IE LYKKVHAAIRADP+ KK+ KP PK HKRYNLKKLTY+ERK +L+ER+ ALN A  
Sbjct: 122 ESIEELYKKVHAAIRADPNPKKTVKPAPKQHKRYNLKKLTYEERKNKLIERVKALNGAGG 181

Query: 305 ADDDDDDED 314
            DDD+DDE+
Sbjct: 182 DDDDEDDEE 190

The following BLAST results are available for this feature:

BLAST of Carg21212-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7012684.1	3.6e-171	100.00	60S ribosomal protein L5, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023541888.1	4.7e-163	99.67	60S ribosomal protein L5-like [Cucurbita pepo subsp. pepo]	[more]
KAG6573600.1	6.1e-163	99.34	60S ribosomal protein L5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022945687.1	1.4e-162	99.01	60S ribosomal protein L5-like isoform X2 [Cucurbita moschata]	[more]
XP_022966860.1	4.4e-161	98.34	60S ribosomal protein L5-like [Cucurbita maxima]	[more]

BLAST of Carg21212-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6UNT2	2.1e-153	91.36	60S ribosomal protein L5 OS=Cucumis sativus OX=3659 GN=RPL5 PE=2 SV=1	[more]
A2WXX3	2.9e-139	80.92	60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica OX=39946 GN=RPL5A PE=3 ...	[more]
Q8L4L4	6.4e-139	81.25	60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL5B PE=...	[more]
Q0JGY1	8.4e-139	80.92	60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL5A PE=...	[more]
Q8LBI1	1.3e-136	80.94	60S ribosomal protein L5-1 OS=Arabidopsis thaliana OX=3702 GN=RPL5A PE=1 SV=2	[more]

BLAST of Carg21212-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G1M2	6.6e-163	99.01	60S ribosomal protein L5-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1HSR8	2.1e-161	98.34	60S ribosomal protein L5-like OS=Cucurbita maxima OX=3661 GN=LOC111466439 PE=3 S...	[more]
A0A6J1G1K9	8.4e-158	89.25	60S ribosomal protein L5-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1GXQ9	1.6e-156	95.38	60S ribosomal protein L5 OS=Cucurbita moschata OX=3662 GN=LOC111458161 PE=3 SV=1	[more]
A0A6J1KC97	1.3e-155	94.72	60S ribosomal protein L5 OS=Cucurbita maxima OX=3661 GN=LOC111493018 PE=3 SV=1	[more]

BLAST of Carg21212-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25520.1	9.5e-138	80.94	ribosomal protein L5	[more]
AT5G39740.1	1.1e-136	79.93	ribosomal protein L5 B	[more]
AT5G39740.2	1.1e-136	79.93	ribosomal protein L5 B	[more]
AT3G25520.2	3.9e-83	78.84	ribosomal protein L5	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005485	Ribosomal protein L5 eukaryotic/L18 archaeal	PRINTS	PR00058	RIBOSOMALL5	coord: 55..74 score: 72.19 coord: 218..238 score: 49.4 coord: 32..51 score: 76.25 coord: 176..195 score: 70.0 coord: 96..116 score: 83.33 coord: 156..175 score: 72.19
IPR005485	Ribosomal protein L5 eukaryotic/L18 archaeal	PFAM	PF17144	Ribosomal_L5e	coord: 26..187 e-value: 9.9E-82 score: 272.8
IPR005485	Ribosomal protein L5 eukaryotic/L18 archaeal	PANTHER	PTHR23410	RIBOSOMAL PROTEIN L5-RELATED	coord: 14..310
IPR005485	Ribosomal protein L5 eukaryotic/L18 archaeal	HAMAP	MF_01337_A	Ribosomal_L18_A	coord: 26..258 score: 22.124208
IPR025607	Ribosomal protein L5 eukaryotic/L18 archaeal, C-terminal	PFAM	PF14204	Ribosomal_L18_c	coord: 203..293 e-value: 3.7E-35 score: 120.7
None	No IPR available	GENE3D	3.30.420.100		coord: 13..303 e-value: 1.3E-145 score: 486.5
None	No IPR available	PANTHER	PTHR23410:SF28	SUBFAMILY NOT NAMED	coord: 14..310
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 53..182 e-value: 2.2962E-27 score: 101.077
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 23..263

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg21212	Carg21212	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg21212-RA:9	Carg21212-RA:9	exon
Carg21212-RA:8	Carg21212-RA:8	exon
Carg21212-RA:7	Carg21212-RA:7	exon
Carg21212-RA:6	Carg21212-RA:6	exon
Carg21212-RA:5	Carg21212-RA:5	exon
Carg21212-RA:4	Carg21212-RA:4	exon
Carg21212-RA:3	Carg21212-RA:3	exon
Carg21212-RA:2	Carg21212-RA:2	exon
Carg21212-RA:1	Carg21212-RA:1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg21212-RA:three_prime_utr	Carg21212-RA:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg21212-RA:cds	Carg21212-RA:cds_9	CDS
Carg21212-RA:cds	Carg21212-RA:cds_8	CDS
Carg21212-RA:cds	Carg21212-RA:cds_7	CDS
Carg21212-RA:cds	Carg21212-RA:cds_6	CDS
Carg21212-RA:cds	Carg21212-RA:cds_5	CDS
Carg21212-RA:cds	Carg21212-RA:cds_4	CDS
Carg21212-RA:cds	Carg21212-RA:cds_3	CDS
Carg21212-RA:cds	Carg21212-RA:cds_2	CDS
Carg21212-RA:cds	Carg21212-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg21212-RA	Carg21212-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0000027	ribosomal large subunit assembly
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome