Carg24855 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTCCGCTTGCCGAAGAATTGCGAGCAGAATCTCTCAATCCTCCATCAGAACAGTTGTTCGTACAAATTCGCCGCCCAAAGCTTCATCTTTTCCGTTCACTTTACCTTTCAATTGCACTGCACCATCTGTTCGCCGGTTCTCGCTCGCCAGGTAAATCTGGTTATCCTTTCATTTCTTCTTGTTTTGTGTATCTTGTTGTGAGTTGTTTCAATATTTTGTTTGTTTTTTTTTTTCAAAACTTCTTGATCTACTACTAGGGCCCCGTCGGAGCTGGGATGCATGCAATCTCTTTTGCCTTTTCACAACGCGGTTGCTGGAGCGAGAATGATTTCGTGTCTGAGTACAAATTCGAGGAGTTGTCGTGCGCTTTCTCAGGGTACTCTCTGCTGCACCTCTCCCAGCCTCTAA ATGGCTTCCGCTTGCCGAAGAATTGCGAGCAGAATCTCTCAATCCTCCATCAGAACAGTTGTTCGTACAAATTCGCCGCCCAAAGCTTCATCTTTTCCGTTCACTTTACCTTTCAATTGCACTGCACCATCTGTTCGCCGGTTCTCGCTCGCCAGGGCCCCGTCGGAGCTGGGATGCATGCAATCTCTTTTGCCTTTTCACAACGCGGTTGCTGGAGCGAGAATGATTTCGTGTCTGAGTACAAATTCGAGGAGTTGTCGTGCGCTTTCTCAGGGTACTCTCTGCTGCACCTCTCCCAGCCTCTAA ATGGCTTCCGCTTGCCGAAGAATTGCGAGCAGAATCTCTCAATCCTCCATCAGAACAGTTGTTCGTACAAATTCGCCGCCCAAAGCTTCATCTTTTCCGTTCACTTTACCTTTCAATTGCACTGCACCATCTGTTCGCCGGTTCTCGCTCGCCAGGGCCCCGTCGGAGCTGGGATGCATGCAATCTCTTTTGCCTTTTCACAACGCGGTTGCTGGAGCGAGAATGATTTCGTGTCTGAGTACAAATTCGAGGAGTTGTCGTGCGCTTTCTCAGGGTACTCTCTGCTGCACCTCTCCCAGCCTCTAA MASACRRIASRISQSSIRTVVRTNSPPKASSFPFTLPFNCTAPSVRRFSLARAPSELGCMQSLLPFHNAVAGARMISCLSTNSRSCRALSQGTLCCTSPSL Homology
BLAST of Carg24855 vs. NCBI nr
Match: KAG7015719.1 (hypothetical protein SDJN02_23356, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 195.3 bits (495), Expect = 2.6e-46 Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0
BLAST of Carg24855 vs. NCBI nr
Match: XP_022923170.1 (uncharacterized protein LOC111430946 isoform X1 [Cucurbita moschata]) HSP 1 Score: 190.7 bits (483), Expect = 6.3e-45 Identity = 99/101 (98.02%), Postives = 100/101 (99.01%), Query Frame = 0
BLAST of Carg24855 vs. NCBI nr
Match: XP_022965218.1 (uncharacterized protein LOC111465140 isoform X1 [Cucurbita maxima]) HSP 1 Score: 188.0 bits (476), Expect = 4.1e-44 Identity = 98/101 (97.03%), Postives = 99/101 (98.02%), Query Frame = 0
BLAST of Carg24855 vs. NCBI nr
Match: XP_023551885.1 (uncharacterized protein LOC111809723 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 183.0 bits (463), Expect = 1.3e-42 Identity = 95/101 (94.06%), Postives = 98/101 (97.03%), Query Frame = 0
BLAST of Carg24855 vs. NCBI nr
Match: XP_022923171.1 (uncharacterized protein LOC111430946 isoform X2 [Cucurbita moschata]) HSP 1 Score: 171.0 bits (432), Expect = 5.2e-39 Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0
BLAST of Carg24855 vs. ExPASy Swiss-Prot
Match: Q6NNL9 (Protein NONRESPONDING TO OXYLIPINS 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NOXY2 PE=1 SV=2) HSP 1 Score: 51.2 bits (121), Expect = 7.9e-06 Identity = 40/103 (38.83%), Postives = 60/103 (58.25%), Query Frame = 0
BLAST of Carg24855 vs. ExPASy TrEMBL
Match: A0A6J1EAY8 (uncharacterized protein LOC111430946 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430946 PE=4 SV=1) HSP 1 Score: 190.7 bits (483), Expect = 3.1e-45 Identity = 99/101 (98.02%), Postives = 100/101 (99.01%), Query Frame = 0
BLAST of Carg24855 vs. ExPASy TrEMBL
Match: A0A6J1HN90 (uncharacterized protein LOC111465140 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465140 PE=4 SV=1) HSP 1 Score: 188.0 bits (476), Expect = 2.0e-44 Identity = 98/101 (97.03%), Postives = 99/101 (98.02%), Query Frame = 0
BLAST of Carg24855 vs. ExPASy TrEMBL
Match: A0A6J1E633 (uncharacterized protein LOC111430946 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430946 PE=4 SV=1) HSP 1 Score: 171.0 bits (432), Expect = 2.5e-39 Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0
BLAST of Carg24855 vs. ExPASy TrEMBL
Match: A0A6J1HL39 (uncharacterized protein LOC111465140 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111465140 PE=4 SV=1) HSP 1 Score: 168.3 bits (425), Expect = 1.6e-38 Identity = 88/94 (93.62%), Postives = 90/94 (95.74%), Query Frame = 0
BLAST of Carg24855 vs. ExPASy TrEMBL
Match: A0A6J1HQE3 (uncharacterized protein LOC111465140 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111465140 PE=4 SV=1) HSP 1 Score: 168.3 bits (425), Expect = 1.6e-38 Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0
BLAST of Carg24855 vs. TAIR 10
Match: AT4G17310.1 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47455.7); Has 164 Blast hits to 164 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 105.1 bits (261), Expect = 3.3e-23 Identity = 62/103 (60.19%), Postives = 73/103 (70.87%), Query Frame = 0
BLAST of Carg24855 vs. TAIR 10
Match: AT4G17310.2 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47455.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 86.7 bits (213), Expect = 1.2e-17 Identity = 53/93 (56.99%), Postives = 64/93 (68.82%), Query Frame = 0
BLAST of Carg24855 vs. TAIR 10
Match: AT5G47455.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.1); Has 147 Blast hits to 147 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 82.4 bits (202), Expect = 2.3e-16 Identity = 49/97 (50.52%), Postives = 61/97 (62.89%), Query Frame = 0
BLAST of Carg24855 vs. TAIR 10
Match: AT5G47455.6 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 82.4 bits (202), Expect = 2.3e-16 Identity = 49/97 (50.52%), Postives = 61/97 (62.89%), Query Frame = 0
BLAST of Carg24855 vs. TAIR 10
Match: AT5G47455.7 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.1); Has 147 Blast hits to 147 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 82.4 bits (202), Expect = 2.3e-16 Identity = 49/97 (50.52%), Postives = 61/97 (62.89%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|