Tan0010543 (gene) Snake gourd v1

Overview


Name	Tan0010543
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	protein CURVATURE THYLAKOID 1B, chloroplastic
Location	LG06: 46152304 .. 46154244 (-)
RNA-Seq Expression	Tan0010543
Synteny	Tan0010543

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCAATCTTCTCTCATTACTCACTCACACAACATTATCCAAATTGAGAAATGAGTGGTTGTCCATCTTCAAACTTAAATCCCAACTCCTTCTCTCCATATTCCCATATCTAAATTATCGAAACCCCTCAACAAAAAATACTTAAACATAACCTCCAGAAAGGAAAGAAAAAACACACGAAATCAATCTACAAAACAAAAATACCAACAACAAAATCTTCACTCTCTCCTATAGCCTTTTCTTCTGTAATTTGAGTGCCAATGGCTTCTTCTTCCTCCTCCACATTCACTCTCTCTTCCTCCTCCACTCTCCTTGACTCCAAGGCGCCCCGTCAATCCGCTGCGCCATCATCGAATGTGCCGCTCCCCACTCTCCCACCACCACCGTCGCCGGCCCAAATTCGCCCTTGGAAGTCCGCTGCCTATTGTAAGAATTACGATGCACATTGTTTTGAGTTGATAAGTTTTGCATGGTTTCTTTTTTGTTAAATCACTATTGATTTTAAAAGTTGTCTCATCAATGAATTACGATAAATTTAATCTTTTATTCCTAATCTTAACAAGATTCTTCATTTTTAGGTCGGAAGATTGCTCGCAATGTAATGGCCATGGCAACGGGAGAAGTGCCAGCGGAAGTGGCTGCAGGGGAGCTGGCGGAGCTGCCGGAAATTATTAAAAAAGTTCAAGAAGCTGTATGCTAAAAAAAACCCATATAATAATTTTTATTTTTATTTTTTTTTTGTTTTTTGAGTTGTGTTTTAGATTGGCTTGGATTTTATTTGTCAGTGGGATAAGGTTGAAGATAAGTATGCAGTAAGTTCACTTGCAGTGTCTGGTTTTGTCGCACTTTGGGCCTCCGCCGGCGTTGTCTCGGTGAGTTATATGTGTGTCTATATGTTTGCTTATTTATTTGAAAAATTAATAATGGATTATATAATTAATTTAATATAAGCTTTAAGTGATGGGTGTTAAATTTAAGAAATGGGCAAAATTTTGTGGGATTTTTTTTGACAGGCAATTGATAGGCTTCCTCTAATCCCTGGCCTCCTTGAGCTTGTGGGCATTGGCTATTCTGGGGTAAGTTTTATTCAGTTTCTTTAAAATTCTTTCAATTGTTGAAAGAAAATAGGATTGTTAAACAGAATCGGATCGAAAATTGATTAAACTATACAAAATGCCTCAAATGTGTGTAACTGGTTTCAATTTTGGCTCGAATTTATGTATTTTCGTTTCAATTATCAAGATGTGTACATGACTTCAATCTTGGCTTTAATATACATAATTAGTTTCAATTTTAATGCTAATGTTTTAAAAAATTTCCGCTATAATTAAATTTGGTCAAAAATAGTGTTTTTTTCCTTCAAGATTCAGAGTAAAATTGAAACTTAGTTATGTAAATAAAGAGCGTTTTGTATGACTTAGCTTCGAAATAATGAATTGTTTTCCATGATTTCAAAAGGGTGTCTAAAATTTCTGTTTGATAATGAAATCTTTGTGCAGTGGTTTGCATACAAGTATCTAATTTTCAGACCAGACAGGTGAGTTCTAACATTGTTTAAGATTGCATGAATTTGTTTTTTTTTTTTGTTCCTTTTTATATTATTACATTTTATGGATTATTGCAGGGAAGCTTTGTTGCAAAAATTAAAGGAAACTTACAATGAGATAATAGGGAGCAGCTAAAAAAGTGTTCAAAGAAGGGATCATTTAATGCTCTGTGGCTAATAAGAGTTTAAAATTTGGTCTTCTTTTCAAGCAAATCTTTATTGCATCATGCAAGTATATTTGCATGAAAATGTAACTTCTTCCCCACCTTTTTTTCCATTTATTTTGTAATATCTAGCTAACTCAATCCCACTATACTTTATGCTTTTATTTTACTCTTAAGTGCTGTCAAATGATTGCAAATTCTTAACCACTTTTGAAAGCTAAACTTGGTCAGG

mRNA sequence

TTCAATCTTCTCTCATTACTCACTCACACAACATTATCCAAATTGAGAAATGAGTGGTTGTCCATCTTCAAACTTAAATCCCAACTCCTTCTCTCCATATTCCCATATCTAAATTATCGAAACCCCTCAACAAAAAATACTTAAACATAACCTCCAGAAAGGAAAGAAAAAACACACGAAATCAATCTACAAAACAAAAATACCAACAACAAAATCTTCACTCTCTCCTATAGCCTTTTCTTCTGTAATTTGAGTGCCAATGGCTTCTTCTTCCTCCTCCACATTCACTCTCTCTTCCTCCTCCACTCTCCTTGACTCCAAGGCGCCCCGTCAATCCGCTGCGCCATCATCGAATGTGCCGCTCCCCACTCTCCCACCACCACCGTCGCCGGCCCAAATTCGCCCTTGGAAGTCCGCTGCCTATTGTCGGAAGATTGCTCGCAATGTAATGGCCATGGCAACGGGAGAAGTGCCAGCGGAAGTGGCTGCAGGGGAGCTGGCGGAGCTGCCGGAAATTATTAAAAAAGTTCAAGAAGCTTGGGATAAGGTTGAAGATAAGTATGCAGTAAGTTCACTTGCAGTGTCTGGTTTTGTCGCACTTTGGGCCTCCGCCGGCGTTGTCTCGGCAATTGATAGGCTTCCTCTAATCCCTGGCCTCCTTGAGCTTGTGGGCATTGGCTATTCTGGGTGGTTTGCATACAAGTATCTAATTTTCAGACCAGACAGGGAAGCTTTGTTGCAAAAATTAAAGGAAACTTACAATGAGATAATAGGGAGCAGCTAAAAAAGTGTTCAAAGAAGGGATCATTTAATGCTCTGTGGCTAATAAGAGTTTAAAATTTGGTCTTCTTTTCAAGCAAATCTTTATTGCATCATGCAAGTATATTTGCATGAAAATGTAACTTCTTCCCCACCTTTTTTTCCATTTATTTTGTAATATCTAGCTAACTCAATCCCACTATACTTTATGCTTTTATTTTACTCTTAAGTGCTGTCAAATGATTGCAAATTCTTAACCACTTTTGAAAGCTAAACTTGGTCAGG

Coding sequence (CDS)

ATGGCTTCTTCTTCCTCCTCCACATTCACTCTCTCTTCCTCCTCCACTCTCCTTGACTCCAAGGCGCCCCGTCAATCCGCTGCGCCATCATCGAATGTGCCGCTCCCCACTCTCCCACCACCACCGTCGCCGGCCCAAATTCGCCCTTGGAAGTCCGCTGCCTATTGTCGGAAGATTGCTCGCAATGTAATGGCCATGGCAACGGGAGAAGTGCCAGCGGAAGTGGCTGCAGGGGAGCTGGCGGAGCTGCCGGAAATTATTAAAAAAGTTCAAGAAGCTTGGGATAAGGTTGAAGATAAGTATGCAGTAAGTTCACTTGCAGTGTCTGGTTTTGTCGCACTTTGGGCCTCCGCCGGCGTTGTCTCGGCAATTGATAGGCTTCCTCTAATCCCTGGCCTCCTTGAGCTTGTGGGCATTGGCTATTCTGGGTGGTTTGCATACAAGTATCTAATTTTCAGACCAGACAGGGAAGCTTTGTTGCAAAAATTAAAGGAAACTTACAATGAGATAATAGGGAGCAGCTAA

Protein sequence

MASSSSSTFTLSSSSTLLDSKAPRQSAAPSSNVPLPTLPPPPSPAQIRPWKSAAYCRKIARNVMAMATGEVPAEVAAGELAELPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLIPGLLELVGIGYSGWFAYKYLIFRPDREALLQKLKETYNEIIGSS

Homology

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BLAST of Tan0010543 vs. ExPASy Swiss-Prot
Match: Q8LCA1 (Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1B PE=1 SV=2)

HSP 1 Score: 188.7 bits (478), Expect = 5.4e-47
Identity = 99/173 (57.23%), Postives = 130/173 (75.14%), Query Frame = 0


Query: 7   STFTLSSSSTLLDSKAP--RQSAAPSSNVPLPTLPPPPSPAQIRPWKSAAYCRKIARNVM 66
           ++ ++SSSST++DS+AP  R ++A +S+    +LP  P  +  R  K+ AYCRKI RNV+
Sbjct: 2   ASLSVSSSSTIIDSRAPPSRLASASASSPSCISLPTLPIQSHTRAAKATAYCRKIVRNVV 61

Query: 67  AMAT---GEVPAEVAAGELAELPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVV 126
             AT   GE PA     E  ELPEI+K  QEAW+KV+DKYA+ SLA +G VALW SAG++
Sbjct: 62  TRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMI 121

Query: 127 SAIDRLPLIPGLLELVGIGYSGWFAYKYLIFRPDREALLQKLKETYNEIIGSS 175
           SAIDRLPL+PG+LELVGIGY+GWF YK L+F+PDREAL +K+K TY +I+GSS
Sbjct: 122 SAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILGSS 174

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BLAST of Tan0010543 vs. ExPASy Swiss-Prot
Match: Q9M812 (Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1C PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.9e-18
Identity = 39/88 (44.32%), Postives = 62/88 (70.45%), Query Frame = 0


Query: 85  EIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLIPGLLELVGIGYSGW 144
           +++  +Q  WDK ED+  +  L  +G VALWAS  +++AID+LP+I    ELVGI +S W
Sbjct: 68  DVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELVGILFSTW 127

Query: 145 FAYKYLIFRPDREALLQKLKETYNEIIG 173
           F Y+YL+F+PDR+ L + +K++  +I+G
Sbjct: 128 FTYRYLLFKPDRQELSKIVKKSVADILG 155

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BLAST of Tan0010543 vs. ExPASy Swiss-Prot
Match: O04616 (Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1A PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.2e-15
Identity = 37/89 (41.57%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 85  EIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLIPGLLELVGIGYSGW 144
           E+I  ++E WD +E+K  V        VA+W S+ VV AI+ +PL+P ++ELVG+GY+GW
Sbjct: 75  ELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGW 134

Query: 145 FAYKYLIFRPDREALLQKLKETYNEIIGS 174
           F Y+YL+F+  R+ L + ++    +I GS
Sbjct: 135 FVYRYLLFKSSRKELAEDIESLKKKIAGS 163

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BLAST of Tan0010543 vs. ExPASy Swiss-Prot
Match: Q8LDD3 (Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1D PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.1e-10
Identity = 33/101 (32.67%), Postives = 59/101 (58.42%), Query Frame = 0


Query: 73  AEVAAGELAELPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLIPG 132
           A  A  E  +  E +  ++   DK    Y++        VAL+ ++ +VS+++ +PL P 
Sbjct: 93  APQAEDEETQALEFLNDIKLDSDKT---YSILLYGSGAIVALYLTSAIVSSLEAIPLFPK 152

Query: 133 LLELVGIGYSGWFAYKYLIFRPDREALLQKLKETYNEIIGS 174
           L+E+VG+GY+ WF  +YL+F+ +RE L  K+ E   +++GS
Sbjct: 153 LMEVVGLGYTLWFTTRYLLFKRNREELKTKVSEIKKQVLGS 190

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BLAST of Tan0010543 vs. ExPASy Swiss-Prot
Match: Q119Z5 (Glutamate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=gltX PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.1e-06
Identity = 22/55 (40.00%), Postives = 36/55 (65.45%), Query Frame = 0


Query: 118 AGVVSAIDRLPLIPGLLELVGIGYSGWFAYKYLIFRPDREALLQKLKETYNEIIG 173
           A V+ A+D +P++  + EL+G+ Y  WF Y+YL+ R +R+ LL K++    EI G
Sbjct: 824 AVVIEALDGIPILSIIFELIGVIYLVWFVYRYLLKRSNRQELLDKIENIKREIFG 878

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BLAST of Tan0010543 vs. NCBI nr
Match: XP_038906765.1 (protein CURVATURE THYLAKOID 1B, chloroplastic [Benincasa hispida])

HSP 1 Score: 303.9 bits (777), Expect = 8.8e-79
Identity = 162/175 (92.57%), Postives = 170/175 (97.14%), Query Frame = 0


Query: 1   MASSSSSTFTLSSSSTLLDSKAPRQSAAPSSNVPLPTLPPPPSP-AQIRPWKSAAYCRKI 60
           MASSSSSTF LSSSSTLLDSKAPRQSA+PS+NVPLPTLP PP+P +QIRPWKS AYCRK+
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSANVPLPTLPSPPTPSSQIRPWKSTAYCRKV 60

Query: 61  ARNVMAMATGEVPAEVAAGELAELPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120
           ARNVMAMATGEVPAEVAAGELAE+PEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG
Sbjct: 61  ARNVMAMATGEVPAEVAAGELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLIPGLLELVGIGYSGWFAYKYLIFRPDREALLQKLKETYNEIIGSS 175
           VVSAIDRLPLIPGLLELVGIGY+GWFAYK LIFRPDREALLQKLKETY+EIIGSS
Sbjct: 121 VVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 175

[Close]

BLAST of Tan0010543 vs. NCBI nr
Match: XP_004140528.1 (protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis sativus] >KGN46474.1 hypothetical protein Csa_005298 [Cucumis sativus])

HSP 1 Score: 300.8 bits (769), Expect = 7.5e-78
Identity = 160/175 (91.43%), Postives = 168/175 (96.00%), Query Frame = 0


Query: 1   MASSSSSTFTLSSSSTLLDSKAPRQSAAPSSNVPLPTLPPPPSP-AQIRPWKSAAYCRKI 60
           MASSSSSTF LSSSSTLLDSKAPRQSA+PSS VPLPTLP PP+P +QIRPWKS AYCRKI
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKI 60

Query: 61  ARNVMAMATGEVPAEVAAGELAELPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120
           ARNVM MATGEVPAEVAAGELAE+PEI+KKVQEAWDKVEDKYAVSSLAVSGFVALWASAG
Sbjct: 61  ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLIPGLLELVGIGYSGWFAYKYLIFRPDREALLQKLKETYNEIIGSS 175
           VVSAIDRLPL+PGLLELVGIGY+GWFAYK LIFRPDREALLQKLKETY+EIIGSS
Sbjct: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 175

[Close]

BLAST of Tan0010543 vs. NCBI nr
Match: XP_008459821.1 (PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis melo] >KAA0039802.1 protein CURVATURE THYLAKOID 1B [Cucumis melo var. makuwa] >TYK24695.1 protein CURVATURE THYLAKOID 1B [Cucumis melo var. makuwa])

HSP 1 Score: 297.7 bits (761), Expect = 6.3e-77
Identity = 162/176 (92.05%), Postives = 168/176 (95.45%), Query Frame = 0


Query: 1   MASSSSSTFTLSSS-STLLDSKAPRQSAAPSSNVPLPTLPPPPSP-AQIRPWKSAAYCRK 60
           MASSSSSTF LSSS STLLDSKAPRQS +PSS VPLPTLP PP+P AQIRPWKS AYCRK
Sbjct: 1   MASSSSSTFALSSSASTLLDSKAPRQSGSPSSTVPLPTLPSPPTPSAQIRPWKSTAYCRK 60

Query: 61  IARNVMAMATGEVPAEVAAGELAELPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120
           IARNVMAMATGEVPAEVAAGELAE+PEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA
Sbjct: 61  IARNVMAMATGEVPAEVAAGELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120

Query: 121 GVVSAIDRLPLIPGLLELVGIGYSGWFAYKYLIFRPDREALLQKLKETYNEIIGSS 175
           GVVSAIDRLPL+PGLLELVGIGY+GWFAYK LIFRPDREALLQKLKETY+EIIGSS
Sbjct: 121 GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 176

[Close]

BLAST of Tan0010543 vs. NCBI nr
Match: XP_022992417.1 (protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita maxima])

HSP 1 Score: 296.6 bits (758), Expect = 1.4e-76
Identity = 159/175 (90.86%), Postives = 167/175 (95.43%), Query Frame = 0


Query: 1   MASSSSSTFTLSSSSTLLDSKAPRQSAAPSSNVPLPTLPPPPSPA-QIRPWKSAAYCRKI 60
           MASSSSSTF LSSSSTLLDSKAPRQSA+PSS VPLPTLP PP+P+ QIRPWKS AYCR+I
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPAPSTQIRPWKSTAYCRRI 60

Query: 61  ARNVMAMATGEVPAEVAAGELAELPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120
           ARNVMAMATGEVPAEVA  E+AELPEIIKKVQEAWDKV+DKYAVSSLAVSGFVALWASAG
Sbjct: 61  ARNVMAMATGEVPAEVATVEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLIPGLLELVGIGYSGWFAYKYLIFRPDREALLQKLKETYNEIIGSS 175
           VVSAIDRLPLIPGLLELVGIGY+GWFAYK LIFRPDREALLQKL+ETYNEIIGSS
Sbjct: 121 VVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEIIGSS 175

[Close]

BLAST of Tan0010543 vs. NCBI nr
Match: XP_022929793.1 (protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita moschata] >XP_023547749.1 protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita pepo subsp. pepo] >KAG7013838.1 Protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 294.7 bits (753), Expect = 5.4e-76
Identity = 158/175 (90.29%), Postives = 165/175 (94.29%), Query Frame = 0


Query: 1   MASSSSSTFTLSSSSTLLDSKAPRQSAAPSSNVPLPTLPPPPSPA-QIRPWKSAAYCRKI 60
           MASSSSSTF LSSSSTLLDSKAPRQSA+PSS VPLPTLP PP P+ QIR WKS AYCRKI
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPPPSTQIRSWKSTAYCRKI 60

Query: 61  ARNVMAMATGEVPAEVAAGELAELPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120
           ARNVMAMATGEVPAEVA  E+AELPEIIKKVQEAWDKV+DKYAVSSLAVSGFVALWASAG
Sbjct: 61  ARNVMAMATGEVPAEVATAEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLIPGLLELVGIGYSGWFAYKYLIFRPDREALLQKLKETYNEIIGSS 175
           VVSAIDRLPLIPGLLELVGIGY+GWFAYK LIFRPDREALLQKL+ETYNE+IGSS
Sbjct: 121 VVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEVIGSS 175

[Close]

BLAST of Tan0010543 vs. ExPASy TrEMBL
Match: A0A0A0KCB7 (CAAD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G095900 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 3.6e-78
Identity = 160/175 (91.43%), Postives = 168/175 (96.00%), Query Frame = 0


Query: 1   MASSSSSTFTLSSSSTLLDSKAPRQSAAPSSNVPLPTLPPPPSP-AQIRPWKSAAYCRKI 60
           MASSSSSTF LSSSSTLLDSKAPRQSA+PSS VPLPTLP PP+P +QIRPWKS AYCRKI
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKI 60

Query: 61  ARNVMAMATGEVPAEVAAGELAELPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120
           ARNVM MATGEVPAEVAAGELAE+PEI+KKVQEAWDKVEDKYAVSSLAVSGFVALWASAG
Sbjct: 61  ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLIPGLLELVGIGYSGWFAYKYLIFRPDREALLQKLKETYNEIIGSS 175
           VVSAIDRLPL+PGLLELVGIGY+GWFAYK LIFRPDREALLQKLKETY+EIIGSS
Sbjct: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 175

[Close]

BLAST of Tan0010543 vs. ExPASy TrEMBL
Match: A0A5A7T8Q0 (Protein CURVATURE THYLAKOID 1B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002480 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.1e-77
Identity = 162/176 (92.05%), Postives = 168/176 (95.45%), Query Frame = 0


Query: 1   MASSSSSTFTLSSS-STLLDSKAPRQSAAPSSNVPLPTLPPPPSP-AQIRPWKSAAYCRK 60
           MASSSSSTF LSSS STLLDSKAPRQS +PSS VPLPTLP PP+P AQIRPWKS AYCRK
Sbjct: 1   MASSSSSTFALSSSASTLLDSKAPRQSGSPSSTVPLPTLPSPPTPSAQIRPWKSTAYCRK 60

Query: 61  IARNVMAMATGEVPAEVAAGELAELPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120
           IARNVMAMATGEVPAEVAAGELAE+PEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA
Sbjct: 61  IARNVMAMATGEVPAEVAAGELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120

Query: 121 GVVSAIDRLPLIPGLLELVGIGYSGWFAYKYLIFRPDREALLQKLKETYNEIIGSS 175
           GVVSAIDRLPL+PGLLELVGIGY+GWFAYK LIFRPDREALLQKLKETY+EIIGSS
Sbjct: 121 GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 176

[Close]

BLAST of Tan0010543 vs. ExPASy TrEMBL
Match: A0A1S3CCA4 (protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498834 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.1e-77
Identity = 162/176 (92.05%), Postives = 168/176 (95.45%), Query Frame = 0


Query: 1   MASSSSSTFTLSSS-STLLDSKAPRQSAAPSSNVPLPTLPPPPSP-AQIRPWKSAAYCRK 60
           MASSSSSTF LSSS STLLDSKAPRQS +PSS VPLPTLP PP+P AQIRPWKS AYCRK
Sbjct: 1   MASSSSSTFALSSSASTLLDSKAPRQSGSPSSTVPLPTLPSPPTPSAQIRPWKSTAYCRK 60

Query: 61  IARNVMAMATGEVPAEVAAGELAELPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120
           IARNVMAMATGEVPAEVAAGELAE+PEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA
Sbjct: 61  IARNVMAMATGEVPAEVAAGELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120

Query: 121 GVVSAIDRLPLIPGLLELVGIGYSGWFAYKYLIFRPDREALLQKLKETYNEIIGSS 175
           GVVSAIDRLPL+PGLLELVGIGY+GWFAYK LIFRPDREALLQKLKETY+EIIGSS
Sbjct: 121 GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 176

[Close]

BLAST of Tan0010543 vs. ExPASy TrEMBL
Match: A0A6J1JPR9 (protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111488730 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 6.8e-77
Identity = 159/175 (90.86%), Postives = 167/175 (95.43%), Query Frame = 0


Query: 1   MASSSSSTFTLSSSSTLLDSKAPRQSAAPSSNVPLPTLPPPPSPA-QIRPWKSAAYCRKI 60
           MASSSSSTF LSSSSTLLDSKAPRQSA+PSS VPLPTLP PP+P+ QIRPWKS AYCR+I
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPAPSTQIRPWKSTAYCRRI 60

Query: 61  ARNVMAMATGEVPAEVAAGELAELPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120
           ARNVMAMATGEVPAEVA  E+AELPEIIKKVQEAWDKV+DKYAVSSLAVSGFVALWASAG
Sbjct: 61  ARNVMAMATGEVPAEVATVEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLIPGLLELVGIGYSGWFAYKYLIFRPDREALLQKLKETYNEIIGSS 175
           VVSAIDRLPLIPGLLELVGIGY+GWFAYK LIFRPDREALLQKL+ETYNEIIGSS
Sbjct: 121 VVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEIIGSS 175

[Close]

BLAST of Tan0010543 vs. ExPASy TrEMBL
Match: A0A6J1ET79 (protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111436295 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.6e-76
Identity = 158/175 (90.29%), Postives = 165/175 (94.29%), Query Frame = 0


Query: 1   MASSSSSTFTLSSSSTLLDSKAPRQSAAPSSNVPLPTLPPPPSPA-QIRPWKSAAYCRKI 60
           MASSSSSTF LSSSSTLLDSKAPRQSA+PSS VPLPTLP PP P+ QIR WKS AYCRKI
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPPPSTQIRSWKSTAYCRKI 60

Query: 61  ARNVMAMATGEVPAEVAAGELAELPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120
           ARNVMAMATGEVPAEVA  E+AELPEIIKKVQEAWDKV+DKYAVSSLAVSGFVALWASAG
Sbjct: 61  ARNVMAMATGEVPAEVATAEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLIPGLLELVGIGYSGWFAYKYLIFRPDREALLQKLKETYNEIIGSS 175
           VVSAIDRLPLIPGLLELVGIGY+GWFAYK LIFRPDREALLQKL+ETYNE+IGSS
Sbjct: 121 VVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEVIGSS 175

[Close]

BLAST of Tan0010543 vs. TAIR 10
Match: AT2G46820.1 (photosystem I P subunit )

HSP 1 Score: 188.7 bits (478), Expect = 3.9e-48
Identity = 99/173 (57.23%), Postives = 130/173 (75.14%), Query Frame = 0


Query: 7   STFTLSSSSTLLDSKAP--RQSAAPSSNVPLPTLPPPPSPAQIRPWKSAAYCRKIARNVM 66
           ++ ++SSSST++DS+AP  R ++A +S+    +LP  P  +  R  K+ AYCRKI RNV+
Sbjct: 2   ASLSVSSSSTIIDSRAPPSRLASASASSPSCISLPTLPIQSHTRAAKATAYCRKIVRNVV 61

Query: 67  AMAT---GEVPAEVAAGELAELPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVV 126
             AT   GE PA     E  ELPEI+K  QEAW+KV+DKYA+ SLA +G VALW SAG++
Sbjct: 62  TRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMI 121

Query: 127 SAIDRLPLIPGLLELVGIGYSGWFAYKYLIFRPDREALLQKLKETYNEIIGSS 175
           SAIDRLPL+PG+LELVGIGY+GWF YK L+F+PDREAL +K+K TY +I+GSS
Sbjct: 122 SAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILGSS 174

[Close]

BLAST of Tan0010543 vs. TAIR 10
Match: AT2G46820.2 (photosystem I P subunit )

HSP 1 Score: 188.7 bits (478), Expect = 3.9e-48
Identity = 99/173 (57.23%), Postives = 130/173 (75.14%), Query Frame = 0


Query: 7   STFTLSSSSTLLDSKAP--RQSAAPSSNVPLPTLPPPPSPAQIRPWKSAAYCRKIARNVM 66
           ++ ++SSSST++DS+AP  R ++A +S+    +LP  P  +  R  K+ AYCRKI RNV+
Sbjct: 2   ASLSVSSSSTIIDSRAPPSRLASASASSPSCISLPTLPIQSHTRAAKATAYCRKIVRNVV 61

Query: 67  AMAT---GEVPAEVAAGELAELPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVV 126
             AT   GE PA     E  ELPEI+K  QEAW+KV+DKYA+ SLA +G VALW SAG++
Sbjct: 62  TRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMI 121

Query: 127 SAIDRLPLIPGLLELVGIGYSGWFAYKYLIFRPDREALLQKLKETYNEIIGSS 175
           SAIDRLPL+PG+LELVGIGY+GWF YK L+F+PDREAL +K+K TY +I+GSS
Sbjct: 122 SAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILGSS 174

[Close]

BLAST of Tan0010543 vs. TAIR 10
Match: AT1G52220.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 291 Blast hits to 291 proteins in 50 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 92.0 bits (227), Expect = 4.9e-19
Identity = 39/88 (44.32%), Postives = 62/88 (70.45%), Query Frame = 0


Query: 85  EIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLIPGLLELVGIGYSGW 144
           +++  +Q  WDK ED+  +  L  +G VALWAS  +++AID+LP+I    ELVGI +S W
Sbjct: 68  DVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELVGILFSTW 127

Query: 145 FAYKYLIFRPDREALLQKLKETYNEIIG 173
           F Y+YL+F+PDR+ L + +K++  +I+G
Sbjct: 128 FTYRYLLFKPDRQELSKIVKKSVADILG 155

[Close]

BLAST of Tan0010543 vs. TAIR 10
Match: AT1G52220.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-17
Identity = 39/88 (44.32%), Postives = 62/88 (70.45%), Query Frame = 0


Query: 85  EIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLIPGLLELVGIGYSGW 144
           +++  +Q  WDK ED+  +  L  +G VALWAS  +++AID+LP+I    ELVGI +S W
Sbjct: 68  DVVSTIQN-WDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELVGILFSTW 127

Query: 145 FAYKYLIFRPDREALLQKLKETYNEIIG 173
           F Y+YL+F+PDR+ L + +K++  +I+G
Sbjct: 128 FTYRYLLFKPDRQELSKIVKKSVADILG 154

[Close]

BLAST of Tan0010543 vs. TAIR 10
Match: AT4G01150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 83.2 bits (204), Expect = 2.3e-16
Identity = 37/89 (41.57%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 85  EIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLIPGLLELVGIGYSGW 144
           E+I  ++E WD +E+K  V        VA+W S+ VV AI+ +PL+P ++ELVG+GY+GW
Sbjct: 75  ELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGW 134

Query: 145 FAYKYLIFRPDREALLQKLKETYNEIIGS 174
           F Y+YL+F+  R+ L + ++    +I GS
Sbjct: 135 FVYRYLLFKSSRKELAEDIESLKKKIAGS 163

The following BLAST results are available for this feature:

BLAST of Tan0010543 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LCA1	5.4e-47	57.23	Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9M812	6.9e-18	44.32	Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
O04616	3.2e-15	41.57	Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q8LDD3	9.1e-10	32.67	Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q119Z5	6.1e-06	40.00	Glutamate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=...	[more]

BLAST of Tan0010543 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906765.1	8.8e-79	92.57	protein CURVATURE THYLAKOID 1B, chloroplastic [Benincasa hispida]	[more]
XP_004140528.1	7.5e-78	91.43	protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis sativus] >KGN46474.1 hypo...	[more]
XP_008459821.1	6.3e-77	92.05	PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis melo] >KAA0039...	[more]
XP_022992417.1	1.4e-76	90.86	protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita maxima]	[more]
XP_022929793.1	5.4e-76	90.29	protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita moschata] >XP_023547749...	[more]

BLAST of Tan0010543 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCB7	3.6e-78	91.43	CAAD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G095900 PE=4 S...	[more]
A0A5A7T8Q0	3.1e-77	92.05	Protein CURVATURE THYLAKOID 1B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3CCA4	3.1e-77	92.05	protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1JPR9	6.8e-77	90.86	protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1ET79	2.6e-76	90.29	protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of Tan0010543 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46820.1	3.9e-48	57.23	photosystem I P subunit	[more]
AT2G46820.2	3.9e-48	57.23	photosystem I P subunit	[more]
AT1G52220.1	4.9e-19	44.32	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G52220.2	1.2e-17	44.32	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT4G01150.1	2.3e-16	41.57	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025564	Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain	PFAM	PF14159	CAAD	coord: 88..172 e-value: 6.6E-30 score: 102.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	PANTHER	PTHR33222:SF9	PROTEIN CURVATURE THYLAKOID 1B, CHLOROPLASTIC	coord: 1..174
IPR033344	Protein CURVATURE THYLAKOID 1	PANTHER	PTHR33222	FAMILY NOT NAMED	coord: 1..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0010543.1	Tan0010543.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0004812	aminoacyl-tRNA ligase activity