Tan0010543 (gene) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTCAATCTTCTCTCATTACTCACTCACACAACATTATCCAAATTGAGAAATGAGTGGTTGTCCATCTTCAAACTTAAATCCCAACTCCTTCTCTCCATATTCCCATATCTAAATTATCGAAACCCCTCAACAAAAAATACTTAAACATAACCTCCAGAAAGGAAAGAAAAAACACACGAAATCAATCTACAAAACAAAAATACCAACAACAAAATCTTCACTCTCTCCTATAGCCTTTTCTTCTGTAATTTGAGTGCCAATGGCTTCTTCTTCCTCCTCCACATTCACTCTCTCTTCCTCCTCCACTCTCCTTGACTCCAAGGCGCCCCGTCAATCCGCTGCGCCATCATCGAATGTGCCGCTCCCCACTCTCCCACCACCACCGTCGCCGGCCCAAATTCGCCCTTGGAAGTCCGCTGCCTATTGTAAGAATTACGATGCACATTGTTTTGAGTTGATAAGTTTTGCATGGTTTCTTTTTTGTTAAATCACTATTGATTTTAAAAGTTGTCTCATCAATGAATTACGATAAATTTAATCTTTTATTCCTAATCTTAACAAGATTCTTCATTTTTAGGTCGGAAGATTGCTCGCAATGTAATGGCCATGGCAACGGGAGAAGTGCCAGCGGAAGTGGCTGCAGGGGAGCTGGCGGAGCTGCCGGAAATTATTAAAAAAGTTCAAGAAGCTGTATGCTAAAAAAAACCCATATAATAATTTTTATTTTTATTTTTTTTTTGTTTTTTGAGTTGTGTTTTAGATTGGCTTGGATTTTATTTGTCAGTGGGATAAGGTTGAAGATAAGTATGCAGTAAGTTCACTTGCAGTGTCTGGTTTTGTCGCACTTTGGGCCTCCGCCGGCGTTGTCTCGGTGAGTTATATGTGTGTCTATATGTTTGCTTATTTATTTGAAAAATTAATAATGGATTATATAATTAATTTAATATAAGCTTTAAGTGATGGGTGTTAAATTTAAGAAATGGGCAAAATTTTGTGGGATTTTTTTTGACAGGCAATTGATAGGCTTCCTCTAATCCCTGGCCTCCTTGAGCTTGTGGGCATTGGCTATTCTGGGGTAAGTTTTATTCAGTTTCTTTAAAATTCTTTCAATTGTTGAAAGAAAATAGGATTGTTAAACAGAATCGGATCGAAAATTGATTAAACTATACAAAATGCCTCAAATGTGTGTAACTGGTTTCAATTTTGGCTCGAATTTATGTATTTTCGTTTCAATTATCAAGATGTGTACATGACTTCAATCTTGGCTTTAATATACATAATTAGTTTCAATTTTAATGCTAATGTTTTAAAAAATTTCCGCTATAATTAAATTTGGTCAAAAATAGTGTTTTTTTCCTTCAAGATTCAGAGTAAAATTGAAACTTAGTTATGTAAATAAAGAGCGTTTTGTATGACTTAGCTTCGAAATAATGAATTGTTTTCCATGATTTCAAAAGGGTGTCTAAAATTTCTGTTTGATAATGAAATCTTTGTGCAGTGGTTTGCATACAAGTATCTAATTTTCAGACCAGACAGGTGAGTTCTAACATTGTTTAAGATTGCATGAATTTGTTTTTTTTTTTTGTTCCTTTTTATATTATTACATTTTATGGATTATTGCAGGGAAGCTTTGTTGCAAAAATTAAAGGAAACTTACAATGAGATAATAGGGAGCAGCTAAAAAAGTGTTCAAAGAAGGGATCATTTAATGCTCTGTGGCTAATAAGAGTTTAAAATTTGGTCTTCTTTTCAAGCAAATCTTTATTGCATCATGCAAGTATATTTGCATGAAAATGTAACTTCTTCCCCACCTTTTTTTCCATTTATTTTGTAATATCTAGCTAACTCAATCCCACTATACTTTATGCTTTTATTTTACTCTTAAGTGCTGTCAAATGATTGCAAATTCTTAACCACTTTTGAAAGCTAAACTTGGTCAGG TTCAATCTTCTCTCATTACTCACTCACACAACATTATCCAAATTGAGAAATGAGTGGTTGTCCATCTTCAAACTTAAATCCCAACTCCTTCTCTCCATATTCCCATATCTAAATTATCGAAACCCCTCAACAAAAAATACTTAAACATAACCTCCAGAAAGGAAAGAAAAAACACACGAAATCAATCTACAAAACAAAAATACCAACAACAAAATCTTCACTCTCTCCTATAGCCTTTTCTTCTGTAATTTGAGTGCCAATGGCTTCTTCTTCCTCCTCCACATTCACTCTCTCTTCCTCCTCCACTCTCCTTGACTCCAAGGCGCCCCGTCAATCCGCTGCGCCATCATCGAATGTGCCGCTCCCCACTCTCCCACCACCACCGTCGCCGGCCCAAATTCGCCCTTGGAAGTCCGCTGCCTATTGTCGGAAGATTGCTCGCAATGTAATGGCCATGGCAACGGGAGAAGTGCCAGCGGAAGTGGCTGCAGGGGAGCTGGCGGAGCTGCCGGAAATTATTAAAAAAGTTCAAGAAGCTTGGGATAAGGTTGAAGATAAGTATGCAGTAAGTTCACTTGCAGTGTCTGGTTTTGTCGCACTTTGGGCCTCCGCCGGCGTTGTCTCGGCAATTGATAGGCTTCCTCTAATCCCTGGCCTCCTTGAGCTTGTGGGCATTGGCTATTCTGGGTGGTTTGCATACAAGTATCTAATTTTCAGACCAGACAGGGAAGCTTTGTTGCAAAAATTAAAGGAAACTTACAATGAGATAATAGGGAGCAGCTAAAAAAGTGTTCAAAGAAGGGATCATTTAATGCTCTGTGGCTAATAAGAGTTTAAAATTTGGTCTTCTTTTCAAGCAAATCTTTATTGCATCATGCAAGTATATTTGCATGAAAATGTAACTTCTTCCCCACCTTTTTTTCCATTTATTTTGTAATATCTAGCTAACTCAATCCCACTATACTTTATGCTTTTATTTTACTCTTAAGTGCTGTCAAATGATTGCAAATTCTTAACCACTTTTGAAAGCTAAACTTGGTCAGG ATGGCTTCTTCTTCCTCCTCCACATTCACTCTCTCTTCCTCCTCCACTCTCCTTGACTCCAAGGCGCCCCGTCAATCCGCTGCGCCATCATCGAATGTGCCGCTCCCCACTCTCCCACCACCACCGTCGCCGGCCCAAATTCGCCCTTGGAAGTCCGCTGCCTATTGTCGGAAGATTGCTCGCAATGTAATGGCCATGGCAACGGGAGAAGTGCCAGCGGAAGTGGCTGCAGGGGAGCTGGCGGAGCTGCCGGAAATTATTAAAAAAGTTCAAGAAGCTTGGGATAAGGTTGAAGATAAGTATGCAGTAAGTTCACTTGCAGTGTCTGGTTTTGTCGCACTTTGGGCCTCCGCCGGCGTTGTCTCGGCAATTGATAGGCTTCCTCTAATCCCTGGCCTCCTTGAGCTTGTGGGCATTGGCTATTCTGGGTGGTTTGCATACAAGTATCTAATTTTCAGACCAGACAGGGAAGCTTTGTTGCAAAAATTAAAGGAAACTTACAATGAGATAATAGGGAGCAGCTAA MASSSSSTFTLSSSSTLLDSKAPRQSAAPSSNVPLPTLPPPPSPAQIRPWKSAAYCRKIARNVMAMATGEVPAEVAAGELAELPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLIPGLLELVGIGYSGWFAYKYLIFRPDREALLQKLKETYNEIIGSS Homology
BLAST of Tan0010543 vs. ExPASy Swiss-Prot
Match: Q8LCA1 (Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1B PE=1 SV=2) HSP 1 Score: 188.7 bits (478), Expect = 5.4e-47 Identity = 99/173 (57.23%), Postives = 130/173 (75.14%), Query Frame = 0
BLAST of Tan0010543 vs. ExPASy Swiss-Prot
Match: Q9M812 (Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1C PE=1 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 6.9e-18 Identity = 39/88 (44.32%), Postives = 62/88 (70.45%), Query Frame = 0
BLAST of Tan0010543 vs. ExPASy Swiss-Prot
Match: O04616 (Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1A PE=1 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 3.2e-15 Identity = 37/89 (41.57%), Postives = 59/89 (66.29%), Query Frame = 0
BLAST of Tan0010543 vs. ExPASy Swiss-Prot
Match: Q8LDD3 (Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1D PE=1 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 9.1e-10 Identity = 33/101 (32.67%), Postives = 59/101 (58.42%), Query Frame = 0
BLAST of Tan0010543 vs. ExPASy Swiss-Prot
Match: Q119Z5 (Glutamate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=gltX PE=3 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 6.1e-06 Identity = 22/55 (40.00%), Postives = 36/55 (65.45%), Query Frame = 0
BLAST of Tan0010543 vs. NCBI nr
Match: XP_038906765.1 (protein CURVATURE THYLAKOID 1B, chloroplastic [Benincasa hispida]) HSP 1 Score: 303.9 bits (777), Expect = 8.8e-79 Identity = 162/175 (92.57%), Postives = 170/175 (97.14%), Query Frame = 0
BLAST of Tan0010543 vs. NCBI nr
Match: XP_004140528.1 (protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis sativus] >KGN46474.1 hypothetical protein Csa_005298 [Cucumis sativus]) HSP 1 Score: 300.8 bits (769), Expect = 7.5e-78 Identity = 160/175 (91.43%), Postives = 168/175 (96.00%), Query Frame = 0
BLAST of Tan0010543 vs. NCBI nr
Match: XP_008459821.1 (PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis melo] >KAA0039802.1 protein CURVATURE THYLAKOID 1B [Cucumis melo var. makuwa] >TYK24695.1 protein CURVATURE THYLAKOID 1B [Cucumis melo var. makuwa]) HSP 1 Score: 297.7 bits (761), Expect = 6.3e-77 Identity = 162/176 (92.05%), Postives = 168/176 (95.45%), Query Frame = 0
BLAST of Tan0010543 vs. NCBI nr
Match: XP_022992417.1 (protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita maxima]) HSP 1 Score: 296.6 bits (758), Expect = 1.4e-76 Identity = 159/175 (90.86%), Postives = 167/175 (95.43%), Query Frame = 0
BLAST of Tan0010543 vs. NCBI nr
Match: XP_022929793.1 (protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita moschata] >XP_023547749.1 protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita pepo subsp. pepo] >KAG7013838.1 Protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 294.7 bits (753), Expect = 5.4e-76 Identity = 158/175 (90.29%), Postives = 165/175 (94.29%), Query Frame = 0
BLAST of Tan0010543 vs. ExPASy TrEMBL
Match: A0A0A0KCB7 (CAAD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G095900 PE=4 SV=1) HSP 1 Score: 300.8 bits (769), Expect = 3.6e-78 Identity = 160/175 (91.43%), Postives = 168/175 (96.00%), Query Frame = 0
BLAST of Tan0010543 vs. ExPASy TrEMBL
Match: A0A5A7T8Q0 (Protein CURVATURE THYLAKOID 1B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002480 PE=4 SV=1) HSP 1 Score: 297.7 bits (761), Expect = 3.1e-77 Identity = 162/176 (92.05%), Postives = 168/176 (95.45%), Query Frame = 0
BLAST of Tan0010543 vs. ExPASy TrEMBL
Match: A0A1S3CCA4 (protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498834 PE=4 SV=1) HSP 1 Score: 297.7 bits (761), Expect = 3.1e-77 Identity = 162/176 (92.05%), Postives = 168/176 (95.45%), Query Frame = 0
BLAST of Tan0010543 vs. ExPASy TrEMBL
Match: A0A6J1JPR9 (protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111488730 PE=4 SV=1) HSP 1 Score: 296.6 bits (758), Expect = 6.8e-77 Identity = 159/175 (90.86%), Postives = 167/175 (95.43%), Query Frame = 0
BLAST of Tan0010543 vs. ExPASy TrEMBL
Match: A0A6J1ET79 (protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111436295 PE=4 SV=1) HSP 1 Score: 294.7 bits (753), Expect = 2.6e-76 Identity = 158/175 (90.29%), Postives = 165/175 (94.29%), Query Frame = 0
BLAST of Tan0010543 vs. TAIR 10
Match: AT2G46820.1 (photosystem I P subunit ) HSP 1 Score: 188.7 bits (478), Expect = 3.9e-48 Identity = 99/173 (57.23%), Postives = 130/173 (75.14%), Query Frame = 0
BLAST of Tan0010543 vs. TAIR 10
Match: AT2G46820.2 (photosystem I P subunit ) HSP 1 Score: 188.7 bits (478), Expect = 3.9e-48 Identity = 99/173 (57.23%), Postives = 130/173 (75.14%), Query Frame = 0
BLAST of Tan0010543 vs. TAIR 10
Match: AT1G52220.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 291 Blast hits to 291 proteins in 50 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). ) HSP 1 Score: 92.0 bits (227), Expect = 4.9e-19 Identity = 39/88 (44.32%), Postives = 62/88 (70.45%), Query Frame = 0
BLAST of Tan0010543 vs. TAIR 10
Match: AT1G52220.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 87.4 bits (215), Expect = 1.2e-17 Identity = 39/88 (44.32%), Postives = 62/88 (70.45%), Query Frame = 0
BLAST of Tan0010543 vs. TAIR 10
Match: AT4G01150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). ) HSP 1 Score: 83.2 bits (204), Expect = 2.3e-16 Identity = 37/89 (41.57%), Postives = 59/89 (66.29%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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