Carg04996 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04996
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Fcf2 domain-containing protein
Location	Carg_Chr08: 906042 .. 909331 (-)
RNA-Seq Expression	Carg04996
Synteny	Carg04996

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTCATTCTGAAAATTGAAATTGTTTCCCTCAATTAACCAATACAATATCCAATAATACATCGGATTTATAGAACTAAGAGCATGAATCCAGACATTTTTTTTTTATTGGAATGCGAATCTATCATTGTATGAAGCTCAAACCTGATTAAAACTTGAGTCCAGACATATTTTTCAATTATTCATTAGGAGTAATCAATTAAACGGTAATGAACCAACTGTGTTTTATTAATGTGGATTATTTTTCTTCCGTTAGTTGCAATTGACTGGTTAATTTCAGAAATTAAGACAGAAGGGTACACGATTTAGCACAAAAAAATTCCCCCTTATTCTGCATTTTATACTATAGATATAGATGTCAATAGAATTAATTGGATTATATGTTTAGAGCACCAATTAATAAATTTTCTTAACTAGTACAGTTTTAAGTGTTGTTTGAACTAAGGCTGATTGAAATTTTCTTATATTTTGTAGATGTCAGGAAAAAAGCCTGTCATTAGCCTTTCTTGGGAGCCAAAGCTGCCCACCTCGTCGTCAGGGATCAAAACCAAGGCTTGTGACAAATCTCACAGTCAAGCGGAAAATGGTCTTGTTTGGAAAAACAATTCAGAGCTTGTGGATGGGCTGTTTGTTCCCCCAAACAACCCAAAAAAGTTGAATAAGTTATTGAGAAAGCAAGTTAGTGACACGGCTGGGAGGAGTTGGTATATATGCTCTTTTCATATGAAATTTCAATAGTTTCAGTTTTACCATTGATTCCTGGAGAATCAATGAAGGCACTTTTACTCCTTTCACATGGTTTTAATCTTATTTGAATGTTTATTATTTTTATTTTTAACTTCATTGGTTGTGGTACCTTGCTGGACACCATCAGTTTATTAACATAGTAGTTGAAGTTCTATATTCTAATACTCATACGCTTGTTATTGTAACTAGGTTTGACATGCCAGCACAAACCATGACCCCTGAAATGGAAAAAGATTTGCGCTTGTTGAAGGTGAGGATGTCTTTGATGTATTATCCACACTCTCATTAGTTTTGTATTCCACATAGTTTGGACTGTTATATAGAAACTGGTTACTTTCACCATGGATCGAGAGTTGTAATCATGCTAAAGAGCTCTGCAGTTGTGATATGGGCATGGCGTGTGTGTTCTTATTCATCTCTGGTTCCAAGATTCAATATTCTTCTAGAACTAGAACACTGCAGATGGGCATGACTTGTGTGTTCTTATTCATCTTTGGTTCCAAGATTCAATATTCTTCTAGAACTAGGACAATGGATATATATGATTGCTATGATGCATGTAATGACTAATTAGAATGTCATGTTTCTACGTATTTTATTTGTTGGGGTCATATAGAGAAATAATAATATGCTTTGATGCACATGAAACATATATTCTAGTACTTAGGGAATTATTTCAATCCCATATTGGCCACCTATCTAGAATTTAATATCCTACAAATTATCTGGACAACCAAATATAGTAGGGTCAAGTGGTTGTCCTTTGGTGGTTGTCCTTTGGAAGTAGTCAAGTTGCCAAGTTTGCTTGGACACCCATGGATATCACCAAAAAAAAAAAAAAAACATTTTGATGCCACATGAAACATATATTTTCAATTCGCAATTTACTAGTACTTGACCAAGTTGTTTCAAGTTCATAGGATTGTTCGAGGGATGGATAGGTCTCCGTGCGACGTTTTCTCTTGTTAGATTCTATGTTTCTCTTTGGGTTCTGGCGATGAAGCTGTTTTGTAATTATCCTTTAGATATTATTTTGCTTGATTGGAGGCCTTTCTTGTAGTTTGCCCCCTTTTATGGGCTTTATCTTTTGTGTGCTCCTGTATTCATTCATTTTTACTAACCGGAAGCTTAGTTTCTTATTAGAAAAATACTATACTTTCTATACTAAGTTGTTGAAACGCGAAATTGGATGTCAGAGTGTGTTGGGCTAGTTTGAGTAGGTAGATTAATTTTTCACCATTGCATCTGTGGTCATGAATCTGTGAAAGAAAAGCATAGTTACGTAGATATTCAACTTATAGGATAATATTTACCAGTGGTTGATTTGAATGGCCCATCTCTATGTGTTTATTATCATCCAATATCTATGAACTCGGAAAATTTCTGTTTGATTGACTTCTGCTGCGTCCTTATTTCTCTTGATGATTATAGCTGAGGAGCGTCATTGATCCCAAGAGACACTACAAGAAGGGTGATTCGAAATCAAAAACACTTCCCAAGTATTTCCAGGCAAGCTTTTAGTTTCACGAAATCAACTCATTTTATACGCGAGCAAAAGTTAAATTTTCTCAGTAAACAATATGTCCAGTGTTAATATTTGCTCTAGACTTATTTTGAGTTTTAAGCATTTACCAGGTAGGAACTGTGGTCGAGTCTTCTTTGGACTTCTTCTCGGGTAGATTAACAAAGAAGGAGAGGAAAGCAACGCTTGCCGACGAACTGCTTTCCGACCAGGCCCTCACTCAGTACAGGTTTGATCTTTATCACATTCTCTTGCTATAGCAAAATTTTCCAGTGAAGGAAAAGAAATGGGGGAATATATGGCTATCCATTTTGAAATCTACTTGTTATCTGTTTTATGATATGGTTGCTTCTTTGAATCACTTGGACGAGGAACATTGTAAAGTGCATTCTAATGCAACATTGGTGGAGCATGTGCTTAATTTACGAAGCGTTCCTATACAGTCTTGATCAGTTCTTCCATTCGTTCACTTCCAGATTTTGAAAATTGCTTCGTCTTTTAAGTTGAATGTAATGCTTCTTGTGCATTGTTTAGCGTTTTGTTCTGCTTATATCCTTCTGAAAAACCTCTTGCAGAAAACGCAAAGTTCAAGAAATCGAAGAGCAGAATCGACCAGGTGGAAACGACAAGTGGAAAATAAGGGGTCGTCAATCACGAAAACGGGCAAAGGAAAGGAGGAATTAGGTAAGTTGCCTCAAATTTTTCACTAGTAAACCAGATGAGCACCACTAGATCAGATCAAGTTAAGTGATGGGGATTTTGATCATTGGCTTATTAGGTGAAATCCAGCAAATATTTTATGTATACTCTGTAGACTGAGCTGACTAAGAACTCAAGTTTAAACTATTTTTGGCTATTGAATTGATGATGTGTATTAGGAGTAGAAGTGTTCTTCAGGCTAAGTTATGAAAACCTGTAACTGATGAAAATGGTGTTTATTTATCACCGAGGAAAACAACGTATTCTTGTTCCACTGGTTTCATATGTCAAATTTAATGGCAACCCACATATGTCATATTCC

mRNA sequence

TTTTTCATTCTGAAAATTGAAATTGTTTCCCTCAATTAACCAATACAATATCCAATAATACATCGGATTTATAGAACTAAGAGCATGAATCCAGACATTTTTTTTTTATTGGAATGCGAATCTATCATTGTATGAAGCTCAAACCTGATTAAAACTTGAGTCCAGACATATTTTTCAATTATTCATTAGGAGTAATCAATTAAACGGTAATGAACCAACTGTGTTTTATTAATGTGGATTATTTTTCTTCCGTTAGTTGCAATTGACTGGTTAATTTCAGAAATTAAGACAGAAGGGTACACGATTTAGCACAAAAAAATTCCCCCTTATTCTGCATTTTATACTATAGATATAGATGTCAATAGAATTAATTGGATTATATGTTTAGAGCACCAATTAATAAATTTTCTTAACTAGTACAGTTTTAAGTGTTGTTTGAACTAAGGCTGATTGAAATTTTCTTATATTTTGTAGATGTCAGGAAAAAAGCCTGTCATTAGCCTTTCTTGGGAGCCAAAGCTGCCCACCTCGTCGTCAGGGATCAAAACCAAGGCTTGTGACAAATCTCACAGTCAAGCGGAAAATGGTCTTGTTTGGAAAAACAATTCAGAGCTTGTGGATGGGCTGTTTGTTCCCCCAAACAACCCAAAAAAGTTGAATAAGTTATTGAGAAAGCAAGTTAGTGACACGGCTGGGAGGAGTTGGTTTGACATGCCAGCACAAACCATGACCCCTGAAATGGAAAAAGATTTGCGCTTGTTGAAGCTGAGGAGCGTCATTGATCCCAAGAGACACTACAAGAAGGGTGATTCGAAATCAAAAACACTTCCCAAGTATTTCCAGGCAAGCTTTTACATTTACCAGGTAGGAACTGTGGTCGAGTCTTCTTTGGACTTCTTCTCGGGTAGATTAACAAAGAAGGAGAGGAAAGCAACGCTTGCCGACGAACTGCTTTCCGACCAGGCCCTCACTCAGTACAGAAAACGCAAAGTTCAAGAAATCGAAGAGCAGAATCGACCAGGTGGAAACGACAAGTGGAAAATAAGGGGTCGTCAATCACGAAAACGGGCAAAGGAAAGGAGGAATTAGGTAAGTTGCCTCAAATTTTTCACTAGTAAACCAGATGAGCACCACTAGATCAGATCAAGTTAAGTGATGGGGATTTTGATCATTGGCTTATTAGGTGAAATCCAGCAAATATTTTATGTATACTCTGTAGACTGAGCTGACTAAGAACTCAAGTTTAAACTATTTTTGGCTATTGAATTGATGATGTGTATTAGGAGTAGAAGTGTTCTTCAGGCTAAGTTATGAAAACCTGTAACTGATGAAAATGGTGTTTATTTATCACCGAGGAAAACAACGTATTCTTGTTCCACTGGTTTCATATGTCAAATTTAATGGCAACCCACATATGTCATATTCC

Coding sequence (CDS)

ATGTCAGGAAAAAAGCCTGTCATTAGCCTTTCTTGGGAGCCAAAGCTGCCCACCTCGTCGTCAGGGATCAAAACCAAGGCTTGTGACAAATCTCACAGTCAAGCGGAAAATGGTCTTGTTTGGAAAAACAATTCAGAGCTTGTGGATGGGCTGTTTGTTCCCCCAAACAACCCAAAAAAGTTGAATAAGTTATTGAGAAAGCAAGTTAGTGACACGGCTGGGAGGAGTTGGTTTGACATGCCAGCACAAACCATGACCCCTGAAATGGAAAAAGATTTGCGCTTGTTGAAGCTGAGGAGCGTCATTGATCCCAAGAGACACTACAAGAAGGGTGATTCGAAATCAAAAACACTTCCCAAGTATTTCCAGGCAAGCTTTTACATTTACCAGGTAGGAACTGTGGTCGAGTCTTCTTTGGACTTCTTCTCGGGTAGATTAACAAAGAAGGAGAGGAAAGCAACGCTTGCCGACGAACTGCTTTCCGACCAGGCCCTCACTCAGTACAGAAAACGCAAAGTTCAAGAAATCGAAGAGCAGAATCGACCAGGTGGAAACGACAAGTGGAAAATAAGGGGTCGTCAATCACGAAAACGGGCAAAGGAAAGGAGGAATTAG

Protein sequence

MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQAENGLVWKNNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPKYFQASFYIYQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRPGGNDKWKIRGRQSRKRAKERRN

Homology

[Close]

BLAST of Carg04996 vs. NCBI nr
Match: KAG7025366.1 (fcf2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 400.6 bits (1028), Expect = 8.1e-108
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQAENGLVWKNNSELVDGLFVPPNNPKK 60
           MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQAENGLVWKNNSELVDGLFVPPNNPKK
Sbjct: 1   MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQAENGLVWKNNSELVDGLFVPPNNPKK 60

Query: 61  LNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120
           LNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK
Sbjct: 61  LNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120

Query: 121 YFQASFYIYQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQN 180
           YFQASFYIYQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQN
Sbjct: 121 YFQASFYIYQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQN 180

Query: 181 RPGGNDKWKIRGRQSRKRAKERRN 205
           RPGGNDKWKIRGRQSRKRAKERRN
Sbjct: 181 RPGGNDKWKIRGRQSRKRAKERRN 204

[Close]

BLAST of Carg04996 vs. NCBI nr
Match: KAG6592956.1 (hypothetical protein SDJN03_12432, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 379.8 bits (974), Expect = 1.5e-101
Identity = 197/204 (96.57%), Postives = 197/204 (96.57%), Query Frame = 0


Query: 1   MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQAENGLVWKNNSELVDGLFVPPNNPKK 60
           MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQAENGLVWKNNSELVDGLFVPPNNPKK
Sbjct: 1   MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQAENGLVWKNNSELVDGLFVPPNNPKK 60

Query: 61  LNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120
           LNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK
Sbjct: 61  LNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120

Query: 121 YFQASFYIYQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQN 180
           YF       QVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQN
Sbjct: 121 YF-------QVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQN 180

Query: 181 RPGGNDKWKIRGRQSRKRAKERRN 205
           RPGGNDKWKIRGRQSRKRAKERRN
Sbjct: 181 RPGGNDKWKIRGRQSRKRAKERRN 197

[Close]

BLAST of Carg04996 vs. NCBI nr
Match: XP_023005116.1 (rRNA-processing protein fcf2-like [Cucurbita maxima])

HSP 1 Score: 378.3 bits (970), Expect = 4.3e-101
Identity = 196/204 (96.08%), Postives = 197/204 (96.57%), Query Frame = 0


Query: 1   MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQAENGLVWKNNSELVDGLFVPPNNPKK 60
           MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQAENGLVWKNNSELVDGLFVPPNNPKK
Sbjct: 2   MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQAENGLVWKNNSELVDGLFVPPNNPKK 61

Query: 61  LNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120
           LNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK
Sbjct: 62  LNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 121

Query: 121 YFQASFYIYQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQN 180
           YF       QVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQN
Sbjct: 122 YF-------QVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQN 181

Query: 181 RPGGNDKWKIRGRQSRKRAKERRN 205
           RPGGNDKWKIRGRQS+KRAKERRN
Sbjct: 182 RPGGNDKWKIRGRQSQKRAKERRN 198

[Close]

BLAST of Carg04996 vs. NCBI nr
Match: XP_023515315.1 (rRNA-processing protein fcf2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 377.5 bits (968), Expect = 7.4e-101
Identity = 196/204 (96.08%), Postives = 196/204 (96.08%), Query Frame = 0


Query: 1   MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQAENGLVWKNNSELVDGLFVPPNNPKK 60
           MSGKKPVISLSWEPKLPTSSSG KTKACDKSHSQAENGLVWKNNSELVDGLFVPPNNPKK
Sbjct: 1   MSGKKPVISLSWEPKLPTSSSGSKTKACDKSHSQAENGLVWKNNSELVDGLFVPPNNPKK 60

Query: 61  LNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120
           LNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK
Sbjct: 61  LNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120

Query: 121 YFQASFYIYQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQN 180
           YF       QVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQN
Sbjct: 121 YF-------QVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQN 180

Query: 181 RPGGNDKWKIRGRQSRKRAKERRN 205
           RPGGNDKWKIRGRQSRKRAKERRN
Sbjct: 181 RPGGNDKWKIRGRQSRKRAKERRN 197

[Close]

BLAST of Carg04996 vs. NCBI nr
Match: XP_022960049.1 (rRNA-processing protein fcf2-like [Cucurbita moschata])

HSP 1 Score: 375.9 bits (964), Expect = 2.1e-100
Identity = 195/204 (95.59%), Postives = 196/204 (96.08%), Query Frame = 0


Query: 1   MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQAENGLVWKNNSELVDGLFVPPNNPKK 60
           MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQA NGLVWKNNSELVDGLFVPPNNPKK
Sbjct: 1   MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQAGNGLVWKNNSELVDGLFVPPNNPKK 60

Query: 61  LNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120
           LNKLLRKQVSDTAGR+WFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK
Sbjct: 61  LNKLLRKQVSDTAGRNWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120

Query: 121 YFQASFYIYQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQN 180
           YF       QVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQN
Sbjct: 121 YF-------QVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQN 180

Query: 181 RPGGNDKWKIRGRQSRKRAKERRN 205
           RPGGNDKWKIRGRQSRKRAKERRN
Sbjct: 181 RPGGNDKWKIRGRQSRKRAKERRN 197

[Close]

BLAST of Carg04996 vs. ExPASy Swiss-Prot
Match: O42877 (rRNA-processing protein fcf2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=fcf2 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 7.1e-22
Identity = 56/132 (42.42%), Postives = 87/132 (65.91%), Query Frame = 0


Query: 66  RKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPKYFQAS 125
           +K + DTAG +WFDMPA  +T  +++D++LLK+R+ +DPKRHY++ ++KS  +PKYF   
Sbjct: 104 KKNIKDTAGSNWFDMPATELTESVKRDIQLLKMRNALDPKRHYRRENTKS--MPKYF--- 163

Query: 126 FYIYQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRPGGN 185
               QVG++VE   DF+S R+  +ERK T+ DELL D     Y K+K  E+++    G  
Sbjct: 164 ----QVGSIVEGPQDFYSSRIPTRERKETIVDELLHDSERRSYFKKKYLELQKSKMSGRK 223

Query: 186 DKWKIRGRQSRK 198
            ++K + +Q RK
Sbjct: 224 GQYK-KLQQRRK 225

[Close]

BLAST of Carg04996 vs. ExPASy Swiss-Prot
Match: Q5QJE6 (Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Homo sapiens OX=9606 GN=DNTTIP2 PE=1 SV=2)

HSP 1 Score: 97.4 bits (241), Expect = 1.9e-19
Identity = 61/152 (40.13%), Postives = 85/152 (55.92%), Query Frame = 0


Query: 53  VPPNNPKK--LNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKK 112
           VPP +  K  L K  RK+   TAG  WF M A  MT E++ DL+ LK+R+ +DPKR YKK
Sbjct: 619 VPPYSESKYQLQKKRRKERQKTAGDGWFGMKAPEMTNELKNDLKALKMRASMDPKRFYKK 678

Query: 113 GDSKSKTLPKYFQASFYIYQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRK 172
            D      PKYF       Q+GT+V++  DF+  R+ KK+RK T+ +ELL+D    +Y +
Sbjct: 679 NDRDG--FPKYF-------QIGTIVDNPADFYHSRIPKKQRKRTIVEELLADSEFRRYNR 738

Query: 173 RKVQEIEEQNRPGGNDKWKIRGRQSRKRAKER 203
           RK  EI  +            G++ RK+ K R
Sbjct: 739 RKYSEIMAEKAANA------AGKKFRKKKKFR 755

[Close]

BLAST of Carg04996 vs. ExPASy Swiss-Prot
Match: Q8R2M2 (Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Mus musculus OX=10090 GN=Dnttip2 PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.3e-19
Identity = 60/152 (39.47%), Postives = 85/152 (55.92%), Query Frame = 0


Query: 53  VPPNNPKK--LNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKK 112
           VPP +  K  L K  RK+   TAG  WF M A  +T E++ DLR LK+R+ +DPKR YKK
Sbjct: 621 VPPYSESKHRLQKQRRKERQKTAGNGWFGMKAPELTDELKNDLRALKMRAGMDPKRFYKK 680

Query: 113 GDSKSKTLPKYFQASFYIYQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRK 172
            D      PKYF       QVGT+V++  DF+  R+ KK+RK T+ +ELL+D    ++ +
Sbjct: 681 NDRDG--FPKYF-------QVGTIVDNPADFYHSRIPKKQRKKTIVEELLADSEFRRFNR 740

Query: 173 RKVQEIEEQNRPGGNDKWKIRGRQSRKRAKER 203
           RK  EI  +            G++ +K+ K R
Sbjct: 741 RKYSEIMAEKAANA------EGKKFKKKKKFR 757

[Close]

BLAST of Carg04996 vs. ExPASy Swiss-Prot
Match: Q0P5H2 (Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Bos taurus OX=9913 GN=DNTTIP2 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-18
Identity = 59/152 (38.82%), Postives = 85/152 (55.92%), Query Frame = 0


Query: 53  VPP--NNPKKLNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKK 112
           VPP   +  KL K  R++   TAG  WF M A  +T E++ DL+ LK+R+ +DPKR YKK
Sbjct: 629 VPPYSESKYKLQKKRRQERQKTAGDGWFGMKAPELTDELKNDLKALKMRASMDPKRFYKK 688

Query: 113 GDSKSKTLPKYFQASFYIYQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRK 172
            D      PKYF       Q+GT+V++  DF+  R+ KK+RK T+ +ELL+D    +Y +
Sbjct: 689 NDRDG--FPKYF-------QIGTIVDNPADFYHSRVPKKQRKRTIVEELLADSEFRRYNR 748

Query: 173 RKVQEIEEQNRPGGNDKWKIRGRQSRKRAKER 203
           RK  EI  +            G++ RK+ K R
Sbjct: 749 RKYSEIMAEKAANA------AGKKFRKKKKFR 765

[Close]

BLAST of Carg04996 vs. ExPASy Swiss-Prot
Match: Q12035 (rRNA-processing protein FCF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=FCF2 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.2e-14
Identity = 55/167 (32.93%), Postives = 85/167 (50.90%), Query Frame = 0


Query: 42  KNNSELVDGLFVPPNNPKKLNKL--------LRKQVSDTAGRSWFDMPA--QTMTPEMEK 101
           K   +L  G     N  KK N L         +   SD     WF +P     M  E+++
Sbjct: 60  KKLPKLETGFDALANKKKKKNVLPSVETEDKRKPNKSDKNDNDWFTLPKPDDNMRREVQR 119

Query: 102 DLRLLKLRSVIDPKRHYKKGDSKSKTLPKYFQASFYIYQVGTVVESSLDFFSGRLTKKER 161
           DL L+K R+ +DPKRHYKK   +   +P+ F        +GT++E   +F+S R+ +KER
Sbjct: 120 DLLLIKHRAALDPKRHYKK---QRWEVPERF-------AIGTIIEDKSEFYSSRMNRKER 179

Query: 162 KATLADELLSDQALTQYRKRKVQEIEEQNRPGGNDKWKIRGRQSRKR 199
           K+T+ + L+ D+A  +Y KRK  EI+E++  G    +K      +KR
Sbjct: 180 KSTILETLMGDEASNKYFKRKYNEIQEKSTSGRKAHYKKMKEMRKKR 216

[Close]

BLAST of Carg04996 vs. ExPASy TrEMBL
Match: A0A6J1KU17 (rRNA-processing protein fcf2-like OS=Cucurbita maxima OX=3661 GN=LOC111498206 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 2.1e-101
Identity = 196/204 (96.08%), Postives = 197/204 (96.57%), Query Frame = 0


Query: 1   MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQAENGLVWKNNSELVDGLFVPPNNPKK 60
           MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQAENGLVWKNNSELVDGLFVPPNNPKK
Sbjct: 2   MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQAENGLVWKNNSELVDGLFVPPNNPKK 61

Query: 61  LNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120
           LNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK
Sbjct: 62  LNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 121

Query: 121 YFQASFYIYQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQN 180
           YF       QVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQN
Sbjct: 122 YF-------QVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQN 181

Query: 181 RPGGNDKWKIRGRQSRKRAKERRN 205
           RPGGNDKWKIRGRQS+KRAKERRN
Sbjct: 182 RPGGNDKWKIRGRQSQKRAKERRN 198

[Close]

BLAST of Carg04996 vs. ExPASy TrEMBL
Match: A0A6J1H9T2 (rRNA-processing protein fcf2-like OS=Cucurbita moschata OX=3662 GN=LOC111460917 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 1.0e-100
Identity = 195/204 (95.59%), Postives = 196/204 (96.08%), Query Frame = 0


Query: 1   MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQAENGLVWKNNSELVDGLFVPPNNPKK 60
           MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQA NGLVWKNNSELVDGLFVPPNNPKK
Sbjct: 1   MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQAGNGLVWKNNSELVDGLFVPPNNPKK 60

Query: 61  LNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120
           LNKLLRKQVSDTAGR+WFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK
Sbjct: 61  LNKLLRKQVSDTAGRNWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120

Query: 121 YFQASFYIYQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQN 180
           YF       QVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQN
Sbjct: 121 YF-------QVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQN 180

Query: 181 RPGGNDKWKIRGRQSRKRAKERRN 205
           RPGGNDKWKIRGRQSRKRAKERRN
Sbjct: 181 RPGGNDKWKIRGRQSRKRAKERRN 197

[Close]

BLAST of Carg04996 vs. ExPASy TrEMBL
Match: A0A1S3CB58 (rRNA-processing protein fcf2 OS=Cucumis melo OX=3656 GN=LOC103498854 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 9.4e-94
Identity = 180/204 (88.24%), Postives = 191/204 (93.63%), Query Frame = 0


Query: 1   MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQAENGLVWKNNSELVDGLFVPPNNPKK 60
           MS +KP+I LSWEPKLP SSSGIKTK CDKS++QAENG+VWK+NSELVDGLFVPPNNPKK
Sbjct: 1   MSERKPIIGLSWEPKLPASSSGIKTKTCDKSNNQAENGIVWKSNSELVDGLFVPPNNPKK 60

Query: 61  LNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120
           LNKLLRKQVSDTAGR+WFDMPA+TMTPE+EKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK
Sbjct: 61  LNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120

Query: 121 YFQASFYIYQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQN 180
           YF       QVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKV+EIEEQN
Sbjct: 121 YF-------QVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEEQN 180

Query: 181 RPGGNDKWKIRGRQSRKRAKERRN 205
           RPGGNDKWKIRG  SRKRAK+RRN
Sbjct: 181 RPGGNDKWKIRGNHSRKRAKDRRN 197

[Close]

BLAST of Carg04996 vs. ExPASy TrEMBL
Match: A0A0A0K9M7 (Fcf2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G094730 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 2.7e-93
Identity = 181/204 (88.73%), Postives = 189/204 (92.65%), Query Frame = 0


Query: 1   MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQAENGLVWKNNSELVDGLFVPPNNPKK 60
           MS  KP+I LSWEPKLP SSSGIK K CDKS+SQAENGLVWK+NSELVDGLFVPPNNPKK
Sbjct: 1   MSKGKPIIGLSWEPKLPASSSGIKAKTCDKSNSQAENGLVWKSNSELVDGLFVPPNNPKK 60

Query: 61  LNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120
           LNKLLRKQVSDTAGR+WFDMPA+TMTPE+EKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK
Sbjct: 61  LNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120

Query: 121 YFQASFYIYQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQN 180
           YF       QVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKV+EIEEQN
Sbjct: 121 YF-------QVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEEQN 180

Query: 181 RPGGNDKWKIRGRQSRKRAKERRN 205
           RPGGNDKWKIRG  SRKRAK+RRN
Sbjct: 181 RPGGNDKWKIRGHHSRKRAKDRRN 197

[Close]

BLAST of Carg04996 vs. ExPASy TrEMBL
Match: A0A6J1DMD6 (rRNA-processing protein fcf2 OS=Momordica charantia OX=3673 GN=LOC111022552 PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.4e-92
Identity = 182/204 (89.22%), Postives = 186/204 (91.18%), Query Frame = 0


Query: 1   MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQAENGLVWKNNSELVDGLFVPPNNPKK 60
           MS KKPVI LSWEPKL TSSSGIKTK CDKSH Q E+ LVWK N+ELVDGLFVPPNNPKK
Sbjct: 1   MSEKKPVIGLSWEPKLATSSSGIKTKTCDKSHIQPESSLVWKTNTELVDGLFVPPNNPKK 60

Query: 61  LNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120
           LNKLLRKQVSDTAGRSWFDMPAQTMTPE+EKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK
Sbjct: 61  LNKLLRKQVSDTAGRSWFDMPAQTMTPELEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120

Query: 121 YFQASFYIYQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQN 180
           YF       QVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKV+EIEE N
Sbjct: 121 YF-------QVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEELN 180

Query: 181 RPGGNDKWKIRGRQSRKRAKERRN 205
           RP GNDKWKIRGR SRKRAKERRN
Sbjct: 181 RPAGNDKWKIRGRHSRKRAKERRN 197

[Close]

BLAST of Carg04996 vs. TAIR 10
Match: AT5G30495.2 (Fcf2 pre-rRNA processing protein )

HSP 1 Score: 211.1 bits (536), Expect = 8.5e-55
Identity = 115/207 (55.56%), Postives = 152/207 (73.43%), Query Frame = 0


Query: 1   MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQA---ENGLVWKNNSELVDGLFVPPNN 60
           M+  KP+I L+WEPKLP  S  + TK C  S  +    E+  +W + SELVDGL +PPN+
Sbjct: 1   MAETKPLIGLTWEPKLPGLS--LDTKTCSTSSKRVESHESSSLWMSKSELVDGLCLPPND 60

Query: 61  PKKLNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKT 120
           PKK+NK++RKQ+ DT G +WFDMPA TMTPE+++DL+LLKLR+V+DP  HYKK  S+SK 
Sbjct: 61  PKKINKMIRKQIKDTTGSNWFDMPAPTMTPELKRDLQLLKLRTVMDPAVHYKKSVSRSKL 120

Query: 121 LPKYFQASFYIYQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIE 180
             KYF       Q+GTV+E + +F+ GRLTKK RKATLADEL+SD  ++QYRKRKV+EIE
Sbjct: 121 AEKYF-------QIGTVIEPAEEFY-GRLTKKNRKATLADELVSDPKVSQYRKRKVKEIE 180

Query: 181 EQNRPGGNDKWKIRGRQSRKRAKERRN 205
           E++R   N KWK +G Q+  + K+RRN
Sbjct: 181 EKSRAVTNKKWKKKGNQTTNK-KQRRN 196

[Close]

BLAST of Carg04996 vs. TAIR 10
Match: AT5G30495.1 (Fcf2 pre-rRNA processing protein )

HSP 1 Score: 211.1 bits (536), Expect = 8.5e-55
Identity = 115/207 (55.56%), Postives = 152/207 (73.43%), Query Frame = 0


Query: 1   MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQA---ENGLVWKNNSELVDGLFVPPNN 60
           M+  KP+I L+WEPKLP  S  + TK C  S  +    E+  +W + SELVDGL +PPN+
Sbjct: 1   MAETKPLIGLTWEPKLPGLS--LDTKTCSTSSKRVESHESSSLWMSKSELVDGLCLPPND 60

Query: 61  PKKLNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKT 120
           PKK+NK++RKQ+ DT G +WFDMPA TMTPE+++DL+LLKLR+V+DP  HYKK  S+SK 
Sbjct: 61  PKKINKMIRKQIKDTTGSNWFDMPAPTMTPELKRDLQLLKLRTVMDPAVHYKKSVSRSKL 120

Query: 121 LPKYFQASFYIYQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIE 180
             KYF       Q+GTV+E + +F+ GRLTKK RKATLADEL+SD  ++QYRKRKV+EIE
Sbjct: 121 AEKYF-------QIGTVIEPAEEFY-GRLTKKNRKATLADELVSDPKVSQYRKRKVKEIE 180

Query: 181 EQNRPGGNDKWKIRGRQSRKRAKERRN 205
           E++R   N KWK +G Q+  + K+RRN
Sbjct: 181 EKSRAVTNKKWKKKGNQTTNK-KQRRN 196

[Close]

BLAST of Carg04996 vs. TAIR 10
Match: AT1G54770.1 (Fcf2 pre-rRNA processing protein )

HSP 1 Score: 196.4 bits (498), Expect = 2.2e-50
Identity = 109/201 (54.23%), Postives = 142/201 (70.65%), Query Frame = 0


Query: 4   KKPVISLSWEPKLPTSSSGIKTKACDKSHSQAENGLVWKNNSELVDGLFVPPNNPKKLNK 63
           K+P+I L WEPKLP  S  +KT +     +++       + SELVDGL +PPN+P+K+NK
Sbjct: 5   KQPLIGLKWEPKLPGLSLDLKTGSTRSKTAES-------SKSELVDGLCLPPNDPRKINK 64

Query: 64  LLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPKYFQ 123
           ++RKQ+ DT G +WFDMPA TMTPE+++DL+LLKLR+V+DP  HYKK  S+SK   KYF 
Sbjct: 65  MIRKQLKDTTGSNWFDMPAPTMTPELKRDLQLLKLRTVMDPALHYKKSVSRSKLAEKYF- 124

Query: 124 ASFYIYQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRPG 183
                 Q+GTV+E + +F+ GRLTKK RKATLADEL+SD     YRKRKV+EIEE++R  
Sbjct: 125 ------QIGTVIEPAEEFY-GRLTKKNRKATLADELVSDPKTALYRKRKVREIEEKSRAV 184

Query: 184 GNDKWKIRGRQSRKRAKERRN 205
            N KW  +G QS K  K RRN
Sbjct: 185 TNKKWNKKGNQS-KNTKPRRN 189

The following BLAST results are available for this feature:

BLAST of Carg04996 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025366.1	8.1e-108	100.00	fcf2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6592956.1	1.5e-101	96.57	hypothetical protein SDJN03_12432, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023005116.1	4.3e-101	96.08	rRNA-processing protein fcf2-like [Cucurbita maxima]	[more]
XP_023515315.1	7.4e-101	96.08	rRNA-processing protein fcf2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022960049.1	2.1e-100	95.59	rRNA-processing protein fcf2-like [Cucurbita moschata]	[more]

BLAST of Carg04996 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O42877	7.1e-22	42.42	rRNA-processing protein fcf2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
Q5QJE6	1.9e-19	40.13	Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Homo sapiens OX=96...	[more]
Q8R2M2	4.3e-19	39.47	Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Mus musculus OX=10...	[more]
Q0P5H2	1.3e-18	38.82	Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Bos taurus OX=9913...	[more]
Q12035	4.2e-14	32.93	rRNA-processing protein FCF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S...	[more]

BLAST of Carg04996 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KU17	2.1e-101	96.08	rRNA-processing protein fcf2-like OS=Cucurbita maxima OX=3661 GN=LOC111498206 PE...	[more]
A0A6J1H9T2	1.0e-100	95.59	rRNA-processing protein fcf2-like OS=Cucurbita moschata OX=3662 GN=LOC111460917 ...	[more]
A0A1S3CB58	9.4e-94	88.24	rRNA-processing protein fcf2 OS=Cucumis melo OX=3656 GN=LOC103498854 PE=4 SV=1	[more]
A0A0A0K9M7	2.7e-93	88.73	Fcf2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G094730 PE=4 S...	[more]
A0A6J1DMD6	1.4e-92	89.22	rRNA-processing protein fcf2 OS=Momordica charantia OX=3673 GN=LOC111022552 PE=4...	[more]

BLAST of Carg04996 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G30495.2	8.5e-55	55.56	Fcf2 pre-rRNA processing protein	[more]
AT5G30495.1	8.5e-55	55.56	Fcf2 pre-rRNA processing protein	[more]
AT1G54770.1	2.2e-50	54.23	Fcf2 pre-rRNA processing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014810	Fcf2 pre-rRNA processing, C-terminal	PFAM	PF08698	Fcf2	coord: 71..172 e-value: 2.1E-33 score: 114.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..190
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
IPR039883	Fcf2/DNTTIP2	PANTHER	PTHR21686	UNCHARACTERIZED	coord: 5..199

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04996-RA	Carg04996-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005730	nucleolus