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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGATGGTGGAGGTGCTAGGATTGAATTTCAAGATGTTAAGTGTATGTAAGAGCTTGCCATTTGTTTCTTGTCAATGTCATCATAACATCTTGCTTTCTCCTCTAGCTGCTTTAGGACTATATAGTCCTACTAAACCATATAGTTCTGAAGCATCCAAGGATAGATGGTACTCAGCAAGCTGACAAGTTTTTATTTTTGTCCAGGTTCTCCCGCCCCTTGGAGGTATTTGGGAGAATGTTGTAACATACATGAAGATCATCCAAGACTCTTTCCTTCGATTATTACTTCAAAGCATATGCCTTTATTTCAAAGTTTGATTATAAACGCCGGACCAGTGGCCTACTCTCAAGAAACTGTGGAATGGTCAATAGTGTAGAACTGTGGAGGGGGGAGGGAGGCATCTTGAGTCTTGTCATGAGCCTGACAAGGTGGTACAACACTCGGCCTATTCTCTGCTGCAGATGACAAGCAGCAGGTAAGATAATTGTAAATTTGAGGATTTCTTACCCATATATCTCAATGCATTTCATCAATATTTTGGACAGCCAAAACGTGAGAACCGCCACCTCTCAACACCAAACCAGGCAGCACCTCCTCTGCTACAGCTGAAGGTCCTTGGAAAGCCAAAACCATTGCTCACTGATTCATGGAGCGCCAGTAAAGGATGCGTTTCGAGTTTTTTTAGTTCAACTAACTTTATT mRNA sequence ATGATGGTGGAGGTGCTAGGATTGAATTTCAAGATGTTAAGTGTTCTCCCGCCCCTTGGAGGTGGTACAACACTCGGCCTATTCTCTGCTGCAGATGACAAGCAGCAGCCAAAACGTGAGAACCGCCACCTCTCAACACCAAACCAGGCAGCACCTCCTCTGCTACAGCTGAAGGTCCTTGGAAAGCCAAAACCATTGCTCACTGATTCATGGAGCGCCAGTAAAGGATGCGTTTCGAGTTTTTTTAGTTCAACTAACTTTATT Coding sequence (CDS) ATGATGGTGGAGGTGCTAGGATTGAATTTCAAGATGTTAAGTGTTCTCCCGCCCCTTGGAGGTGGTACAACACTCGGCCTATTCTCTGCTGCAGATGACAAGCAGCAGCCAAAACGTGAGAACCGCCACCTCTCAACACCAAACCAGGCAGCACCTCCTCTGCTACAGCTGAAGGTCCTTGGAAAGCCAAAACCATTGCTCACTGATTCATGGAGCGCCAGTAAAGGATGCGTTTCGAGTTTTTTTAGTTCAACTAACTTTATT Protein sequence MMVEVLGLNFKMLSVLPPLGGGTTLGLFSAADDKQQPKRENRHLSTPNQAAPPLLQLKVLGKPKPLLTDSWSASKGCVSSFFSSTNFI
Homology
BLAST of Carg06046 vs. NCBI nr
Match: KAG7033366.1 (hypothetical protein SDJN02_07422, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 176.4 bits (446), Expect = 1.1e-40 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0
Query: 1 MMVEVLGLNFKMLSVLPPLGGGTTLGLFSAADDKQQPKRENRHLSTPNQAAPPLLQLKVL 60
MMVEVLGLNFKMLSVLPPLGGGTTLGLFSAADDKQQPKRENRHLSTPNQAAPPLLQLKVL
Sbjct: 1 MMVEVLGLNFKMLSVLPPLGGGTTLGLFSAADDKQQPKRENRHLSTPNQAAPPLLQLKVL 60
Query: 61 GKPKPLLTDSWSASKGCVSSFFSSTNFI 89
GKPKPLLTDSWSASKGCVSSFFSSTNFI
Sbjct: 61 GKPKPLLTDSWSASKGCVSSFFSSTNFI 88
BLAST of Carg06046 vs. NCBI nr
Match: KAG6602680.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 157.1 bits (396), Expect = 6.8e-35 Identity = 81/84 (96.43%), Postives = 81/84 (96.43%), Query Frame = 0
Query: 1 MMVEVLGLNFKMLSVLPPLGGGTTLGLFSAADDKQQPKRENRHLSTPNQAAPPLLQLKVL 60
MMVEVLGLNFKMLSVLP LGGGTTLGLFSAADDKQQPKRENRHLSTPNQAAPPLLQLKVL
Sbjct: 723 MMVEVLGLNFKMLSVLPLLGGGTTLGLFSAADDKQQPKRENRHLSTPNQAAPPLLQLKVL 782
Query: 61 --GKPKPLLTDSWSASKGCVSSFF 83
GKPKPLLTDSWSASKGCVSSFF
Sbjct: 783 GNGKPKPLLTDSWSASKGCVSSFF 806
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| KAG7033366.1 | 1.1e-40 | 100.00 | hypothetical protein SDJN02_07422, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| KAG6602680.1 | 6.8e-35 | 96.43 | Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... | [more] |
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 27..50 |
Relationships
The following mRNA feature(s) are a part of this gene:
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