Carg19256 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19256
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Carg_Chr03: 9642401 .. 9643464 (-)
RNA-Seq Expression	Carg19256
Synteny	Carg19256

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCCGCTTGTGCTTCTTCCGCCATCGCCGCGGTGGCGATTTCTTCTTCCAGGCAAGTTTTTTCTATTCCTCCGCCGTTTTTTGCAGTTCTTTATGGAGCTTTGTTTATTGCAGTTCCCAGAAGAATGGATGCCTCAAGGTTTCTAATTTCCTAACCGGCAAGAGGCTGAGGCTGAGAAAGTATACTGCTGCGGCTGTTGCTCCTCGATCAGCTCCGGTGTGCGCCGCCGCCGACCCCGACAGACCCCTCTGGTTCCCCGGCAGCACCCCTCCCCCATGGCTCGACGGCAGCCTCCCCGGCGACTTTGGCTTTGACCCACTTGGTCTCTGTAAGTATTGTTGTATGATGAGAGTTTCACGTCGAATTTACGATCGAGTAAATACTATCTTCATTAGTTTGAGGCCTTTTAGAAAGCCCATAACAGAACTTAGGCTCAAAGCGGATAATATCACCGTATTAAATTTTGAAATTTTTAAGGTTGTCAAGATTTAAAATCATAACTATGTTTGTTTGCGTGTACCAATATTGATAGCTTCTGATCCGGAGAGCCTGAGATGGAACCAGCAAGCAGAGCTGGTGCACTGCCGGTGGGCAATGTTGGGCGCCGCCGGGATTTTCATCCCGGAATTCTTGACAAAGATCGGAATTCTTAACACCCCGTCGTGGTACACTGCCGGAGAATTGGAATACTTCACCGATACGACCACTCTGTTCATTGTGGAACTCATTTTCATCGGTTGGGCCGAGGGTAGACGATGGGCCGACATTCTGAAACCCGGTTGCGTCAATACCGACCCAATCTTCCCCAACAACAAGCTAACCGGAACCGACGTCGGGTACCCAGGTGGCCTGTGGTTCGACCCACTCGGTTGGGGTAGCGGGTCACCCGAAAAAATCAAGGAATTGAGAACGAAAGAGATCAAGAACGGGCGACTGGCTATGTTGGCGGTGATGGGCGCGTGGTTCCAACACATTTACACCGGCACCGGTCCCATCGACAACCTTTTCGCTCACCTTGCCGATCCCGGCCACGCCACTGTCTTCGCCGTGAGTTTTTAA

mRNA sequence

ATGGCCTCCGCTTGTGCTTCTTCCGCCATCGCCGCGGTGGCGATTTCTTCTTCCAGGCAAGTTTTTTCTATTCCTCCGCCTTCCCAGAAGAATGGATGCCTCAAGGTTTCTAATTTCCTAACCGGCAAGAGGCTGAGGCTGAGAAAGTATACTGCTGCGGCTGTTGCTCCTCGATCAGCTCCGAGCCTGAGATGGAACCAGCAAGCAGAGCTGGTGCACTGCCGGTGGGCAATGTTGGGCGCCGCCGGGATTTTCATCCCGGAATTCTTGACAAAGATCGGAATTCTTAACACCCCGTCGTGGTACACTGCCGGAGAATTGGAATACTTCACCGATACGACCACTCTGTTCATTGTGGAACTCATTTTCATCGGTTGGGCCGAGGGTAGACGATGGGCCGACATTCTGAAACCCGGTTGCGTCAATACCGACCCAATCTTCCCCAACAACAAGCTAACCGGAACCGACGTCGGGTACCCAGGTGGCCTGTGGTTCGACCCACTCGGTTGGGGTAGCGGGTCACCCGAAAAAATCAAGGAATTGAGAACGAAAGAGATCAAGAACGGGCGACTGGCTATGTTGGCGGTGATGGGCGCGTGGTTCCAACACATTTACACCGGCACCGGTCCCATCGACAACCTTTTCGCTCACCTTGCCGATCCCGGCCACGCCACTGTCTTCGCCGTGAGTTTTTAA

Coding sequence (CDS)

ATGGCCTCCGCTTGTGCTTCTTCCGCCATCGCCGCGGTGGCGATTTCTTCTTCCAGGCAAGTTTTTTCTATTCCTCCGCCTTCCCAGAAGAATGGATGCCTCAAGGTTTCTAATTTCCTAACCGGCAAGAGGCTGAGGCTGAGAAAGTATACTGCTGCGGCTGTTGCTCCTCGATCAGCTCCGAGCCTGAGATGGAACCAGCAAGCAGAGCTGGTGCACTGCCGGTGGGCAATGTTGGGCGCCGCCGGGATTTTCATCCCGGAATTCTTGACAAAGATCGGAATTCTTAACACCCCGTCGTGGTACACTGCCGGAGAATTGGAATACTTCACCGATACGACCACTCTGTTCATTGTGGAACTCATTTTCATCGGTTGGGCCGAGGGTAGACGATGGGCCGACATTCTGAAACCCGGTTGCGTCAATACCGACCCAATCTTCCCCAACAACAAGCTAACCGGAACCGACGTCGGGTACCCAGGTGGCCTGTGGTTCGACCCACTCGGTTGGGGTAGCGGGTCACCCGAAAAAATCAAGGAATTGAGAACGAAAGAGATCAAGAACGGGCGACTGGCTATGTTGGCGGTGATGGGCGCGTGGTTCCAACACATTTACACCGGCACCGGTCCCATCGACAACCTTTTCGCTCACCTTGCCGATCCCGGCCACGCCACTGTCTTCGCCGTGAGTTTTTAA

Protein sequence

MASACASSAIAAVAISSSRQVFSIPPPSQKNGCLKVSNFLTGKRLRLRKYTAAAVAPRSAPSLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAVSF

Homology

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BLAST of Carg19256 vs. NCBI nr
Match: KAG7034707.1 (Chlorophyll a-b binding protein 7, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 479.9 bits (1234), Expect = 1.2e-131
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 1   MASACASSAIAAVAISSSRQVFSIPPPSQKNGCLKVSNFLTGKRLRLRKYTAAAVAPRSA 60
           MASACASSAIAAVAISSSRQVFSIPPPSQKNGCLKVSNFLTGKRLRLRKYTAAAVAPRSA
Sbjct: 1   MASACASSAIAAVAISSSRQVFSIPPPSQKNGCLKVSNFLTGKRLRLRKYTAAAVAPRSA 60

Query: 61  PSLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVE 120
           PSLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVE
Sbjct: 61  PSLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVE 120

Query: 121 LIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKE 180
           LIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKE
Sbjct: 121 LIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKE 180

Query: 181 LRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAVSF 232
           LRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAVSF
Sbjct: 181 LRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAVSF 231

[Close]

BLAST of Carg19256 vs. NCBI nr
Match: XP_022957420.1 (chlorophyll a-b binding protein 7, chloroplastic [Cucurbita moschata] >XP_022998486.1 chlorophyll a-b binding protein 7, chloroplastic [Cucurbita maxima] >XP_023515906.1 chlorophyll a-b binding protein 7, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 424.9 bits (1091), Expect = 4.6e-115
Identity = 218/270 (80.74%), Postives = 218/270 (80.74%), Query Frame = 0


Query: 1   MASACASSAIAAVAISSSRQVFSIPPPSQKNGCLKVSNFLTGKRLRLRKYTAAAVAPRSA 60
           MASACASSAIAAVAISSS         SQKNGC KVSNFLTGKRLRLRKYTAAAVAPRSA
Sbjct: 1   MASACASSAIAAVAISSS--------SSQKNGCPKVSNFLTGKRLRLRKYTAAAVAPRSA 60

Query: 61  P------------------------------------------SLRWNQQAELVHCRWAM 120
           P                                          SLRWNQQAELVHCRWAM
Sbjct: 61  PVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAM 120

Query: 121 LGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKP 180
           LGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKP
Sbjct: 121 LGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKP 180

Query: 181 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMG 229
           GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMG
Sbjct: 181 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMG 240

[Close]

BLAST of Carg19256 vs. NCBI nr
Match: XP_023541134.1 (chlorophyll a-b binding protein 7, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 417.5 bits (1072), Expect = 7.3e-113
Identity = 212/270 (78.52%), Postives = 215/270 (79.63%), Query Frame = 0


Query: 1   MASACASSAIAAVAISSSRQVFSIPPPSQKNGCLKVSNFLTGKRLRLRKYTAAAVAPRSA 60
           MASACASSAIA VAISSS         SQKNGC K SNF+TGK+LRLRKYT AAVAPRSA
Sbjct: 1   MASACASSAIATVAISSS--------SSQKNGCPKASNFVTGKKLRLRKYTTAAVAPRSA 60

Query: 61  P------------------------------------------SLRWNQQAELVHCRWAM 120
           P                                          SLRWNQQAELVHCRWAM
Sbjct: 61  PVCAAADPNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAM 120

Query: 121 LGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKP 180
           LGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLF+VELIFIGWAEGRRWADILKP
Sbjct: 121 LGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILKP 180

Query: 181 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMG 229
           GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMG
Sbjct: 181 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMG 240

[Close]

BLAST of Carg19256 vs. NCBI nr
Match: XP_022966812.1 (chlorophyll a-b binding protein 7, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 416.0 bits (1068), Expect = 2.1e-112
Identity = 211/270 (78.15%), Postives = 214/270 (79.26%), Query Frame = 0


Query: 1   MASACASSAIAAVAISSSRQVFSIPPPSQKNGCLKVSNFLTGKRLRLRKYTAAAVAPRSA 60
           MASACASSAIA VAISSS         SQKNGC K SNF+TGK+LRLRKYT  AVAPRSA
Sbjct: 1   MASACASSAIATVAISSS--------SSQKNGCPKASNFVTGKKLRLRKYTTVAVAPRSA 60

Query: 61  P------------------------------------------SLRWNQQAELVHCRWAM 120
           P                                          SLRWNQQAELVHCRWAM
Sbjct: 61  PVCAAADPNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAM 120

Query: 121 LGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKP 180
           LGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLF+VELIFIGWAEGRRWADILKP
Sbjct: 121 LGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILKP 180

Query: 181 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMG 229
           GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMG
Sbjct: 181 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMG 240

[Close]

BLAST of Carg19256 vs. NCBI nr
Match: XP_022945038.1 (chlorophyll a-b binding protein 7, chloroplastic-like [Cucurbita moschata] >KAG6573588.1 Chlorophyll a-b binding protein 7, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 414.5 bits (1064), Expect = 6.2e-112
Identity = 210/270 (77.78%), Postives = 213/270 (78.89%), Query Frame = 0


Query: 1   MASACASSAIAAVAISSSRQVFSIPPPSQKNGCLKVSNFLTGKRLRLRKYTAAAVAPRSA 60
           MASACASSAI AVAISSS         SQKNGC K SNF+TGK+LRLRKYT   VAPRSA
Sbjct: 1   MASACASSAITAVAISSS--------SSQKNGCPKASNFVTGKKLRLRKYTTGVVAPRSA 60

Query: 61  P------------------------------------------SLRWNQQAELVHCRWAM 120
           P                                          SLRWNQQAELVHCRWAM
Sbjct: 61  PVCAAADPNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAM 120

Query: 121 LGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKP 180
           LGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLF+VELIFIGWAEGRRWADILKP
Sbjct: 121 LGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILKP 180

Query: 181 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMG 229
           GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMG
Sbjct: 181 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMG 240

[Close]

BLAST of Carg19256 vs. ExPASy Swiss-Prot
Match: P10708 (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB7 PE=3 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 1.0e-101
Identity = 191/273 (69.96%), Postives = 202/273 (73.99%), Query Frame = 0


Query: 1   MASACASSAIAAVAISSSRQVFSIPPPSQKNGCL---KVSNFLTGKRLRLRKYTAAAVA- 60
           MASACASS IAAVA SS        P S++NG +     ++FL G+RLR+ KY+    A 
Sbjct: 1   MASACASSTIAAVAFSS--------PSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTAR 60

Query: 61  -----------------PRSAP------------------------SLRWNQQAELVHCR 120
                            P S P                        SLRWNQQAELVHCR
Sbjct: 61  SATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCR 120

Query: 121 WAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADI 180
           WAMLGAAGIFIPE LTKIGILNTPSWYTAGE EYFTDTTTLFIVEL+ IGWAEGRRWADI
Sbjct: 121 WAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADI 180

Query: 181 LKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLA 229
           +KPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP KIKELRTKEIKNGRLAMLA
Sbjct: 181 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLA 240

[Close]

BLAST of Carg19256 vs. ExPASy Swiss-Prot
Match: P13869 (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 1.1e-100
Identity = 191/273 (69.96%), Postives = 204/273 (74.73%), Query Frame = 0


Query: 1   MASACASSAIAAVAISSSRQVFSIPPPSQKNGCL---KVSNFLTGKRLRLRKYTA----- 60
           MASACASS IAAVA SS        P SQKNG +     ++FL GKRLR+ K+ A     
Sbjct: 1   MASACASSTIAAVAFSS--------PSSQKNGSIVGATKASFLGGKRLRVSKFIAPVGSR 60

Query: 61  ----AAVA---------PRSAP------------------------SLRWNQQAELVHCR 120
               +AVA         P S P                        SL+WN QAELVH R
Sbjct: 61  SVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSR 120

Query: 121 WAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADI 180
           WAMLGAAGIFIPEFLTKIG+LNTPSWYTAGE EYFTDTTTLF++EL+ IGWAEGRRWADI
Sbjct: 121 WAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADI 180

Query: 181 LKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLA 229
           +KPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP KIKELRTKEIKNGRLAMLA
Sbjct: 181 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLA 240

[Close]

BLAST of Carg19256 vs. ExPASy Swiss-Prot
Match: Q9SYW8 (Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA2 PE=1 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 4.6e-94
Identity = 154/167 (92.22%), Postives = 161/167 (96.41%), Query Frame = 0


Query: 62  SLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVEL 121
           SL+WN QAE+VHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGE EYFTD TTLF+VEL
Sbjct: 86  SLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVEL 145

Query: 122 IFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKEL 181
           I IGWAEGRRWADI+KPG VNTDP+FPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KEL
Sbjct: 146 ILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKEL 205

Query: 182 RTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFA 229
           RTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT+FA
Sbjct: 206 RTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 252

[Close]

BLAST of Carg19256 vs. ExPASy Swiss-Prot
Match: Q8LCQ4 (Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA6 PE=1 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.4e-58
Identity = 99/167 (59.28%), Postives = 122/167 (73.05%), Query Frame = 0


Query: 62  SLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVEL 121
           +L+W  QAEL+H RWAML   GI IPE L ++G +   SWY AG  EYF D+TTLF+ ++
Sbjct: 99  TLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQM 158

Query: 122 IFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKEL 181
           + +GWAEGRRWAD++KPG V+ +P +P+      DVGYPGGLWFD + WG GSPE +  L
Sbjct: 159 VLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVL 218

Query: 182 RTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFA 229
           RTKEIKNGRLAMLA +G  FQ  YT   PI+NL AHLADPGH  VF+
Sbjct: 219 RTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFS 265

[Close]

BLAST of Carg19256 vs. ExPASy Swiss-Prot
Match: Q9SQL2 (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 8.8e-45
Identity = 87/165 (52.73%), Postives = 107/165 (64.85%), Query Frame = 0


Query: 62  SLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVEL 121
           +LRW  QAELV+ RWAMLG AG+ +PE  T IGI+N P WY AG+ EYF  ++TLF++E 
Sbjct: 87  NLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEF 146

Query: 122 IFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKEL 181
           I   + E RRW DI  PG VN DPIF    L   +VGYPGG+ F+PL +         E 
Sbjct: 147 ILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGI-FNPLNFA-----PTLEA 206

Query: 182 RTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATV 227
           + KEI NGRLAMLA +G   QH  TG GP DNL  H++DP H T+
Sbjct: 207 KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTI 245

[Close]

BLAST of Carg19256 vs. ExPASy TrEMBL
Match: A0A6J1KAB5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111493102 PE=3 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 2.2e-115
Identity = 218/270 (80.74%), Postives = 218/270 (80.74%), Query Frame = 0


Query: 1   MASACASSAIAAVAISSSRQVFSIPPPSQKNGCLKVSNFLTGKRLRLRKYTAAAVAPRSA 60
           MASACASSAIAAVAISSS         SQKNGC KVSNFLTGKRLRLRKYTAAAVAPRSA
Sbjct: 1   MASACASSAIAAVAISSS--------SSQKNGCPKVSNFLTGKRLRLRKYTAAAVAPRSA 60

Query: 61  P------------------------------------------SLRWNQQAELVHCRWAM 120
           P                                          SLRWNQQAELVHCRWAM
Sbjct: 61  PVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAM 120

Query: 121 LGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKP 180
           LGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKP
Sbjct: 121 LGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKP 180

Query: 181 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMG 229
           GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMG
Sbjct: 181 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMG 240

[Close]

BLAST of Carg19256 vs. ExPASy TrEMBL
Match: A0A6J1H0H5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111458830 PE=3 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 2.2e-115
Identity = 218/270 (80.74%), Postives = 218/270 (80.74%), Query Frame = 0


Query: 1   MASACASSAIAAVAISSSRQVFSIPPPSQKNGCLKVSNFLTGKRLRLRKYTAAAVAPRSA 60
           MASACASSAIAAVAISSS         SQKNGC KVSNFLTGKRLRLRKYTAAAVAPRSA
Sbjct: 1   MASACASSAIAAVAISSS--------SSQKNGCPKVSNFLTGKRLRLRKYTAAAVAPRSA 60

Query: 61  P------------------------------------------SLRWNQQAELVHCRWAM 120
           P                                          SLRWNQQAELVHCRWAM
Sbjct: 61  PVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAM 120

Query: 121 LGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKP 180
           LGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKP
Sbjct: 121 LGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKP 180

Query: 181 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMG 229
           GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMG
Sbjct: 181 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMG 240

[Close]

BLAST of Carg19256 vs. ExPASy TrEMBL
Match: A0A6J1HNZ1 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466406 PE=3 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 1.0e-112
Identity = 211/270 (78.15%), Postives = 214/270 (79.26%), Query Frame = 0


Query: 1   MASACASSAIAAVAISSSRQVFSIPPPSQKNGCLKVSNFLTGKRLRLRKYTAAAVAPRSA 60
           MASACASSAIA VAISSS         SQKNGC K SNF+TGK+LRLRKYT  AVAPRSA
Sbjct: 1   MASACASSAIATVAISSS--------SSQKNGCPKASNFVTGKKLRLRKYTTVAVAPRSA 60

Query: 61  P------------------------------------------SLRWNQQAELVHCRWAM 120
           P                                          SLRWNQQAELVHCRWAM
Sbjct: 61  PVCAAADPNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAM 120

Query: 121 LGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKP 180
           LGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLF+VELIFIGWAEGRRWADILKP
Sbjct: 121 LGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILKP 180

Query: 181 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMG 229
           GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMG
Sbjct: 181 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMG 240

[Close]

BLAST of Carg19256 vs. ExPASy TrEMBL
Match: A0A6J1FZP5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111449400 PE=3 SV=1)

HSP 1 Score: 414.5 bits (1064), Expect = 3.0e-112
Identity = 210/270 (77.78%), Postives = 213/270 (78.89%), Query Frame = 0


Query: 1   MASACASSAIAAVAISSSRQVFSIPPPSQKNGCLKVSNFLTGKRLRLRKYTAAAVAPRSA 60
           MASACASSAI AVAISSS         SQKNGC K SNF+TGK+LRLRKYT   VAPRSA
Sbjct: 1   MASACASSAITAVAISSS--------SSQKNGCPKASNFVTGKKLRLRKYTTGVVAPRSA 60

Query: 61  P------------------------------------------SLRWNQQAELVHCRWAM 120
           P                                          SLRWNQQAELVHCRWAM
Sbjct: 61  PVCAAADPNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAM 120

Query: 121 LGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKP 180
           LGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLF+VELIFIGWAEGRRWADILKP
Sbjct: 121 LGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILKP 180

Query: 181 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMG 229
           GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMG
Sbjct: 181 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMG 240

[Close]

BLAST of Carg19256 vs. ExPASy TrEMBL
Match: A0A6J1DD44 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111019680 PE=3 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 3.9e-112
Identity = 211/270 (78.15%), Postives = 215/270 (79.63%), Query Frame = 0


Query: 1   MASACASSAIAAVAISSSRQVFSIPPPSQKNGCLKVSNFLTGKRLRLRKYTAAAVAPRSA 60
           MASACASSAIAAVAISSS         SQKNGC K  NF+TGK+LRLRKYTAAAVAPRSA
Sbjct: 1   MASACASSAIAAVAISSS--------SSQKNGCPKACNFVTGKKLRLRKYTAAAVAPRSA 60

Query: 61  ------------------------------------------PSLRWNQQAELVHCRWAM 120
                                                      SLRWNQQAELVHCRWAM
Sbjct: 61  TVCAAADPNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAM 120

Query: 121 LGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKP 180
           LGAAGIFIPEFLTKIGILNTPSWY+AGELEYFTDTTTLF+VELIFIGWAEGRRWADILKP
Sbjct: 121 LGAAGIFIPEFLTKIGILNTPSWYSAGELEYFTDTTTLFVVELIFIGWAEGRRWADILKP 180

Query: 181 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMG 229
           GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMG
Sbjct: 181 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMG 240

[Close]

BLAST of Carg19256 vs. TAIR 10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2 )

HSP 1 Score: 345.5 bits (885), Expect = 3.3e-95
Identity = 154/167 (92.22%), Postives = 161/167 (96.41%), Query Frame = 0


Query: 62  SLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVEL 121
           SL+WN QAE+VHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGE EYFTD TTLF+VEL
Sbjct: 86  SLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVEL 145

Query: 122 IFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKEL 181
           I IGWAEGRRWADI+KPG VNTDP+FPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KEL
Sbjct: 146 ILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKEL 205

Query: 182 RTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFA 229
           RTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT+FA
Sbjct: 206 RTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 252

[Close]

BLAST of Carg19256 vs. TAIR 10
Match: AT1G19150.1 (photosystem I light harvesting complex gene 6 )

HSP 1 Score: 227.6 bits (579), Expect = 1.0e-59
Identity = 99/167 (59.28%), Postives = 122/167 (73.05%), Query Frame = 0


Query: 62  SLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVEL 121
           +L+W  QAEL+H RWAML   GI IPE L ++G +   SWY AG  EYF D+TTLF+ ++
Sbjct: 99  TLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQM 158

Query: 122 IFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKEL 181
           + +GWAEGRRWAD++KPG V+ +P +P+      DVGYPGGLWFD + WG GSPE +  L
Sbjct: 159 VLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVL 218

Query: 182 RTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFA 229
           RTKEIKNGRLAMLA +G  FQ  YT   PI+NL AHLADPGH  VF+
Sbjct: 219 RTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFS 265

[Close]

BLAST of Carg19256 vs. TAIR 10
Match: AT5G28450.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 204.1 bits (518), Expect = 1.2e-52
Identity = 90/98 (91.84%), Postives = 94/98 (95.92%), Query Frame = 0


Query: 131 RWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGR 190
           R  DI+KPG VNTDP+FPNNKLTGTD+GYPGGLWFDPLGWGSGSP KIKELRTKEIKNGR
Sbjct: 71  RAPDIIKPGSVNTDPVFPNNKLTGTDIGYPGGLWFDPLGWGSGSPTKIKELRTKEIKNGR 130

Query: 191 LAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFA 229
           LAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT+FA
Sbjct: 131 LAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 168

[Close]

BLAST of Carg19256 vs. TAIR 10
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4 )

HSP 1 Score: 180.3 bits (456), Expect = 1.8e-45
Identity = 85/165 (51.52%), Postives = 109/165 (66.06%), Query Frame = 0


Query: 62  SLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVEL 121
           +L+W  QAELV+ RWAMLG AG+ +PE  TKIGI+N P WY AG+ +YF  ++TLF++E 
Sbjct: 88  NLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEF 147

Query: 122 IFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKEL 181
           I   + E RRW DI  PG VN DPIF    L   +VGYPGG+ F+PL +        +E 
Sbjct: 148 ILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGI-FNPLNFA-----PTQEA 207

Query: 182 RTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATV 227
           + KE+ NGRLAMLA +G   QH  TG GP +NL  HL+DP H T+
Sbjct: 208 KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTI 246

[Close]

BLAST of Carg19256 vs. TAIR 10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 146.7 bits (369), Expect = 2.2e-35
Identity = 76/174 (43.68%), Postives = 103/174 (59.20%), Query Frame = 0


Query: 62  SLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEY-FTDTTTLFIVE 121
           SL+W  QAELVH R+AMLG AGI   + L   GI N P WY AG +++ F  T TL +V+
Sbjct: 80  SLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQ 139

Query: 122 LIFIGWAEGRRWADILKPGCVNTDPIF---PNNKLTGTDVGYPGGLWFDPLGWGSGSPEK 181
            + +G+AE +R+ D + PG    +  F       L G + GYPGG   +PLG      + 
Sbjct: 140 FLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAK-DVQN 199

Query: 182 IKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAVSF 232
             + + KEIKNGRLAM+A++G + Q   T TGPIDNL  HL++P H T+    F
Sbjct: 200 AHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTLF 252

The following BLAST results are available for this feature:

BLAST of Carg19256 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034707.1	1.2e-131	100.00	Chlorophyll a-b binding protein 7, chloroplastic, partial [Cucurbita argyrosperm...	[more]
XP_022957420.1	4.6e-115	80.74	chlorophyll a-b binding protein 7, chloroplastic [Cucurbita moschata] >XP_022998...	[more]
XP_023541134.1	7.3e-113	78.52	chlorophyll a-b binding protein 7, chloroplastic-like [Cucurbita pepo subsp. pep...	[more]
XP_022966812.1	2.1e-112	78.15	chlorophyll a-b binding protein 7, chloroplastic-like [Cucurbita maxima]	[more]
XP_022945038.1	6.2e-112	77.78	chlorophyll a-b binding protein 7, chloroplastic-like [Cucurbita moschata] >KAG6...	[more]

BLAST of Carg19256 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10708	1.0e-101	69.96	Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081...	[more]
P13869	1.1e-100	69.96	Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 S...	[more]
Q9SYW8	4.6e-94	92.22	Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis th...	[more]
Q8LCQ4	1.4e-58	59.28	Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis th...	[more]
Q9SQL2	8.8e-45	52.73	Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lh...	[more]

BLAST of Carg19256 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KAB5	2.2e-115	80.74	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1H0H5	2.2e-115	80.74	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1HNZ1	1.0e-112	78.15	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1FZP5	3.0e-112	77.78	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1DD44	3.9e-112	78.15	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]

BLAST of Carg19256 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61470.1	3.3e-95	92.22	photosystem I light harvesting complex gene 2	[more]
AT1G19150.1	1.0e-59	59.28	photosystem I light harvesting complex gene 6	[more]
AT5G28450.1	1.2e-52	91.84	Chlorophyll A-B binding family protein	[more]
AT3G47470.1	1.8e-45	51.52	light-harvesting chlorophyll-protein complex I subunit A4	[more]
AT1G45474.1	2.2e-35	43.68	photosystem I light harvesting complex gene 5	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 61..203 e-value: 9.8E-41 score: 140.0
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 40..223 e-value: 4.3E-63 score: 214.6
None	No IPR available	PANTHER	PTHR21649:SF116	CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC	coord: 61..229
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 60..228
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 61..229

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19256-RA	Carg19256-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding