Carg07020-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CTCTCTCTCTCTCTCTCTCTCTCCATCATTCAGATCCAGAGGTTACCGAGGAAGCCAGGGCGTTGAAAAAAATGTGTCCCCTGAGATTTATTCTCATATTTCTCTCTGCGACTCTTGCCGGCTTCTTCGTTCTCCGTAACATCAAATCGCAACCTCAAGATTTCGAAACCGAGGATAATTCCGATGCGCATTCTAACGATTTGTCTTCCAATTCCACCTCCTCCAAGGTTCTTCTTCCGATTCTGTCTTCTTTTTCCTTTTTGTTTGACTCTTTGTTTGTTTGTTTGTTTGTTTGTTTGTCTGAATGGAACGATTGTGGATTGTTTGAACAGGTGACTTCGGCTATGCAATCTGGATTCTGGACGGTGGTCGACATGGCTAGCGGCCGCTACTTGTGGAGGAATTTGTTTCCGTCGTCTCAGAAGCGTTCCGATTGA CTCTCTCTCTCTCTCTCTCTCTCCATCATTCAGATCCAGAGGTTACCGAGGAAGCCAGGGCGTTGAAAAAAATGTGTCCCCTGAGATTTATTCTCATATTTCTCTCTGCGACTCTTGCCGGCTTCTTCGTTCTCCGTAACATCAAATCGCAACCTCAAGATTTCGAAACCGAGGATAATTCCGATGCGCATTCTAACGATTTGTCTTCCAATTCCACCTCCTCCAAGGTGACTTCGGCTATGCAATCTGGATTCTGGACGGTGGTCGACATGGCTAGCGGCCGCTACTTGTGGAGGAATTTGTTTCCGTCGTCTCAGAAGCGTTCCGATTGA ATGTGTCCCCTGAGATTTATTCTCATATTTCTCTCTGCGACTCTTGCCGGCTTCTTCGTTCTCCGTAACATCAAATCGCAACCTCAAGATTTCGAAACCGAGGATAATTCCGATGCGCATTCTAACGATTTGTCTTCCAATTCCACCTCCTCCAAGGTGACTTCGGCTATGCAATCTGGATTCTGGACGGTGGTCGACATGGCTAGCGGCCGCTACTTGTGGAGGAATTTGTTTCCGTCGTCTCAGAAGCGTTCCGATTGA MCPLRFILIFLSATLAGFFVLRNIKSQPQDFETEDNSDAHSNDLSSNSTSSKVTSAMQSGFWTVVDMASGRYLWRNLFPSSQKRSD Homology
BLAST of Carg07020-RA vs. NCBI nr
Match: KAG7037036.1 (hypothetical protein SDJN02_00657 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 169.5 bits (428), Expect = 1.3e-38 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0
BLAST of Carg07020-RA vs. NCBI nr
Match: XP_022949071.1 (uncharacterized protein LOC111452533 [Cucurbita moschata] >KAG6607364.1 hypothetical protein SDJN03_00706, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 167.5 bits (423), Expect = 4.9e-38 Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0
BLAST of Carg07020-RA vs. NCBI nr
Match: XP_023525661.1 (uncharacterized protein LOC111789199 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 163.7 bits (413), Expect = 7.1e-37 Identity = 82/86 (95.35%), Postives = 85/86 (98.84%), Query Frame = 0
BLAST of Carg07020-RA vs. NCBI nr
Match: XP_022997733.1 (uncharacterized protein LOC111492605 [Cucurbita maxima]) HSP 1 Score: 162.2 bits (409), Expect = 2.1e-36 Identity = 81/86 (94.19%), Postives = 85/86 (98.84%), Query Frame = 0
BLAST of Carg07020-RA vs. NCBI nr
Match: XP_023519406.1 (uncharacterized protein LOC111782825 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 141.0 bits (354), Expect = 4.9e-30 Identity = 73/94 (77.66%), Postives = 82/94 (87.23%), Query Frame = 0
BLAST of Carg07020-RA vs. ExPASy TrEMBL
Match: A0A6J1GAZ0 (uncharacterized protein LOC111452533 OS=Cucurbita moschata OX=3662 GN=LOC111452533 PE=4 SV=1) HSP 1 Score: 167.5 bits (423), Expect = 2.4e-38 Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0
BLAST of Carg07020-RA vs. ExPASy TrEMBL
Match: A0A6J1KER9 (uncharacterized protein LOC111492605 OS=Cucurbita maxima OX=3661 GN=LOC111492605 PE=4 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 9.9e-37 Identity = 81/86 (94.19%), Postives = 85/86 (98.84%), Query Frame = 0
BLAST of Carg07020-RA vs. ExPASy TrEMBL
Match: A0A6J1DPZ0 (uncharacterized protein LOC111022014 OS=Momordica charantia OX=3673 GN=LOC111022014 PE=4 SV=1) HSP 1 Score: 129.0 bits (323), Expect = 9.3e-27 Identity = 72/89 (80.90%), Postives = 77/89 (86.52%), Query Frame = 0
BLAST of Carg07020-RA vs. ExPASy TrEMBL
Match: A0A0A0LV42 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025180 PE=4 SV=1) HSP 1 Score: 122.9 bits (307), Expect = 6.7e-25 Identity = 64/86 (74.42%), Postives = 73/86 (84.88%), Query Frame = 0
BLAST of Carg07020-RA vs. ExPASy TrEMBL
Match: A0A1S3BWD8 (uncharacterized protein LOC103494193 OS=Cucumis melo OX=3656 GN=LOC103494193 PE=4 SV=1) HSP 1 Score: 121.3 bits (303), Expect = 1.9e-24 Identity = 64/86 (74.42%), Postives = 72/86 (83.72%), Query Frame = 0
BLAST of Carg07020-RA vs. TAIR 10
Match: AT5G58375.1 (Methyltransferase-related protein ) HSP 1 Score: 88.6 bits (218), Expect = 2.7e-18 Identity = 50/85 (58.82%), Postives = 59/85 (69.41%), Query Frame = 0
BLAST of Carg07020-RA vs. TAIR 10
Match: AT5G18150.1 (Methyltransferase-related protein ) HSP 1 Score: 67.8 bits (164), Expect = 4.9e-12 Identity = 35/83 (42.17%), Postives = 49/83 (59.04%), Query Frame = 0
BLAST of Carg07020-RA vs. TAIR 10
Match: AT5G14602.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Methyltransferase-related protein (TAIR:AT5G18150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 65.9 bits (159), Expect = 1.9e-11 Identity = 37/83 (44.58%), Postives = 49/83 (59.04%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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