Carg07020 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg07020
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionMethyltransferase-related protein, putative
LocationCarg_Chr01: 3873831 .. 3874267 (-)
RNA-Seq ExpressionCarg07020
SyntenyCarg07020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTCTCTCTCTCTCTCTCTCTCCATCATTCAGATCCAGAGGTTACCGAGGAAGCCAGGGCGTTGAAAAAAATGTGTCCCCTGAGATTTATTCTCATATTTCTCTCTGCGACTCTTGCCGGCTTCTTCGTTCTCCGTAACATCAAATCGCAACCTCAAGATTTCGAAACCGAGGATAATTCCGATGCGCATTCTAACGATTTGTCTTCCAATTCCACCTCCTCCAAGGTTCTTCTTCCGATTCTGTCTTCTTTTTCCTTTTTGTTTGACTCTTTGTTTGTTTGTTTGTTTGTTTGTTTGTCTGAATGGAACGATTGTGGATTGTTTGAACAGGTGACTTCGGCTATGCAATCTGGATTCTGGACGGTGGTCGACATGGCTAGCGGCCGCTACTTGTGGAGGAATTTGTTTCCGTCGTCTCAGAAGCGTTCCGATTGA

mRNA sequence

CTCTCTCTCTCTCTCTCTCTCTCCATCATTCAGATCCAGAGGTTACCGAGGAAGCCAGGGCGTTGAAAAAAATGTGTCCCCTGAGATTTATTCTCATATTTCTCTCTGCGACTCTTGCCGGCTTCTTCGTTCTCCGTAACATCAAATCGCAACCTCAAGATTTCGAAACCGAGGATAATTCCGATGCGCATTCTAACGATTTGTCTTCCAATTCCACCTCCTCCAAGGTGACTTCGGCTATGCAATCTGGATTCTGGACGGTGGTCGACATGGCTAGCGGCCGCTACTTGTGGAGGAATTTGTTTCCGTCGTCTCAGAAGCGTTCCGATTGA

Coding sequence (CDS)

ATGTGTCCCCTGAGATTTATTCTCATATTTCTCTCTGCGACTCTTGCCGGCTTCTTCGTTCTCCGTAACATCAAATCGCAACCTCAAGATTTCGAAACCGAGGATAATTCCGATGCGCATTCTAACGATTTGTCTTCCAATTCCACCTCCTCCAAGGTGACTTCGGCTATGCAATCTGGATTCTGGACGGTGGTCGACATGGCTAGCGGCCGCTACTTGTGGAGGAATTTGTTTCCGTCGTCTCAGAAGCGTTCCGATTGA

Protein sequence

MCPLRFILIFLSATLAGFFVLRNIKSQPQDFETEDNSDAHSNDLSSNSTSSKVTSAMQSGFWTVVDMASGRYLWRNLFPSSQKRSD
Homology
[Close]
BLAST of Carg07020 vs. NCBI nr
Match: KAG7037036.1 (hypothetical protein SDJN02_00657 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.5 bits (428), Expect = 1.3e-38
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MCPLRFILIFLSATLAGFFVLRNIKSQPQDFETEDNSDAHSNDLSSNSTSSKVTSAMQSG 60
          MCPLRFILIFLSATLAGFFVLRNIKSQPQDFETEDNSDAHSNDLSSNSTSSKVTSAMQSG
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNIKSQPQDFETEDNSDAHSNDLSSNSTSSKVTSAMQSG 60

Query: 61 FWTVVDMASGRYLWRNLFPSSQKRSD 87
          FWTVVDMASGRYLWRNLFPSSQKRSD
Sbjct: 61 FWTVVDMASGRYLWRNLFPSSQKRSD 86

[Close]
BLAST of Carg07020 vs. NCBI nr
Match: XP_022949071.1 (uncharacterized protein LOC111452533 [Cucurbita moschata] >KAG6607364.1 hypothetical protein SDJN03_00706, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167.5 bits (423), Expect = 4.9e-38
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0 

Query: 1  MCPLRFILIFLSATLAGFFVLRNIKSQPQDFETEDNSDAHSNDLSSNSTSSKVTSAMQSG 60
          MCPLRFILIFLSATLAGFFVLRNIKSQPQDFE EDNSDAHSNDLSSNSTSSKVTSAMQSG
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNIKSQPQDFEAEDNSDAHSNDLSSNSTSSKVTSAMQSG 60

Query: 61 FWTVVDMASGRYLWRNLFPSSQKRSD 87
          FWTVVDMASGRYLWRNLFPSSQKRSD
Sbjct: 61 FWTVVDMASGRYLWRNLFPSSQKRSD 86

[Close]
BLAST of Carg07020 vs. NCBI nr
Match: XP_023525661.1 (uncharacterized protein LOC111789199 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 163.7 bits (413), Expect = 7.1e-37
Identity = 82/86 (95.35%), Postives = 85/86 (98.84%), Query Frame = 0 

Query: 1  MCPLRFILIFLSATLAGFFVLRNIKSQPQDFETEDNSDAHSNDLSSNSTSSKVTSAMQSG 60
          MCPLRFILIFLSATLAGFFVLRN+KSQPQDFE +DNSDAHSNDLSSNSTSSKVTSAMQSG
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSDAHSNDLSSNSTSSKVTSAMQSG 60

Query: 61 FWTVVDMASGRYLWRNLFPSSQKRSD 87
          FWTVVDMASGRYLWR+LFPSSQKRSD
Sbjct: 61 FWTVVDMASGRYLWRHLFPSSQKRSD 86

[Close]
BLAST of Carg07020 vs. NCBI nr
Match: XP_022997733.1 (uncharacterized protein LOC111492605 [Cucurbita maxima])

HSP 1 Score: 162.2 bits (409), Expect = 2.1e-36
Identity = 81/86 (94.19%), Postives = 85/86 (98.84%), Query Frame = 0 

Query: 1   MCPLRFILIFLSATLAGFFVLRNIKSQPQDFETEDNSDAHSNDLSSNSTSSKVTSAMQSG 60
           MCPLRFILIFLSATLAGFFVLRN+KSQPQDFE ++NSDAHSNDLSSNSTSSKVTSAMQSG
Sbjct: 68  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADENSDAHSNDLSSNSTSSKVTSAMQSG 127

Query: 61  FWTVVDMASGRYLWRNLFPSSQKRSD 87
           FWTVVDMASGRYLWR+LFPSSQKRSD
Sbjct: 128 FWTVVDMASGRYLWRHLFPSSQKRSD 153

[Close]
BLAST of Carg07020 vs. NCBI nr
Match: XP_023519406.1 (uncharacterized protein LOC111782825 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 141.0 bits (354), Expect = 4.9e-30
Identity = 73/94 (77.66%), Postives = 82/94 (87.23%), Query Frame = 0 

Query: 1  MCPLRFILIFLSATLAGFFVLRNIKSQPQDFETEDNSDAHSNDLSSNSTS--------SK 60
          MCPLRFILIFLSATLAGFFVLRN+KSQPQDFE +DNS+ HSND+S+NSTS        SK
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSETHSNDVSTNSTSSSSSSSSFSK 60

Query: 61 VTSAMQSGFWTVVDMASGRYLWRNLFPSSQKRSD 87
          V+SAMQSGFWTVVDMASGRYLWR+L PSS+K S+
Sbjct: 61 VSSAMQSGFWTVVDMASGRYLWRHLMPSSKKPSN 94

[Close]
BLAST of Carg07020 vs. ExPASy TrEMBL
Match: A0A6J1GAZ0 (uncharacterized protein LOC111452533 OS=Cucurbita moschata OX=3662 GN=LOC111452533 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.4e-38
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0 

Query: 1  MCPLRFILIFLSATLAGFFVLRNIKSQPQDFETEDNSDAHSNDLSSNSTSSKVTSAMQSG 60
          MCPLRFILIFLSATLAGFFVLRNIKSQPQDFE EDNSDAHSNDLSSNSTSSKVTSAMQSG
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNIKSQPQDFEAEDNSDAHSNDLSSNSTSSKVTSAMQSG 60

Query: 61 FWTVVDMASGRYLWRNLFPSSQKRSD 87
          FWTVVDMASGRYLWRNLFPSSQKRSD
Sbjct: 61 FWTVVDMASGRYLWRNLFPSSQKRSD 86

[Close]
BLAST of Carg07020 vs. ExPASy TrEMBL
Match: A0A6J1KER9 (uncharacterized protein LOC111492605 OS=Cucurbita maxima OX=3661 GN=LOC111492605 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 9.9e-37
Identity = 81/86 (94.19%), Postives = 85/86 (98.84%), Query Frame = 0 

Query: 1   MCPLRFILIFLSATLAGFFVLRNIKSQPQDFETEDNSDAHSNDLSSNSTSSKVTSAMQSG 60
           MCPLRFILIFLSATLAGFFVLRN+KSQPQDFE ++NSDAHSNDLSSNSTSSKVTSAMQSG
Sbjct: 68  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADENSDAHSNDLSSNSTSSKVTSAMQSG 127

Query: 61  FWTVVDMASGRYLWRNLFPSSQKRSD 87
           FWTVVDMASGRYLWR+LFPSSQKRSD
Sbjct: 128 FWTVVDMASGRYLWRHLFPSSQKRSD 153

[Close]
BLAST of Carg07020 vs. ExPASy TrEMBL
Match: A0A6J1DPZ0 (uncharacterized protein LOC111022014 OS=Momordica charantia OX=3673 GN=LOC111022014 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 9.3e-27
Identity = 72/89 (80.90%), Postives = 77/89 (86.52%), Query Frame = 0 

Query: 1  MCPLRFILIFLSATLAGFFVLRNIKSQPQDFE-TEDNSDAHSNDLSSNSTSSKVTSAMQS 60
          MCPLRFILIFLSATLAGFFVLRN+KSQPQDFE  +DNSDAHSND SS + SS  TS + S
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEAADDNSDAHSND-SSAAHSSNSTSKVSS 60

Query: 61 GFWTVVDMASGRYLWRNLFPSSQ--KRSD 87
          GFWTVVDMASGRYLWR+LFPSS   KRSD
Sbjct: 61 GFWTVVDMASGRYLWRHLFPSSSSPKRSD 88

[Close]
BLAST of Carg07020 vs. ExPASy TrEMBL
Match: A0A0A0LV42 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025180 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.7e-25
Identity = 64/86 (74.42%), Postives = 73/86 (84.88%), Query Frame = 0 

Query: 1  MCPLRFILIFLSATLAGFFVLRNIKSQPQDFETEDNSDAHSNDLSSNSTSSKVTSAMQSG 60
          MCPLRFILIFLSATLAGFFVLRN+KSQPQDF   DNSD +SN+  S+ +SS   S + SG
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSS--CSKVSSG 60

Query: 61 FWTVVDMASGRYLWRNLFPSSQKRSD 87
          FWT+VDMASGRYLWR+LFPSS+K SD
Sbjct: 61 FWTLVDMASGRYLWRHLFPSSKKPSD 84

[Close]
BLAST of Carg07020 vs. ExPASy TrEMBL
Match: A0A1S3BWD8 (uncharacterized protein LOC103494193 OS=Cucumis melo OX=3656 GN=LOC103494193 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.9e-24
Identity = 64/86 (74.42%), Postives = 72/86 (83.72%), Query Frame = 0 

Query: 1  MCPLRFILIFLSATLAGFFVLRNIKSQPQDFETEDNSDAHSNDLSSNSTSSKVTSAMQSG 60
          MCPLRFILIFLSATLAGFFVLRN+KSQPQDF   DNSD  S +L S+ ++S   S + SG
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDSSKELDSSDSTS--CSKVSSG 60

Query: 61 FWTVVDMASGRYLWRNLFPSSQKRSD 87
          FWTVVDMASGRYLWR+LFPSS+K SD
Sbjct: 61 FWTVVDMASGRYLWRHLFPSSKKPSD 84

[Close]
BLAST of Carg07020 vs. TAIR 10
Match: AT5G58375.1 (Methyltransferase-related protein )

HSP 1 Score: 88.6 bits (218), Expect = 2.7e-18
Identity = 50/85 (58.82%), Postives = 59/85 (69.41%), Query Frame = 0 

Query: 1  MCPLRFILIFLSATLAGFFVLRNIKSQPQDFETEDNSDAHSNDLSSNSTSSKVTSAMQSG 60
          MCPLR ILIFLSATLAGFFVL+ + S   D   +  +DA   D  S S  SKV  AM+SG
Sbjct: 1  MCPLRLILIFLSATLAGFFVLQKLNSTSDDPLDDSFTDAEHADDDSVSGFSKVGMAMKSG 60

Query: 61 FWTVVDMASGRYLWRNLFPSSQKRS 86
          FWT VDMASGRYLW NL  ++++ S
Sbjct: 61 FWTCVDMASGRYLWNNLCSNAKRSS 85

[Close]
BLAST of Carg07020 vs. TAIR 10
Match: AT5G18150.1 (Methyltransferase-related protein )

HSP 1 Score: 67.8 bits (164), Expect = 4.9e-12
Identity = 35/83 (42.17%), Postives = 49/83 (59.04%), Query Frame = 0 

Query: 1  MCPLRFILIFLSATLAGFFVLRNIKSQPQDFETEDNSDAHSNDLSSNSTSSKVTSAMQSG 60
          MCP+RF+L+F SA LAG+F  + + S P +F++ D          +      +   M++G
Sbjct: 1  MCPMRFLLVFFSAVLAGYFAWKTVSSSP-EFDSPDE--------LNEKQELNLKKKMENG 60

Query: 61 FWTVVDMASGRYLWRNLFPSSQK 84
          FW  VDMASGRYLWRNL    +K
Sbjct: 61 FWVFVDMASGRYLWRNLKEMREK 74

[Close]
BLAST of Carg07020 vs. TAIR 10
Match: AT5G14602.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Methyltransferase-related protein (TAIR:AT5G18150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-11
Identity = 37/83 (44.58%), Postives = 49/83 (59.04%), Query Frame = 0 

Query: 1  MCPLRFILIFLSATLAGFFVLRNIKSQPQDFETEDNSDAHSNDLSSNSTSSKVTSAMQSG 60
          MCPLRF+L+F SA LAG+   R + S P+ F +++   A + +        K    M +G
Sbjct: 1  MCPLRFVLVFFSAVLAGYIAWRTVNSTPELF-SDELLQAEAKEKQGLDFKRK----MDNG 60

Query: 61 FWTVVDMASGRYLWRNLFPSSQK 84
           WT VDMASGRYLWRNL    Q+
Sbjct: 61 LWTFVDMASGRYLWRNLKEMRQR 78

The following BLAST results are available for this feature:
BLAST of Carg07020 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7037036.11.3e-38100.00hypothetical protein SDJN02_00657 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022949071.14.9e-3898.84uncharacterized protein LOC111452533 [Cucurbita moschata] >KAG6607364.1 hypothet... [more]
XP_023525661.17.1e-3795.35uncharacterized protein LOC111789199 [Cucurbita pepo subsp. pepo][more]
XP_022997733.12.1e-3694.19uncharacterized protein LOC111492605 [Cucurbita maxima][more]
XP_023519406.14.9e-3077.66uncharacterized protein LOC111782825 [Cucurbita pepo subsp. pepo][more]
BLAST of Carg07020 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg07020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GAZ02.4e-3898.84uncharacterized protein LOC111452533 OS=Cucurbita moschata OX=3662 GN=LOC1114525... [more]
A0A6J1KER99.9e-3794.19uncharacterized protein LOC111492605 OS=Cucurbita maxima OX=3661 GN=LOC111492605... [more]
A0A6J1DPZ09.3e-2780.90uncharacterized protein LOC111022014 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A0A0LV426.7e-2574.42Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025180 PE=4 SV=1[more]
A0A1S3BWD81.9e-2474.42uncharacterized protein LOC103494193 OS=Cucumis melo OX=3656 GN=LOC103494193 PE=... [more]
BLAST of Carg07020 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G58375.12.7e-1858.82Methyltransferase-related protein [more]
AT5G18150.14.9e-1242.17Methyltransferase-related protein [more]
AT5G14602.11.9e-1144.58FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..51
NoneNo IPR availablePANTHERPTHR34132EMB|CAB87627.1-RELATEDcoord: 1..85
NoneNo IPR availablePANTHERPTHR34132:SF4EXPRESSED PROTEINcoord: 1..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07020-RACarg07020-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032259 methylation
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0008168 methyltransferase activity