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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGCGATCAATTCTTATGAAAACTCAAAGAACAAGACTTGTTTTTTCTTGTGATGCAATTGATTCGAGGGATGCTAACGCAATATATCTTCCTAATCTCACGCCATTCTTGGCATTTTTAGTGGCCTGCTGTACAGAATACTTGACTTGCGGTTTCAGGAAACAAGAATATGCCCAAGTGGAATTCTCTTACATTCCAAAGATGGAGTATCTATCGAATATTCTTCTTGGACCGACCTCTGGCTGTGGCTGCTTCACAGCGGCCGTCAGGATTGACAAGTTATACCTCTTAGTTGGTTTATATATCAACGTATCTCTACAGCATGTTTTAACTTTATTTACTTCAATTACTCACATATGCATTACTTGTGTAATTTGTGTACTGAAATTACTAGTAGTGAGTTTTCGACCCTTTTTCACTCTATTTATATTTTCATTTGGTGTCATGTTTCCATTGAAATGCCATTTTGTAATTCATCTG mRNA sequence ATGCGATCAATTCTTATGAAAACTCAAAGAACAAGACTTGTTTTTTCTTGTGATGCAATTGATTCGAGGGATGCTAACGCAATATATCTTCCTAATCTCACGCCATTCTTGGCATTTTTAGTGGCCTGCTGTACAGAATACTTGACTTGCGGTTTCAGGAAACAAGAATATGCCCAAGTGGAATTCTCTTACATTCCAAAGATGGAGTATCTATCGAATATTCTTCTTGGACCGACCTCTGGCTGTGGCTGCTTCACAGCGGCCGTCAGGATTGACAAGTTATACCTCTTAGTTGGTTTATATATCAACGTATCTCTACAGCATGTTTTAACTTTATTTACTTCAATTACTCACATATGCATTACTTGTGTAATTTGTGTACTGAAATTACTAGTAGTGAGTTTTCGACCCTTTTTCACTCTATTTATATTTTCATTTGGTGTCATGTTTCCATTGAAATGCCATTTTGTAATTCATCTG Coding sequence (CDS) ATGCGATCAATTCTTATGAAAACTCAAAGAACAAGACTTGTTTTTTCTTGTGATGCAATTGATTCGAGGGATGCTAACGCAATATATCTTCCTAATCTCACGCCATTCTTGGCATTTTTAGTGGCCTGCTGTACAGAATACTTGACTTGCGGTTTCAGGAAACAAGAATATGCCCAAGTGGAATTCTCTTACATTCCAAAGATGGAGTATCTATCGAATATTCTTCTTGGACCGACCTCTGGCTGTGGCTGCTTCACAGCGGCCGTCAGGATTGACAAGTTATACCTCTTAGTTGGTTTATATATCAACGTATCTCTACAGCATGTTTTAACTTTATTTACTTCAATTACTCACATATGCATTACTTGTGTAATTTGTGTACTGAAATTACTAGTAGTGAGTTTTCGACCCTTTTTCACTCTATTTATATTTTCATTTGGTGTCATGTTTCCATTGAAATGCCATTTTGTAATTCATCTG Protein sequence MRSILMKTQRTRLVFSCDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRKQEYAQVEFSYIPKMEYLSNILLGPTSGCGCFTAAVRIDKLYLLVGLYINVSLQHVLTLFTSITHICITCVICVLKLLVVSFRPFFTLFIFSFGVMFPLKCHFVIHL
Homology
BLAST of CSPI06G27760 vs. ExPASy TrEMBL
Match: A0A0A0KJG6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490070 PE=4 SV=1) HSP 1 Score: 141.0 bits (354), Expect = 4.4e-30 Identity = 70/89 (78.65%), Postives = 75/89 (84.27%), Query Frame = 0 Query: 10 RTRLVFSCDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRKQEYAQVEFSYIPKME 69 + + FS DAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFR+QE AQVE YIPKME Sbjct: 11 QNKTCFSRDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRRQENAQVESFYIPKME 70
Query: 70 YLSNILLGPTSGCGCFTAAVRIDKLYLLV 99 YLS+I T G GCFTAAVRI KLYLL+ Sbjct: 71 YLSDINSSWTYGHGCFTAAVRIGKLYLLI 99
BLAST of CSPI06G27760 vs. ExPASy TrEMBL
Match: A0A5D3CR89 (Nuclear pore complex protein NUP58 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005110 PE=4 SV=1) HSP 1 Score: 94.7 bits (234), Expect = 3.6e-16 Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 0 Query: 7 KTQRTRLVFSCDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRKQEYAQVE 62 + + + FSCD IDSR ANAIYLP LTPFLAFLVACCTEYL CGFRKQEYAQVE Sbjct: 507 ENSKNKTCFSCDEIDSRGANAIYLPYLTPFLAFLVACCTEYLNCGFRKQEYAQVE 561
BLAST of CSPI06G27760 vs. NCBI nr
Match: KAE8647491.1 (hypothetical protein Csa_003749 [Cucumis sativus]) HSP 1 Score: 143.7 bits (361), Expect = 1.4e-30 Identity = 71/89 (79.78%), Postives = 76/89 (85.39%), Query Frame = 0 Query: 10 RTRLVFSCDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRKQEYAQVEFSYIPKME 69 + + FS DAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFR+QE AQVE YIPKME Sbjct: 11 QNKTCFSRDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRRQENAQVESFYIPKME 70
Query: 70 YLSNILLGPTSGCGCFTAAVRIDKLYLLV 99 YLS+I T G GCFTAAVRIDKLYLL+ Sbjct: 71 YLSDINSSWTYGHGCFTAAVRIDKLYLLI 99
BLAST of CSPI06G27760 vs. NCBI nr
Match: TYK12916.1 (nuclear pore complex protein NUP58 isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 94.7 bits (234), Expect = 7.5e-16 Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 0 Query: 7 KTQRTRLVFSCDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRKQEYAQVE 62 + + + FSCD IDSR ANAIYLP LTPFLAFLVACCTEYL CGFRKQEYAQVE Sbjct: 507 ENSKNKTCFSCDEIDSRGANAIYLPYLTPFLAFLVACCTEYLNCGFRKQEYAQVE 561
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KJG6 | 4.4e-30 | 78.65 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490070 PE=4 SV=1 | [more] |
A0A5D3CR89 | 3.6e-16 | 78.18 | Nuclear pore complex protein NUP58 isoform X1 OS=Cucumis melo var. makuwa OX=119... | [more] |
Match Name | E-value | Identity | Description | |
KAE8647491.1 | 1.4e-30 | 79.78 | hypothetical protein Csa_003749 [Cucumis sativus] | [more] |
TYK12916.1 | 7.5e-16 | 78.18 | nuclear pore complex protein NUP58 isoform X1 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0051028 |
mRNA transport |
biological_process |
GO:0006913 |
nucleocytoplasmic transport |
biological_process |
GO:0015031 |
protein transport |
cellular_component |
GO:0005643 |
nuclear pore |
molecular_function |
GO:0008139 |
nuclear localization sequence binding |
molecular_function |
GO:0017056 |
structural constituent of nuclear pore |
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