CSPI06G10140 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G10140
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDUF4283 domain-containing protein
LocationChr6: 8759555 .. 8760051 (+)
RNA-Seq ExpressionCSPI06G10140
SyntenyCSPI06G10140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCACATACACCATCTCCATTTACAAAAATAGAGATTTATTAACAACAGTGAAAGAGATGATGAACACACCATTTGGAGTAGTCGATGTTGTTGATAGTTGACCGACTGTTTATACGATTAATCCTACGACCAGGAGCCTTGGAATTGAATTTTCAGAAGTCCCAACAATCACCGGATCAAACCAAACCCAGTATGCTATCAGCTTTGTGCTGAATTCAGGAAAGGAAAACGATAATGAAGTTGATTCTAAGGCTGCATCATCAATGCTTCCATGGTGTTCTAAGACAATGTGTGCTGCAATTTTGATTGGAAGGACGCTGAACTGCAAATAAGAGCATTGAAAGATCTGATTGGACTACACAAGCCATCCATTGTGCTGATCTTTGGCTCCAAGATCAGCAGTTCTGATGCGGATGAGGTTGTGCGAGAGTTTGCTTTCAATGGTTTCTACTGTAGAAAGCACGACGGCAACAATGGTGTTAATAAAAGAAGATAA

mRNA sequence

ACCACATACACCATCTCCATTTACAAAAATAGAGATTTATTAACAACAGTGAAAGAGATGATGAACACACCATTTGGAGTAGTCGATGTTGTTGATAGTTGACCGACTGTTTATACGATTAATCCTACGACCAGGAGCCTTGGAATTGAATTTTCAGAAGTCCCAACAATCACCGGATCAAACCAAACCCAACAATGTGTGCTGCAATTTTGATTGGAAGGACGCTGAACTGCAAATAAGAGCATTGAAAGATCTGATTGGACTACACAAGCCATCCATTGTGCTGATCTTTGGCTCCAAGATCAGCAGTTCTGATGCGGATGAGGTTGTGCGAGAGTTTGCTTTCAATGGTTTCTACTGTAGAAAGCACGACGGCAACAATGGTGTTAATAAAAGAAGATAA

Coding sequence (CDS)

ATGTTGTTGATAGTTGACCGACTGTTTATACGATTAATCCTACGACCAGGAGCCTTGGAATTGAATTTTCAGAAGTCCCAACAATCACCGGATCAAACCAAACCCAACAATGTGTGCTGCAATTTTGATTGGAAGGACGCTGAACTGCAAATAAGAGCATTGAAAGATCTGATTGGACTACACAAGCCATCCATTGTGCTGATCTTTGGCTCCAAGATCAGCAGTTCTGATGCGGATGAGGTTGTGCGAGAGTTTGCTTTCAATGGTTTCTACTGTAGAAAGCACGACGGCAACAATGGTGTTAATAAAAGAAGATAA

Protein sequence

MLLIVDRLFIRLILRPGALELNFQKSQQSPDQTKPNNVCCNFDWKDAELQIRALKDLIGLHKPSIVLIFGSKISSSDADEVVREFAFNGFYCRKHDGNNGVNKRR*
Homology
BLAST of CSPI06G10140 vs. ExPASy TrEMBL
Match: A0A0A0KB07 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124230 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 3.4e-47
Identity = 102/127 (80.31%), Postives = 103/127 (81.10%), Query Frame = 0

Query: 1   MLLIVDRLFIRLILRPGALELNFQKSQQSPDQTKPNN----------------------V 60
           MLLIVDRLFIRLILRPGALELNFQKSQQSPDQTKP                        +
Sbjct: 1   MLLIVDRLFIRLILRPGALELNFQKSQQSPDQTKPRKENDNEVDSKAASSMLPWCSKTML 60

Query: 61  CCNFDWKDAELQIRALKDLIGLHKPSIVLIFGSKISSSDADEVVREFAFNGFYCRKHDGN 106
           CCNFDWKDAELQIRALKDLIGLHKPSIVLIFGSKISSSDADEVVREFAFNGFYCRKHDGN
Sbjct: 61  CCNFDWKDAELQIRALKDLIGLHKPSIVLIFGSKISSSDADEVVREFAFNGFYCRKHDGN 120

BLAST of CSPI06G10140 vs. ExPASy TrEMBL
Match: A0A0A0KRY0 (DUF4283 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G175800 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 6.1e-28
Identity = 63/81 (77.78%), Postives = 68/81 (83.95%), Query Frame = 0

Query: 20  ELNFQKSQQSPDQTKPNNVCCNFDWKDAELQIRALKDLIGLHKPSIVLIFGSKISSSDAD 79
           E++ + +   P       +CCNFDWKDAELQIRALKDLIGLHKPSIVLIFGSKISSSDAD
Sbjct: 507 EVDSKAASSVPPWCSKTMLCCNFDWKDAELQIRALKDLIGLHKPSIVLIFGSKISSSDAD 566

Query: 80  EVVREFAFNGFYCRKHDGNNG 101
           EVVREFAFNGFYCRK DGNNG
Sbjct: 567 EVVREFAFNGFYCRKPDGNNG 587

BLAST of CSPI06G10140 vs. ExPASy TrEMBL
Match: A0A5A7SSW6 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00460 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 4.4e-18
Identity = 54/93 (58.06%), Postives = 61/93 (65.59%), Query Frame = 0

Query: 10  IRLILRPGALELN--FQKSQQSPDQTKPNNVCCNFDWKDAELQIRALKDLIGLHKPSIVL 69
           I  +L PG    N    K+   P       +C NFD KD  L  +ALKDLIGLH+PSIVL
Sbjct: 567 INFVLNPGRENENEVDSKAASMPSLCSKKMLCWNFDGKDIALLKKALKDLIGLHEPSIVL 626

Query: 70  IFGSKISSSDADEVVREFAFNGFYCRKHDGNNG 101
           IFGSKISSSDADEV+RE  F+GFY RK DG NG
Sbjct: 627 IFGSKISSSDADEVMRELGFDGFYSRKPDGYNG 659

BLAST of CSPI06G10140 vs. ExPASy TrEMBL
Match: A0A6J1FN13 (uncharacterized protein LOC111446932 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446932 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.2e-13
Identity = 42/63 (66.67%), Postives = 47/63 (74.60%), Query Frame = 0

Query: 38  VCCNFDWKDAELQIRALKDLIGLHKPSIVLIFGSKISSSDADEVVREFAFNGFYCRKHDG 97
           +C NF   D    +RALKDLI LHKPSIVLIFG+KIS +DAD VVRE AF+G YCRK DG
Sbjct: 475 LCWNFRATDNAKLMRALKDLIQLHKPSIVLIFGTKISGADADHVVRELAFDGSYCRKPDG 534

Query: 98  NNG 101
             G
Sbjct: 535 YKG 537

BLAST of CSPI06G10140 vs. ExPASy TrEMBL
Match: A0A6J1FU80 (uncharacterized protein LOC111446932 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446932 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.2e-13
Identity = 42/63 (66.67%), Postives = 47/63 (74.60%), Query Frame = 0

Query: 38  VCCNFDWKDAELQIRALKDLIGLHKPSIVLIFGSKISSSDADEVVREFAFNGFYCRKHDG 97
           +C NF   D    +RALKDLI LHKPSIVLIFG+KIS +DAD VVRE AF+G YCRK DG
Sbjct: 477 LCWNFRATDNAKLMRALKDLIQLHKPSIVLIFGTKISGADADHVVRELAFDGSYCRKPDG 536

Query: 98  NNG 101
             G
Sbjct: 537 YKG 539

BLAST of CSPI06G10140 vs. NCBI nr
Match: KAE8646846.1 (hypothetical protein Csa_020922 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 3.2e-31
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0

Query: 38  VCCNFDWKDAELQIRALKDLIGLHKPSIVLIFGSKISSSDADEVVREFAFNGFYCRKHDG 97
           +CCNFDWKDAELQIRALKDLIGLHKPSIVLIFGSKISSSDADEVVREFAFNGFYCRKHDG
Sbjct: 10  LCCNFDWKDAELQIRALKDLIGLHKPSIVLIFGSKISSSDADEVVREFAFNGFYCRKHDG 69

Query: 98  NNGVNKRR 106
           NNGVNKRR
Sbjct: 70  NNGVNKRR 77

BLAST of CSPI06G10140 vs. NCBI nr
Match: KGN50456.1 (hypothetical protein Csa_000264 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 1.3e-27
Identity = 63/81 (77.78%), Postives = 68/81 (83.95%), Query Frame = 0

Query: 20  ELNFQKSQQSPDQTKPNNVCCNFDWKDAELQIRALKDLIGLHKPSIVLIFGSKISSSDAD 79
           E++ + +   P       +CCNFDWKDAELQIRALKDLIGLHKPSIVLIFGSKISSSDAD
Sbjct: 507 EVDSKAASSVPPWCSKTMLCCNFDWKDAELQIRALKDLIGLHKPSIVLIFGSKISSSDAD 566

Query: 80  EVVREFAFNGFYCRKHDGNNG 101
           EVVREFAFNGFYCRK DGNNG
Sbjct: 567 EVVREFAFNGFYCRKPDGNNG 587

BLAST of CSPI06G10140 vs. NCBI nr
Match: KAA0034060.1 (hypothetical protein E6C27_scaffold65G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 9.0e-18
Identity = 54/93 (58.06%), Postives = 61/93 (65.59%), Query Frame = 0

Query: 10  IRLILRPGALELN--FQKSQQSPDQTKPNNVCCNFDWKDAELQIRALKDLIGLHKPSIVL 69
           I  +L PG    N    K+   P       +C NFD KD  L  +ALKDLIGLH+PSIVL
Sbjct: 567 INFVLNPGRENENEVDSKAASMPSLCSKKMLCWNFDGKDIALLKKALKDLIGLHEPSIVL 626

Query: 70  IFGSKISSSDADEVVREFAFNGFYCRKHDGNNG 101
           IFGSKISSSDADEV+RE  F+GFY RK DG NG
Sbjct: 627 IFGSKISSSDADEVMRELGFDGFYSRKPDGYNG 659

BLAST of CSPI06G10140 vs. NCBI nr
Match: XP_022941632.1 (uncharacterized protein LOC111446932 isoform X2 [Cucurbita moschata])

HSP 1 Score: 84.3 bits (207), Expect = 6.7e-13
Identity = 42/63 (66.67%), Postives = 47/63 (74.60%), Query Frame = 0

Query: 38  VCCNFDWKDAELQIRALKDLIGLHKPSIVLIFGSKISSSDADEVVREFAFNGFYCRKHDG 97
           +C NF   D    +RALKDLI LHKPSIVLIFG+KIS +DAD VVRE AF+G YCRK DG
Sbjct: 475 LCWNFRATDNAKLMRALKDLIQLHKPSIVLIFGTKISGADADHVVRELAFDGSYCRKPDG 534

Query: 98  NNG 101
             G
Sbjct: 535 YKG 537

BLAST of CSPI06G10140 vs. NCBI nr
Match: XP_022941630.1 (uncharacterized protein LOC111446932 isoform X1 [Cucurbita moschata])

HSP 1 Score: 84.3 bits (207), Expect = 6.7e-13
Identity = 42/63 (66.67%), Postives = 47/63 (74.60%), Query Frame = 0

Query: 38  VCCNFDWKDAELQIRALKDLIGLHKPSIVLIFGSKISSSDADEVVREFAFNGFYCRKHDG 97
           +C NF   D    +RALKDLI LHKPSIVLIFG+KIS +DAD VVRE AF+G YCRK DG
Sbjct: 477 LCWNFRATDNAKLMRALKDLIQLHKPSIVLIFGTKISGADADHVVRELAFDGSYCRKPDG 536

Query: 98  NNG 101
             G
Sbjct: 537 YKG 539

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KB073.4e-4780.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124230 PE=4 SV=1[more]
A0A0A0KRY06.1e-2877.78DUF4283 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G175800 PE=... [more]
A0A5A7SSW64.4e-1858.06DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A6J1FN133.2e-1366.67uncharacterized protein LOC111446932 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1FU803.2e-1366.67uncharacterized protein LOC111446932 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
Match NameE-valueIdentityDescription
KAE8646846.13.2e-3198.53hypothetical protein Csa_020922 [Cucumis sativus][more]
KGN50456.11.3e-2777.78hypothetical protein Csa_000264 [Cucumis sativus][more]
KAA0034060.19.0e-1858.06hypothetical protein E6C27_scaffold65G00460 [Cucumis melo var. makuwa][more]
XP_022941632.16.7e-1366.67uncharacterized protein LOC111446932 isoform X2 [Cucurbita moschata][more]
XP_022941630.16.7e-1366.67uncharacterized protein LOC111446932 isoform X1 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G10140.1CSPI06G10140.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding