|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGCTCGATACTTTGTCCCCGATCGACAGAAAGTAAAATTGATGTCCAAAATTCAAAGAGTCGGCGATATCACCATGACATGATTTGTAAACAAAATGTATCGATAATCAATAAAAGTGCAATTCTGTACAATCATAGAAAAAGGAAACAATCGGGATTCCGAACACCTAGTTTAATGCGTCCCCAAATTAGCGCAACCACAATACGCATTGAGAAATTGAACACGGAGAAGTGGAAAAGAAAGGATTCACCTGAAACAAGCGCCGTGTTCAAAGCCATGAAAATGCTTCAGGCACTCGCTTGTGTATCGCAATGCTTAACTAATTAA mRNA sequence ATGCTCGATACTTTGTCCCCGATCGACAGAAAAAAAAGGAAACAATCGGGATTCCGAACACCTAGTTTAATGCGTCCCCAAATTAGCGCAACCACAATACGCATTGAGAAATTGAACACGGAGAAGTGGAAAAGAAAGGATTCACCTGAAACAAGCGCCGTGTTCAAAGCCATGAAAATGCTTCAGGCACTCGCTTGTGTATCGCAATGCTTAACTAATTAA Coding sequence (CDS) ATGCTCGATACTTTGTCCCCGATCGACAGAAAAAAAAGGAAACAATCGGGATTCCGAACACCTAGTTTAATGCGTCCCCAAATTAGCGCAACCACAATACGCATTGAGAAATTGAACACGGAGAAGTGGAAAAGAAAGGATTCACCTGAAACAAGCGCCGTGTTCAAAGCCATGAAAATGCTTCAGGCACTCGCTTGTGTATCGCAATGCTTAACTAATTAA Protein sequence MLDTLSPIDRKKRKQSGFRTPSLMRPQISATTIRIEKLNTEKWKRKDSPETSAVFKAMKMLQALACVSQCLTN*
Homology
BLAST of CSPI05G09170 vs. ExPASy TrEMBL
Match: A0A0A0KLK2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G177680 PE=4 SV=1) HSP 1 Score: 141.0 bits (354), Expect = 2.0e-30 Identity = 71/73 (97.26%), Postives = 71/73 (97.26%), Query Frame = 0 Query: 1 MLDTLSPIDRKKRKQSGFRTPSLMRPQISATTIRIEKLNTEKWKRKDSPETSAVFKAMKM 60 MLDTLSPIDRKKRKQSGFRTP LMR QISATTIRIEKLNTEKWKRKDSPETSAVFKAMKM Sbjct: 1 MLDTLSPIDRKKRKQSGFRTPGLMRSQISATTIRIEKLNTEKWKRKDSPETSAVFKAMKM 60
Query: 61 LQALACVSQCLTN 74 LQALACVSQCLTN Sbjct: 61 LQALACVSQCLTN 73
BLAST of CSPI05G09170 vs. NCBI nr
Match: KGN50500.1 (hypothetical protein Csa_000652 [Cucumis sativus]) HSP 1 Score: 141.0 bits (354), Expect = 4.2e-30 Identity = 71/73 (97.26%), Postives = 71/73 (97.26%), Query Frame = 0 Query: 1 MLDTLSPIDRKKRKQSGFRTPSLMRPQISATTIRIEKLNTEKWKRKDSPETSAVFKAMKM 60 MLDTLSPIDRKKRKQSGFRTP LMR QISATTIRIEKLNTEKWKRKDSPETSAVFKAMKM Sbjct: 1 MLDTLSPIDRKKRKQSGFRTPGLMRSQISATTIRIEKLNTEKWKRKDSPETSAVFKAMKM 60
Query: 61 LQALACVSQCLTN 74 LQALACVSQCLTN Sbjct: 61 LQALACVSQCLTN 73
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KLK2 | 2.0e-30 | 97.26 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G177680 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KGN50500.1 | 4.2e-30 | 97.26 | hypothetical protein Csa_000652 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 71..73 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..16 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..23 |
Relationships
The following mRNA feature(s) are a part of this gene:
|