CSPI04G21470 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G21470
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Biogenesis of lysosome-related organelles complex 1 subunit 7
Location	Chr4: 19945465 .. 19946939 (+)
RNA-Seq Expression	CSPI04G21470
Synteny	CSPI04G21470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAACTCTCCCTCCCAGCTCTCTCGCCTCGTCCGGCCACATAGCTGCCGCTGCACCTCCGTCCGACGTTCGCCCAACACCGCAGTCGCACGCTGGTCGTTTTCCATCTCCGCCGGAGTCGCACATCGGGACAGAATTGAAACAATATTATCCCAGACATCATTATTATCTGAATTGGGCTACAAGCTTACGACGGACCAATTAGTGAATCCTTCTGGACTCATACCACAAGTTTTGCGAGTCCCTGAACGCAGCAAGTGTGGTAATTTCCCGTGTACTTCCCATGTGATTTCGATCTGGAATTCGTATATGTATATTCTGAGGACTAATGGAGATTAAACTCGAGGAAACTTTTGCATATTTCGGAGTTCCAGCCTCCGATTTGTTCATTATTTTTTTTATTTATCTTTTAATTACTGCAAATATAGTTGTGATTGAATCTGTAGGACTATTTTTCTTCAATTGCGGTAGCCGCGAGCTTGTCGTTTTCTTCAAAATTTTCTGTCTTGGACAGTCGATTACCGAGACTTATTCGTTGTGGTTATCAGTGTCGCTTTTGACTTTTCTCTTGTAGAATCATTACATGTTGAAAATTGTGGAAACTGTTTTCATTTAATTCTTTTTTTCCTCACAGTATCGATGCTACATTACAGTTGATTCTACATTATACTGCCAACTAACGAACTCATATATATCTGTAGAAAGATGGTCGATCATTAAAAATTGTAAATAGAGTTTGTTTATGATCGTATAATGATAAATTCTGTGGGGGTTTGTTTAGAATTTAGTTGAGATGCACAGTCCGGAGAAATTGGATGACGATTATTCTGCCAATGAGGACAGCAACGTCTCAGCTGAATTGGAGACTTCAATTACTCTCAATGGTGATCTCCAGGAAGGAAATGATAGTGAAAATAAGAACTTAGGAAATTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTATCAACATCATAAGGGATTTTGACTCGAAAGCTGATGATACTCTTAAAAGCCAGAACCATCTTTCATCTTCCCTTGACCGTCTTACTACAGGTAAAATAAATTACTTCTACGTTGACTAGTTATTCCATAGCTTTGAAGATTCTGTCACTTGCTAGGTTTAAGGGAAGCTTATGCATCATTAATGGTTTTCTCTAATAATGATTACCTTTTCTCTTGGCTTATATGCAAAAATGCAGCTTCTGAAGTTCATAACCTTTTCAATGTTGTGAAAAGTTATTAGTTTAACTGTTAACAGAACTGGATCAATTACTTGAAGATGCACCTTTTCCATTCATCATGCAGCATGCCTCAAGGATATCTAATGTAAGAAAGAGAGTTTTGTCACTGAATTCCATCCTAAGAACTATACAACGAAGAATGGATAACATAGATCGGGCAATCACGATGGGCAATCTACCAGGTGATTGACTTTGCTCTTCAATAGCCTCAATTTTACTGTCT

mRNA sequence

AAAAAAAAAAACTCTCCCTCCCAGCTCTCTCGCCTCGTCCGGCCACATAGCTGCCGCTGCACCTCCGTCCGACGTTCGCCCAACACCGCAGTCGCACGCTGGTCGTTTTCCATCTCCGCCGGAGTCGCACATCGGGACAGAATTGAAACAATATTATCCCAGACATCATTATTATCTGAATTGGGCTACAAGCTTACGACGGACCAATTAGTGAATCCTTCTGGACTCATACCACAAGTTTTGCGAGTCCCTGAACGCAGCAAGTGTGAATTTAGTTGAGATGCACAGTCCGGAGAAATTGGATGACGATTATTCTGCCAATGAGGACAGCAACGTCTCAGCTGAATTGGAGACTTCAATTACTCTCAATGGTGATCTCCAGGAAGGAAATGATAGTGAAAATAAGAACTTAGGAAATTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTATCAACATCATAAGGGATTTTGACTCGAAAGCTGATGATACTCTTAAAAGCCAGAACCATCTTTCATCTTCCCTTGACCGTCTTACTACAGAACTGGATCAATTACTTGAAGATGCACCTTTTCCATTCATCATGCAGCATGCCTCAAGGATATCTAATGTAAGAAAGAGAGTTTTGTCACTGAATTCCATCCTAAGAACTATACAACGAAGAATGGATAACATAGATCGGGCAATCACGATGGGCAATCTACCAGGTGATTGACTTTGCTCTTCAATAGCCTCAATTTTACTGTCT

Coding sequence (CDS)

ATGCACAGTCCGGAGAAATTGGATGACGATTATTCTGCCAATGAGGACAGCAACGTCTCAGCTGAATTGGAGACTTCAATTACTCTCAATGGTGATCTCCAGGAAGGAAATGATAGTGAAAATAAGAACTTAGGAAATTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTATCAACATCATAAGGGATTTTGACTCGAAAGCTGATGATACTCTTAAAAGCCAGAACCATCTTTCATCTTCCCTTGACCGTCTTACTACAGAACTGGATCAATTACTTGAAGATGCACCTTTTCCATTCATCATGCAGCATGCCTCAAGGATATCTAATGTAAGAAAGAGAGTTTTGTCACTGAATTCCATCCTAAGAACTATACAACGAAGAATGGATAACATAGATCGGGCAATCACGATGGGCAATCTACCAGGTGATTGA

Protein sequence

MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLPGD*

Homology

[Close]

BLAST of CSPI04G21470 vs. ExPASy TrEMBL
Match: A0A1S3BAU4 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucumis melo OX=3656 GN=LOC103487651 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.7e-65
Identity = 137/143 (95.80%), Postives = 139/143 (97.20%), Query Frame = 0


Query: 1   MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLIN 60
           MH PEKLDDDYSANEDSNVSAELETSI+  GDLQEGND ENKNLGNSNALANGLSSMLIN
Sbjct: 1   MHRPEKLDDDYSANEDSNVSAELETSISPIGDLQEGNDGENKNLGNSNALANGLSSMLIN 60

Query: 61  IIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLN 120
           IIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLN
Sbjct: 61  IIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLN 120

Query: 121 SILRTIQRRMDNIDRAITMGNLP 144
           SILRTIQRR+DNIDRAITMGNLP
Sbjct: 121 SILRTIQRRVDNIDRAITMGNLP 143

[Close]

BLAST of CSPI04G21470 vs. ExPASy TrEMBL
Match: A0A6J1IKP2 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita maxima OX=3661 GN=LOC111477110 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 7.5e-53
Identity = 119/143 (83.22%), Postives = 130/143 (90.91%), Query Frame = 0


Query: 1   MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLIN 60
           MHSPEK+ DD  ANEDS+ S ELETSI+ NG+L+E ND  N NL NSNALANGLSSMLIN
Sbjct: 1   MHSPEKVLDD-PANEDSSFSVELETSISRNGNLKEENDLANTNLENSNALANGLSSMLIN 60

Query: 61  IIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLN 120
           IIRDFDSKADDTLKSQ+ LSSSLDR+TTELDQLLEDAPFPFIMQHASRIS+VRKRVLSLN
Sbjct: 61  IIRDFDSKADDTLKSQSQLSSSLDRITTELDQLLEDAPFPFIMQHASRISSVRKRVLSLN 120

Query: 121 SILRTIQRRMDNIDRAITMGNLP 144
           SILR+IQRR+DNIDRAI+MGN P
Sbjct: 121 SILRSIQRRLDNIDRAISMGNRP 142

[Close]

BLAST of CSPI04G21470 vs. ExPASy TrEMBL
Match: A0A6J1FEP4 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita moschata OX=3662 GN=LOC111443260 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.9e-52
Identity = 119/143 (83.22%), Postives = 129/143 (90.21%), Query Frame = 0


Query: 1   MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLIN 60
           MHSPEK+ DD  ANEDS+VS ELETSI+ NGDL+E ND  N NL NSNALANGLSSMLIN
Sbjct: 1   MHSPEKVLDD-PANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLIN 60

Query: 61  IIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLN 120
           IIRDFDSKADDTLKSQ+ LSSSLDR+TTELDQLLE APFPFIMQHASRIS+VRKRVLSLN
Sbjct: 61  IIRDFDSKADDTLKSQSQLSSSLDRITTELDQLLEAAPFPFIMQHASRISSVRKRVLSLN 120

Query: 121 SILRTIQRRMDNIDRAITMGNLP 144
           SIL +IQRR+DNIDRAI+MGN P
Sbjct: 121 SILGSIQRRLDNIDRAISMGNRP 142

[Close]

BLAST of CSPI04G21470 vs. ExPASy TrEMBL
Match: A0A0A0L459 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucumis sativus OX=3659 GN=Csa_4G598520 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 6.4e-52
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLIN 60
           MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLIN
Sbjct: 1   MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLIN 60

Query: 61  IIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNV 113
           IIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNV
Sbjct: 61  IIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNV 112

[Close]

BLAST of CSPI04G21470 vs. ExPASy TrEMBL
Match: A0A6J1F9C2 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita moschata OX=3662 GN=LOC111443260 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 3.5e-50
Identity = 119/150 (79.33%), Postives = 129/150 (86.00%), Query Frame = 0


Query: 1   MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLIN 60
           MHSPEK+ DD  ANEDS+VS ELETSI+ NGDL+E ND  N NL NSNALANGLSSMLIN
Sbjct: 1   MHSPEKVLDD-PANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLIN 60

Query: 61  IIRDFDSKADDTLKSQNHLSSSLDRLT-------TELDQLLEDAPFPFIMQHASRISNVR 120
           IIRDFDSKADDTLKSQ+ LSSSLDR+T       TELDQLLE APFPFIMQHASRIS+VR
Sbjct: 61  IIRDFDSKADDTLKSQSQLSSSLDRITTVITSTFTELDQLLEAAPFPFIMQHASRISSVR 120

Query: 121 KRVLSLNSILRTIQRRMDNIDRAITMGNLP 144
           KRVLSLNSIL +IQRR+DNIDRAI+MGN P
Sbjct: 121 KRVLSLNSILGSIQRRLDNIDRAISMGNRP 149

[Close]

BLAST of CSPI04G21470 vs. NCBI nr
Match: XP_004144641.1 (uncharacterized protein LOC101218072 [Cucumis sativus] >XP_031740504.1 uncharacterized protein LOC101218072 [Cucumis sativus] >KAE8649780.1 hypothetical protein Csa_012268 [Cucumis sativus])

HSP 1 Score: 271.2 bits (692), Expect = 5.3e-69
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLIN 60
           MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLIN
Sbjct: 1   MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLIN 60

Query: 61  IIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLN 120
           IIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLN
Sbjct: 61  IIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLN 120

Query: 121 SILRTIQRRMDNIDRAITMGNLP 144
           SILRTIQRRMDNIDRAITMGNLP
Sbjct: 121 SILRTIQRRMDNIDRAITMGNLP 143

[Close]

BLAST of CSPI04G21470 vs. NCBI nr
Match: XP_008444284.1 (PREDICTED: uncharacterized protein LOC103487651 [Cucumis melo] >XP_008444285.1 PREDICTED: uncharacterized protein LOC103487651 [Cucumis melo] >XP_008444286.1 PREDICTED: uncharacterized protein LOC103487651 [Cucumis melo])

HSP 1 Score: 258.5 bits (659), Expect = 3.6e-65
Identity = 137/143 (95.80%), Postives = 139/143 (97.20%), Query Frame = 0


Query: 1   MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLIN 60
           MH PEKLDDDYSANEDSNVSAELETSI+  GDLQEGND ENKNLGNSNALANGLSSMLIN
Sbjct: 1   MHRPEKLDDDYSANEDSNVSAELETSISPIGDLQEGNDGENKNLGNSNALANGLSSMLIN 60

Query: 61  IIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLN 120
           IIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLN
Sbjct: 61  IIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLN 120

Query: 121 SILRTIQRRMDNIDRAITMGNLP 144
           SILRTIQRR+DNIDRAITMGNLP
Sbjct: 121 SILRTIQRRVDNIDRAITMGNLP 143

[Close]

BLAST of CSPI04G21470 vs. NCBI nr
Match: XP_038897522.1 (uncharacterized protein LOC120085558 isoform X6 [Benincasa hispida])

HSP 1 Score: 253.8 bits (647), Expect = 8.8e-64
Identity = 134/145 (92.41%), Postives = 141/145 (97.24%), Query Frame = 0


Query: 1   MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLIN 60
           MHSPEKLD DYSANE+SNV +ELETSI+ NGDLQEGNDSENKNLGNSNALANGLSSMLIN
Sbjct: 1   MHSPEKLDGDYSANEESNVLSELETSISPNGDLQEGNDSENKNLGNSNALANGLSSMLIN 60

Query: 61  IIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLN 120
           IIRDFDSKADDTLKSQ+ LSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLN
Sbjct: 61  IIRDFDSKADDTLKSQSQLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLN 120

Query: 121 SILRTIQRRMDNIDRAITMGNLPGD 146
           SILRTIQRR+DNIDRAI+MGNLPG+
Sbjct: 121 SILRTIQRRVDNIDRAISMGNLPGN 145

[Close]

BLAST of CSPI04G21470 vs. NCBI nr
Match: XP_038897518.1 (uncharacterized protein LOC120085558 isoform X3 [Benincasa hispida])

HSP 1 Score: 253.4 bits (646), Expect = 1.2e-63
Identity = 134/144 (93.06%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 1   MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLIN 60
           MHSPEKLD DYSANE+SNV +ELETSI+ NGDLQEGNDSENKNLGNSNALANGLSSMLIN
Sbjct: 1   MHSPEKLDGDYSANEESNVLSELETSISPNGDLQEGNDSENKNLGNSNALANGLSSMLIN 60

Query: 61  IIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLN 120
           IIRDFDSKADDTLKSQ+ LSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLN
Sbjct: 61  IIRDFDSKADDTLKSQSQLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLN 120

Query: 121 SILRTIQRRMDNIDRAITMGNLPG 145
           SILRTIQRR+DNIDRAI+MGNLPG
Sbjct: 121 SILRTIQRRVDNIDRAISMGNLPG 144

[Close]

BLAST of CSPI04G21470 vs. NCBI nr
Match: XP_038897519.1 (uncharacterized protein LOC120085558 isoform X4 [Benincasa hispida])

HSP 1 Score: 251.1 bits (640), Expect = 5.7e-63
Identity = 133/143 (93.01%), Postives = 139/143 (97.20%), Query Frame = 0


Query: 1   MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLIN 60
           MHSPEKLD DYSANE+SNV +ELETSI+ NGDLQEGNDSENKNLGNSNALANGLSSMLIN
Sbjct: 1   MHSPEKLDGDYSANEESNVLSELETSISPNGDLQEGNDSENKNLGNSNALANGLSSMLIN 60

Query: 61  IIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLN 120
           IIRDFDSKADDTLKSQ+ LSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLN
Sbjct: 61  IIRDFDSKADDTLKSQSQLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLN 120

Query: 121 SILRTIQRRMDNIDRAITMGNLP 144
           SILRTIQRR+DNIDRAI+MGNLP
Sbjct: 121 SILRTIQRRVDNIDRAISMGNLP 143

[Close]

BLAST of CSPI04G21470 vs. TAIR 10
Match: AT1G79070.1 (SNARE-associated protein-related )

HSP 1 Score: 117.1 bits (292), Expect = 1.2e-26
Identity = 66/126 (52.38%), Postives = 90/126 (71.43%), Query Frame = 0


Query: 13  ANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDT 72
           ++ D   SA+  TS   +   ++G        G   A+A GLS+ML ++I+DFDSKA DT
Sbjct: 5   SDSDHRDSADATTSSCQSTTAEDGQCG-----GGGEAMARGLSAMLESVIKDFDSKALDT 64

Query: 73  LKSQNHLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLNSILRTIQRRMDN 132
           L SQ+ LS SLDRL  ELDQLLE+AP PFI+QHASRIS+V++RV SLN +L+++QRR+DN
Sbjct: 65  LNSQDELSGSLDRLVQELDQLLENAPLPFIVQHASRISSVKQRVSSLNLVLKSVQRRIDN 124

Query: 133 IDRAIT 139
           ID  ++
Sbjct: 125 IDHMLS 125

The following BLAST results are available for this feature:

BLAST of CSPI04G21470 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G21470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BAU4	1.7e-65	95.80	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucumis melo OX...	[more]
A0A6J1IKP2	7.5e-53	83.22	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita maxim...	[more]
A0A6J1FEP4	2.9e-52	83.22	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita mosch...	[more]
A0A0A0L459	6.4e-52	100.00	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucumis sativus...	[more]
A0A6J1F9C2	3.5e-50	79.33	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita mosch...	[more]

BLAST of CSPI04G21470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144641.1	5.3e-69	100.00	uncharacterized protein LOC101218072 [Cucumis sativus] >XP_031740504.1 uncharact...	[more]
XP_008444284.1	3.6e-65	95.80	PREDICTED: uncharacterized protein LOC103487651 [Cucumis melo] >XP_008444285.1 P...	[more]
XP_038897522.1	8.8e-64	92.41	uncharacterized protein LOC120085558 isoform X6 [Benincasa hispida]	[more]
XP_038897518.1	1.2e-63	93.06	uncharacterized protein LOC120085558 isoform X3 [Benincasa hispida]	[more]
XP_038897519.1	5.7e-63	93.01	uncharacterized protein LOC120085558 isoform X4 [Benincasa hispida]	[more]

BLAST of CSPI04G21470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79070.1	1.2e-26	52.38	SNARE-associated protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 76..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
IPR028119	Snapin/Pallidin/Snn1	PFAM	PF14712	Snapin_Pallidin	coord: 49..133 e-value: 6.8E-22 score: 77.7
IPR017246	Snapin	PANTHER	PTHR31305	SNARE-ASSOCIATED PROTEIN SNAPIN	coord: 3..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G21470.1	CSPI04G21470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0031083	BLOC-1 complex