CSPI04G21140 (gene) Cucumber (PI 183967) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTCTACACTAGGTCAGACATTTTTTATGTAGTGGGAATAATCAGTAGATATCAGTCCAACCTAGGGTTAGACCACTGGACGGTGGTTAAAATAATTCTCAAGTATCTTAGGAGAACAAGAGACTACATGTTTAGGTATGGAGTTAAAGATTTGATCCTTACAGGATACACTTACTCTGATTTCCAAACCGATAAGGATTCTAGGAAATCCACGTCAGGATCAGTGTTCATCCTAAACGGAGAGTTGTGGTATGACATAGCATCAAGCAAGGATGCATTGCAAATTCTACTATGGACGTTGAATATGTCGCTACTTGTGAAGCAGGAAAAGAACCAATTTGGCTCAGAAAGTTCCTACATGATTTGGAAGTTGTTCCAAACATGA ATGCTCTACACTAGGTCAGACATTTTTTATGTAGTGGGAATAATCAGTAGATATCAGTCCAACCTAGGGTTAGACCACTGGACGGTGGTTAAAATAATTCTCAAGTATCTTAGGAGAACAAGAGACTACATGTTTAGGTATGGAGTTAAAGATTTGATCCTTACAGGATACACTTACTCTGATTTCCAAACCGATAAGGATTCTAGGAAATCCACGTCAGGATCAGTGTTCATCCTAAACGGAGAGTTGTGGTATGACATAGCATCAAGCAAGGATGCATTGCAAATTCTACTATGGACGTTGAATATGTCGCTACTTGTGAAGCAGGAAAAGAACCAATTTGGCTCAGAAAGTTCCTACATGATTTGGAAGTTGTTCCAAACATGA ATGCTCTACACTAGGTCAGACATTTTTTATGTAGTGGGAATAATCAGTAGATATCAGTCCAACCTAGGGTTAGACCACTGGACGGTGGTTAAAATAATTCTCAAGTATCTTAGGAGAACAAGAGACTACATGTTTAGGTATGGAGTTAAAGATTTGATCCTTACAGGATACACTTACTCTGATTTCCAAACCGATAAGGATTCTAGGAAATCCACGTCAGGATCAGTGTTCATCCTAAACGGAGAGTTGTGGTATGACATAGCATCAAGCAAGGATGCATTGCAAATTCTACTATGGACGTTGAATATGTCGCTACTTGTGAAGCAGGAAAAGAACCAATTTGGCTCAGAAAGTTCCTACATGATTTGGAAGTTGTTCCAAACATGA MLYTRSDIFYVVGIISRYQSNLGLDHWTVVKIILKYLRRTRDYMFRYGVKDLILTGYTYSDFQTDKDSRKSTSGSVFILNGELWYDIASSKDALQILLWTLNMSLLVKQEKNQFGSESSYMIWKLFQT* Homology
BLAST of CSPI04G21140 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 2.5e-12 Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = 0
BLAST of CSPI04G21140 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 4.8e-08 Identity = 33/84 (39.29%), Postives = 52/84 (61.90%), Query Frame = 0
BLAST of CSPI04G21140 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1) HSP 1 Score: 46.2 bits (108), Expect = 3.2e-04 Identity = 27/80 (33.75%), Postives = 42/80 (52.50%), Query Frame = 0
BLAST of CSPI04G21140 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3) HSP 1 Score: 45.1 bits (105), Expect = 7.2e-04 Identity = 30/81 (37.04%), Postives = 44/81 (54.32%), Query Frame = 0
BLAST of CSPI04G21140 vs. ExPASy TrEMBL
Match: A0A5A7V8W0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4427G00180 PE=4 SV=1) HSP 1 Score: 140.2 bits (352), Expect = 6.1e-30 Identity = 69/81 (85.19%), Postives = 71/81 (87.65%), Query Frame = 0
BLAST of CSPI04G21140 vs. ExPASy TrEMBL
Match: A0A5A7TKM4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00470 PE=4 SV=1) HSP 1 Score: 138.3 bits (347), Expect = 2.3e-29 Identity = 69/81 (85.19%), Postives = 70/81 (86.42%), Query Frame = 0
BLAST of CSPI04G21140 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1) HSP 1 Score: 137.9 bits (346), Expect = 3.0e-29 Identity = 68/81 (83.95%), Postives = 70/81 (86.42%), Query Frame = 0
BLAST of CSPI04G21140 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1) HSP 1 Score: 137.9 bits (346), Expect = 3.0e-29 Identity = 68/81 (83.95%), Postives = 70/81 (86.42%), Query Frame = 0
BLAST of CSPI04G21140 vs. ExPASy TrEMBL
Match: A0A5A7TJH9 (Putative Integrase core domain OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G00110 PE=4 SV=1) HSP 1 Score: 137.9 bits (346), Expect = 3.0e-29 Identity = 70/89 (78.65%), Postives = 73/89 (82.02%), Query Frame = 0
BLAST of CSPI04G21140 vs. NCBI nr
Match: KAA0062886.1 (gag/pol protein [Cucumis melo var. makuwa]) HSP 1 Score: 140.2 bits (352), Expect = 1.3e-29 Identity = 69/81 (85.19%), Postives = 71/81 (87.65%), Query Frame = 0
BLAST of CSPI04G21140 vs. NCBI nr
Match: KAA0042496.1 (gag/pol protein [Cucumis melo var. makuwa]) HSP 1 Score: 138.3 bits (347), Expect = 4.8e-29 Identity = 69/81 (85.19%), Postives = 70/81 (86.42%), Query Frame = 0
BLAST of CSPI04G21140 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa]) HSP 1 Score: 137.9 bits (346), Expect = 6.2e-29 Identity = 68/81 (83.95%), Postives = 70/81 (86.42%), Query Frame = 0
BLAST of CSPI04G21140 vs. NCBI nr
Match: KAA0043583.1 (putative Integrase core domain [Cucumis melo var. makuwa]) HSP 1 Score: 137.9 bits (346), Expect = 6.2e-29 Identity = 70/89 (78.65%), Postives = 73/89 (82.02%), Query Frame = 0
BLAST of CSPI04G21140 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa]) HSP 1 Score: 137.9 bits (346), Expect = 6.2e-29 Identity = 68/81 (83.95%), Postives = 70/81 (86.42%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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