CSPI02G24470 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G24470
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	DEAD-box ATP-dependent RNA helicase FANCM
Location	Chr2: 20998916 .. 21000366 (-)
RNA-Seq Expression	CSPI02G24470
Synteny	CSPI02G24470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAACGAAGGATCCACAAGATTCAAGGGTGATTATATTCTCAAATTTCAGGGGAAGTGTAAGGTGAAATATTTTCTTCAAGTTCAATTTTGTAGTATTCGATGATTTAGAAGTGCACACAATCCAATCAATTATTTATTCTTAAACTTGCCTCAATGTGCTAATACTACTTAGGGACATTATGAGTGCACTATCCAAGATTGAAGACATTGTCAGAGCTACTGAGTTTATTGGTCAAAGCTCAGGTTTGCAATTTCATTTTTCTTCATTTTTGGTTATTATTTAGTTAATGATATAGTATCTTTTGGGATAATCTTGTTTTTTTTTTAAAAAAAACTGAGACAAACCTCTTTATTAATGATAATAAATGAGATTTAGGCTCAAAATACAAGAGTATTATACTAAGAGCAAGAGAACTAGGGGAGAATACAGTCAAAGACTAAAACAGAAGCTAAACTTGGGCAACAAAAAATGGCAATCCAAAGGAAATCAGTATTCTTTTGAGAACTTATGTACACCAGTTAATTACTAGTTTAGCCGTGAACTTTCAAAATTGTGTTTTTATAGTTTATGAAACTCGTTGATAAAAGTTACAAAACATTGAAAGTTTAGAGGCTTATGATCTCTTTTCAAATTCTGGGACCTCTCTTTAGACAACCCTAAAACTTGAACCGTCACTCTTGTAATTTGACCCTTCATTAAATTTATCATACCAACCAAATTAAACTTTTGGGTTGATTGGTTAGTTAACAATATTGGATACGTTTTTCTTTATGTACATAAGCACATATGAGATGATTATATTGTAGAGCTTCTTCTTTGGCCTATTTAATTTTATCTGGATAGTCCTATTGTTGAAAAGCTAATGAGAAAAGTTTGTCAATCCGAATTGGGCTTAAATATATCTAAATTGCTCCAGTTATGTATGGTTTGGTATTTATAGAGCTTGGACTTAATGCTTAAATTACACATTTTATTGATGAAATGAAAAGAGACTAATGTTTGAATTACAAAGAAGCTAGAAATCACAAGAACTAGGGATCAGCATGCTTAAATATATCTAGCTTGGACTTCTTCTATTTGTTTGGAAATATTTTTGACGTTGGACAAGCTACTTAGTCTGAGTATTGCAGGAAAATCTCTCAAAGGTCAATCACAAAAGGTTCAACAGGCTGTTTTGGAGGTAGGCAATCCGGGTTTGTGGTTACTATCCCTATTAACTACCTGCACTGAATTTATACTTTTCAACAGAAATTTCGTGCTGGCGGGTTCAATGTCATTGTTGCCACATGCATTGGTGAAGAAGGTCTTGATATAATGGAAGTCGATCTTGTTATCTGTTTCGATGCAAATATTTCACCAATAAGAATGATTCAGCGGATGGGTAGAACCGGAAGGAAGCATGATGGAAGAGTGGATATCCTTGAACATTCAATTATCAATCAATCTCAT

mRNA sequence

GAAACGAAGGATCCACAAGATTCAAGGGTGATTATATTCTCAAATTTCAGGGGAAGTGTAAGGGACATTATGAGTGCACTATCCAAGATTGAAGACATTGTCAGAGCTACTGAGTTTATTGGTCAAAGCTCAGGAAAATCTCTCAAAGGTCAATCACAAAAGGTTCAACAGGCTGTTTTGGAGAAATTTCGTGCTGGCGGGTTCAATGTCATTGTTGCCACATGCATTGGTGAAGAAGGTCTTGATATAATGGAAGTCGATCTTGTTATCTGTTTCGATGCAAATATTTCACCAATAAGAATGATTCAGCGGATGGGTAGAACCGGAAGGAAGCATGATGGAAGAGTGGATATCCTTGAACATTCAATTATCAATCAATCTCAT

Coding sequence (CDS)

GAAACGAAGGATCCACAAGATTCAAGGGTGATTATATTCTCAAATTTCAGGGGAAGTGTAAGGGACATTATGAGTGCACTATCCAAGATTGAAGACATTGTCAGAGCTACTGAGTTTATTGGTCAAAGCTCAGGAAAATCTCTCAAAGGTCAATCACAAAAGGTTCAACAGGCTGTTTTGGAGAAATTTCGTGCTGGCGGGTTCAATGTCATTGTTGCCACATGCATTGGTGAAGAAGGTCTTGATATAATGGAAGTCGATCTTGTTATCTGTTTCGATGCAAATATTTCACCAATAAGAATGATTCAGCGGATGGGTAGAACCGGAAGGAAGCATGATGGAAGAGTGGATATCCTTGAACATTCAATTATCAATCAATCTCAT

Protein sequence

ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDILEHSIINQSH

Homology

[Close]

BLAST of CSPI02G24470 vs. ExPASy Swiss-Prot
Match: I3XHK1 (DEAD-box ATP-dependent RNA helicase FANCM OS=Arabidopsis thaliana OX=3702 GN=FANCM PE=2 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 3.5e-51
Identity = 101/119 (84.87%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 60
           + KDP+ SRVIIFSNFRGSVRDIM+ALS I D+V+ATEFIGQSSGK+LKGQSQK+QQAVL
Sbjct: 463 KVKDPKTSRVIIFSNFRGSVRDIMNALSNIGDMVKATEFIGQSSGKTLKGQSQKIQQAVL 522

Query: 61  EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL 120
           EKFRAGGFNVIVAT IGEEGLDIMEVDLVICFDAN+SP+RMIQRMGRTGRK++GRV +L
Sbjct: 523 EKFRAGGFNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKNNGRVVVL 581

[Close]

BLAST of CSPI02G24470 vs. ExPASy Swiss-Prot
Match: A0A1D5PRR9 (Fanconi anemia group M protein OS=Gallus gallus OX=9031 GN=FANCM PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.3e-33
Identity = 70/126 (55.56%), Postives = 93/126 (73.81%), Query Frame = 0


Query: 7   DSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAG 66
           D+RV+IFS+FR SV++I   LS+   +VR   F+G S+GKS KG +QK Q  V+++FR G
Sbjct: 475 DTRVMIFSSFRDSVQEIAEMLSRFSPVVRVMTFVGHSTGKSTKGFTQKEQLEVVKRFREG 534

Query: 67  GFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL-----EH 126
           G+N +V+TC+GEEGLDI EVDL+ICFDA  SPIR++QRMGRTGR+  GRV ++     E 
Sbjct: 535 GYNTLVSTCVGEEGLDIGEVDLIICFDAQKSPIRLVQRMGRTGRQRQGRVVVILAEGREE 594

Query: 127 SIINQS 128
              NQS
Sbjct: 595 RTYNQS 600

[Close]

BLAST of CSPI02G24470 vs. ExPASy Swiss-Prot
Match: Q8IYD8 (Fanconi anemia group M protein OS=Homo sapiens OX=9606 GN=FANCM PE=1 SV=2)

HSP 1 Score: 142.1 bits (357), Expect = 4.3e-33
Identity = 71/130 (54.62%), Postives = 96/130 (73.85%), Query Frame = 0


Query: 3   KDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEK 62
           K   ++RV+IFS+FR SV++I   LS+ + I+R   F+G +SGKS KG +QK Q  V+++
Sbjct: 472 KKRDETRVMIFSSFRDSVQEIAEMLSQHQPIIRVMTFVGHASGKSTKGFTQKEQLEVVKQ 531

Query: 63  FRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL--- 122
           FR GG+N +V+TC+GEEGLDI EVDL+ICFD+  SPIR++QRMGRTGRK  GR+ I+   
Sbjct: 532 FRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQKSPIRLVQRMGRTGRKRQGRIVIILSE 591

Query: 123 --EHSIINQS 128
             E  I NQS
Sbjct: 592 GREERIYNQS 601

[Close]

BLAST of CSPI02G24470 vs. ExPASy Swiss-Prot
Match: Q8BGE5 (Fanconi anemia group M protein homolog OS=Mus musculus OX=10090 GN=Fancm PE=1 SV=3)

HSP 1 Score: 136.7 bits (343), Expect = 1.8e-31
Identity = 69/130 (53.08%), Postives = 91/130 (70.00%), Query Frame = 0


Query: 3   KDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEK 62
           K   +SRV+IFS+FR SV +I   L +   ++R   F+G +SGK+ KG +QK Q  V+ +
Sbjct: 457 KKCHESRVMIFSSFRDSVEEIAEMLLQHRPVIRVMTFVGHASGKNTKGFTQKEQLQVVRQ 516

Query: 63  FRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL--- 122
           FR GG+N +V+TC+GEEGLDI EVDL+ICFDA  SPIR+IQRMGRTGRK  GR+ ++   
Sbjct: 517 FRDGGYNTLVSTCVGEEGLDIGEVDLIICFDAQKSPIRLIQRMGRTGRKRQGRIVVILAE 576

Query: 123 --EHSIINQS 128
             E    NQS
Sbjct: 577 GREERTYNQS 586

[Close]

BLAST of CSPI02G24470 vs. ExPASy Swiss-Prot
Match: A2Q8R2 (ATP-dependent DNA helicase mph1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=mph1 PE=3 SV=2)

HSP 1 Score: 131.3 bits (329), Expect = 7.6e-30
Identity = 61/119 (51.26%), Postives = 85/119 (71.43%), Query Frame = 0


Query: 1   ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 60
           E KD   +RV+IF +FR S  ++   L + E ++R   F+GQSS K  +G  QK Q  ++
Sbjct: 686 ENKDQPATRVMIFVHFRDSAEEVTRVLKRYEPMIRPHVFVGQSSAKGSEGMGQKTQLDIV 745

Query: 61  EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL 120
           +KF+ G +N IVAT IGEEGLDI EVDL++C+D++ SPIRM+QRMGRTGRK  G++ +L
Sbjct: 746 QKFKKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGRKRSGKITLL 804

[Close]

BLAST of CSPI02G24470 vs. ExPASy TrEMBL
Match: A0A0A0LQJ7 (Helicase C-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G393190 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 9.9e-57
Identity = 117/119 (98.32%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 60
           ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL
Sbjct: 7   ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 66

Query: 61  EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL 120
           EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRV +L
Sbjct: 67  EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVVVL 125

[Close]

BLAST of CSPI02G24470 vs. ExPASy TrEMBL
Match: A0A1S3B3H7 (Fanconi anemia group M protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485372 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.9e-56
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 60
           +TKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL
Sbjct: 469 KTKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 528

Query: 61  EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL 120
           EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRV +L
Sbjct: 529 EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVVVL 587

[Close]

BLAST of CSPI02G24470 vs. ExPASy TrEMBL
Match: A0A1S4DTZ2 (Fanconi anemia group M protein isoform X5 OS=Cucumis melo OX=3656 GN=LOC103485372 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.9e-56
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 60
           +TKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL
Sbjct: 483 KTKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 542

Query: 61  EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL 120
           EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRV +L
Sbjct: 543 EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVVVL 601

[Close]

BLAST of CSPI02G24470 vs. ExPASy TrEMBL
Match: A0A1S4DUR1 (Fanconi anemia group M protein isoform X3 OS=Cucumis melo OX=3656 GN=LOC103485372 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.9e-56
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 60
           +TKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL
Sbjct: 483 KTKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 542

Query: 61  EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL 120
           EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRV +L
Sbjct: 543 EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVVVL 601

[Close]

BLAST of CSPI02G24470 vs. ExPASy TrEMBL
Match: A0A1S3B2A7 (Fanconi anemia group M protein isoform X4 OS=Cucumis melo OX=3656 GN=LOC103485372 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.9e-56
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 60
           +TKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL
Sbjct: 483 KTKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 542

Query: 61  EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL 120
           EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRV +L
Sbjct: 543 EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVVVL 601

[Close]

BLAST of CSPI02G24470 vs. NCBI nr
Match: XP_008441145.1 (PREDICTED: Fanconi anemia group M protein isoform X1 [Cucumis melo])

HSP 1 Score: 227.6 bits (579), Expect = 5.9e-56
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 60
           +TKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL
Sbjct: 483 KTKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 542

Query: 61  EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL 120
           EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRV +L
Sbjct: 543 EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVVVL 601

[Close]

BLAST of CSPI02G24470 vs. NCBI nr
Match: XP_016899456.1 (PREDICTED: Fanconi anemia group M protein isoform X5 [Cucumis melo])

HSP 1 Score: 227.6 bits (579), Expect = 5.9e-56
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 60
           +TKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL
Sbjct: 483 KTKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 542

Query: 61  EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL 120
           EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRV +L
Sbjct: 543 EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVVVL 601

[Close]

BLAST of CSPI02G24470 vs. NCBI nr
Match: XP_011649875.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X1 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 5.9e-56
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 60
           +TKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL
Sbjct: 483 KTKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 542

Query: 61  EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL 120
           EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRV +L
Sbjct: 543 EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVVVL 601

[Close]

BLAST of CSPI02G24470 vs. NCBI nr
Match: KAE8652234.1 (hypothetical protein Csa_022145 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 5.9e-56
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 60
           +TKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL
Sbjct: 483 KTKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 542

Query: 61  EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL 120
           EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRV +L
Sbjct: 543 EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVVVL 601

[Close]

BLAST of CSPI02G24470 vs. NCBI nr
Match: XP_031736812.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X7 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 5.9e-56
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 60
           +TKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL
Sbjct: 483 KTKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 542

Query: 61  EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDIL 120
           EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRV +L
Sbjct: 543 EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVVVL 601

[Close]

BLAST of CSPI02G24470 vs. TAIR 10
Match: AT1G35530.1 (DEAD/DEAH box RNA helicase family protein )

HSP 1 Score: 200.3 bits (508), Expect = 9.4e-52
Identity = 99/116 (85.34%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 1   ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 60
           + KDP+ SRVIIFSNFRGSVRDIM+ALS I D+V+ATEFIGQSSGK+LKGQSQK+QQAVL
Sbjct: 461 KVKDPKTSRVIIFSNFRGSVRDIMNALSNIGDMVKATEFIGQSSGKTLKGQSQKIQQAVL 520

Query: 61  EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRV 117
           EKFRAGGFNVIVAT IGEEGLDIMEVDLVICFDAN+SP+RMIQRMGRTGRK++GR+
Sbjct: 521 EKFRAGGFNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKNNGRI 576

[Close]

BLAST of CSPI02G24470 vs. TAIR 10
Match: AT1G35530.2 (DEAD/DEAH box RNA helicase family protein )

HSP 1 Score: 199.1 bits (505), Expect = 2.1e-51
Identity = 99/115 (86.09%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVL 60
           + KDP+ SRVIIFSNFRGSVRDIM+ALS I D+V+ATEFIGQSSGK+LKGQSQK+QQAVL
Sbjct: 461 KVKDPKTSRVIIFSNFRGSVRDIMNALSNIGDMVKATEFIGQSSGKTLKGQSQKIQQAVL 520

Query: 61  EKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGR 116
           EKFRAGGFNVIVAT IGEEGLDIMEVDLVICFDAN+SP+RMIQRMGRTGRK++GR
Sbjct: 521 EKFRAGGFNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKNNGR 575

[Close]

BLAST of CSPI02G24470 vs. TAIR 10
Match: AT3G03300.1 (dicer-like 2 )

HSP 1 Score: 53.5 bits (127), Expect = 1.4e-07
Identity = 32/80 (40.00%), Postives = 47/80 (58.75%), Query Frame = 0


Query: 41  GQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR 100
           G +SG  L+ Q++K Q  ++E FR G  N+IVAT I EEGLD+   +LVI FD   +   
Sbjct: 424 GNNSG--LQNQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNICS 483

Query: 101 MIQRMGRTGRKHDGRVDILE 121
            IQ  GR   ++   + ++E
Sbjct: 484 FIQSRGRARMQNSDYLMMVE 501

[Close]

BLAST of CSPI02G24470 vs. TAIR 10
Match: AT3G03300.2 (dicer-like 2 )

HSP 1 Score: 53.5 bits (127), Expect = 1.4e-07
Identity = 32/80 (40.00%), Postives = 47/80 (58.75%), Query Frame = 0


Query: 41  GQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR 100
           G +SG  L+ Q++K Q  ++E FR G  N+IVAT I EEGLD+   +LVI FD   +   
Sbjct: 410 GNNSG--LQNQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNICS 469

Query: 101 MIQRMGRTGRKHDGRVDILE 121
            IQ  GR   ++   + ++E
Sbjct: 470 FIQSRGRARMQNSDYLMMVE 487

[Close]

BLAST of CSPI02G24470 vs. TAIR 10
Match: AT3G03300.3 (dicer-like 2 )

HSP 1 Score: 53.5 bits (127), Expect = 1.4e-07
Identity = 32/80 (40.00%), Postives = 47/80 (58.75%), Query Frame = 0


Query: 41  GQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR 100
           G +SG  L+ Q++K Q  ++E FR G  N+IVAT I EEGLD+   +LVI FD   +   
Sbjct: 424 GNNSG--LQNQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNICS 483

Query: 101 MIQRMGRTGRKHDGRVDILE 121
            IQ  GR   ++   + ++E
Sbjct: 484 FIQSRGRARMQNSDYLMMVE 501

The following BLAST results are available for this feature:

BLAST of CSPI02G24470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
I3XHK1	3.5e-51	84.87	DEAD-box ATP-dependent RNA helicase FANCM OS=Arabidopsis thaliana OX=3702 GN=FAN...	[more]
A0A1D5PRR9	4.3e-33	55.56	Fanconi anemia group M protein OS=Gallus gallus OX=9031 GN=FANCM PE=1 SV=1	[more]
Q8IYD8	4.3e-33	54.62	Fanconi anemia group M protein OS=Homo sapiens OX=9606 GN=FANCM PE=1 SV=2	[more]
Q8BGE5	1.8e-31	53.08	Fanconi anemia group M protein homolog OS=Mus musculus OX=10090 GN=Fancm PE=1 SV...	[more]
A2Q8R2	7.6e-30	51.26	ATP-dependent DNA helicase mph1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A...	[more]

BLAST of CSPI02G24470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQJ7	9.9e-57	98.32	Helicase C-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_...	[more]
A0A1S3B3H7	2.9e-56	97.48	Fanconi anemia group M protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC10348537...	[more]
A0A1S4DTZ2	2.9e-56	97.48	Fanconi anemia group M protein isoform X5 OS=Cucumis melo OX=3656 GN=LOC10348537...	[more]
A0A1S4DUR1	2.9e-56	97.48	Fanconi anemia group M protein isoform X3 OS=Cucumis melo OX=3656 GN=LOC10348537...	[more]
A0A1S3B2A7	2.9e-56	97.48	Fanconi anemia group M protein isoform X4 OS=Cucumis melo OX=3656 GN=LOC10348537...	[more]

BLAST of CSPI02G24470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441145.1	5.9e-56	97.48	PREDICTED: Fanconi anemia group M protein isoform X1 [Cucumis melo]	[more]
XP_016899456.1	5.9e-56	97.48	PREDICTED: Fanconi anemia group M protein isoform X5 [Cucumis melo]	[more]
XP_011649875.1	5.9e-56	97.48	DEAD-box ATP-dependent RNA helicase FANCM isoform X1 [Cucumis sativus]	[more]
KAE8652234.1	5.9e-56	97.48	hypothetical protein Csa_022145 [Cucumis sativus]	[more]
XP_031736812.1	5.9e-56	97.48	DEAD-box ATP-dependent RNA helicase FANCM isoform X7 [Cucumis sativus]	[more]

BLAST of CSPI02G24470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G35530.1	9.4e-52	85.34	DEAD/DEAH box RNA helicase family protein	[more]
AT1G35530.2	2.1e-51	86.09	DEAD/DEAH box RNA helicase family protein	[more]
AT3G03300.1	1.4e-07	40.00	dicer-like 2	[more]
AT3G03300.2	1.4e-07	40.00	dicer-like 2	[more]
AT3G03300.3	1.4e-07	40.00	dicer-like 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 22..112 e-value: 1.6E-16 score: 70.9
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 7..111 e-value: 1.2E-19 score: 70.7
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 1..128 score: 14.786234
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 1..127 e-value: 1.1E-38 score: 134.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 6..117
None	No IPR available	PANTHER	PTHR14025	FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER	coord: 3..116
IPR039686	FANCM/Mph1-like	PANTHER	PTHR14025:SF20	FANCONI ANEMIA GROUP M PROTEIN	coord: 3..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G24470.1	CSPI02G24470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032508	DNA duplex unwinding
biological_process	GO:0006281	DNA repair
molecular_function	GO:0043138	3'-5' DNA helicase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016787	hydrolase activity