Cucsat.G15680 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G15680
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	squamosa promoter-binding-like protein 13A
Location	ctg2009: 5706337 .. 5708722 (+)
RNA-Seq Expression	Cucsat.G15680
Synteny	Cucsat.G15680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAACAAATTTTAAATTTAATCTTTTATGCTATTTATGGTAATTCTATTTGGAAAAAAATAGTTTTTTTTTTTATTATATGCTTTGGAAACATATTCATTTATTTTATTAAAATAATTATTTTGGTAAGAATTAAGTTGGATGACTAAATTTGAAGATGGACAAATTTCAATTTATAGACGAATATGTAGGGTGGATTTGTATCAATAAAAACTACAAATTAATAATATTGTATCAATTATAACCTAAACTTACAATTTAGATGATGAAGTTAAATAAATTTCAATTTAAATCCTCGACTATATTTAGTTGGGTTATAGTGGACAAAATTATTACAAATTTGGTTTTTAAAAATATATAAGAAAGGGAGATTGAAATTAAATACCAAAAAAGAAAGAAAAAAAAAAGAAAGTAAAGAGCAATAAGCTTAAACAAAAACTTGAATTTATTTAAAAAGTATTTCCTAAAGTGGAAGGAAAGAGCATCAAAAGATAGATGAGAAGACCAACTAATCTCAGTGTCTTATATTGTCTTTCTATTCTTCTCTTTGCTTAAAATAAATTTTAGGTTTAAAAATTGTTAATGCTGTGATGACCATCACCCAATTTTCTTTTCTGTCTTCTTCCTCCCTATTTCTCTCTCTTCTCTTCCTAAGTAATTATTGATATTGCAACCAACTTTGGGCATTGATGGGAATAGTAAAAGATGGTAGCTTTCTAAATCCAATTCTAAACCCATTTTCTTGGAAGTTTCTGTTTGTCATATTATGGCAAAATGGGAACTTCACTTCTCTTTCTTTCCACTATTAATTCACTCCCTCCACTCTCTCTCTCCCTCTCTCTGTTCAATTTGGAGTAAGAAATGAGAAAACAAAACTCCCTTACAAAACCTCTAAATTCATTTGCTTTTTTCTTTATATTTTTTAATCCAATCTTACTCCTTAATCAAAAAAGGGTTTAGGGAAATGAAAATTTTGGGTATAATTAACTAAATTGCTTTTGGGATTTCATATTCCTCCCAAAGCTTTCCATCAAAACTTCTTTCATCTACTTCTGTTCTACTACCACATACATACACACACACCCCAACCAGTGTCCTCCTGTCTCTTTTATATCATCCAACCATTCTCTATCCCCTTCACTCTCTATTTTCTATTTCTTTTTTTAATTCAAAAAGCGAAAAGACCCATTTGAAGACTTGGGTATGTTCAATTGGAGAGAAGCAGCAGGCAGAAATCCAACAAGTCTTGTTTATGGATTGGGGTTGGGGAAAGTTTTCTGGAGAACCCATTTTTCCTGAAAACAAACAGAATCCTCCCTCCACTTTCTCTGACTCGATTGGCTCCAACAAGGGTTCCAGTCAAGAAAGTTCTTCCTCTCATGGATCCTCTAAAAGGACTCGATTACTCCATGCCAACCAAAACCAGACGTGTTTGGTCGATGGATGTGACACTGACCTCACCAATTGCAAGGATTATCATCGACGCCATAGGGTATGCGATTCTCACTCCAAAACCCCTGTTGTGATGGTTAGAGGAGAGGAGAAACGATTCTGTCAACAGTGTAGCAGGTAAAAACAACCAAAAATAATTGATGGATTTTTGTTTCTTTTGTTTGGATTTTGCCCCAAAATGTATGGTTTGTTGATTGTTCTTGAGTAAAAGTATTGTAGATTCCATTCGCTTGGTGAGTTTGATGAGGTGAAGAGGAGCTGTAGGAAGCGGCTTGATGGCCATAATCGACGTCGGAGGAAGCCTCAGCCTGAATCACTGTTTATGAGTTCAAGTGATTTTCTGTCAAATTGTAAAGGTTAGCAACTGATTTTTGTTTCGAAATATACCATAGAAATGTGTTGATTGATGGATGTGGTTGTTTGGAGGGGGGAAACTAAAAAGGAAACAAAAAATGATTCATGATTGTTGTTGTGATTTGTAAAATTGGGTTATCCTTCTCAAATCCATAGGTCCAATTGTGCTGCAGTTCAGTGATCAACAGATTCATCATGTGTCCGAGGAAATTGGTAGGAGTTTATGGCCTGTTAGGACTGAAGGTGAAAAGAAATCTTCAATGGTTCCATCAAATTCCTCTGCTTACTTCAGTTATGGAAGAGGAGATAACAAAGAGTTGCCATTTTTCCTGCATAAAAATGGCAAAAGACAAAGCAAGCAAATAGTTTCTTCTCAGCTGTCTTTCAATCAGCAACTTCCTAATGTAATCTCTCAGGGTAGTGAGGTGGACAACCAGAAACCAGTGACCACCGATACTTCGCCCGAGGATTCGGGTTGTGCTCTCTATCTTCTGTCATCACGCACAGTGCAAGCTCACTCGGATGCTGGCTTGAGCTCTTTGGTTCAGTCCCATCTGAGTGTTCCAGTCCAAACTCATGAGACTGAGCTGCATTTCAGTAGTCTAAGTGACTTCTCTGGCTCCTTTGACTCTAAGGACAAGCCTGTTTCTTCTCAGTTGGGTCTTGAAATGGAGGAAGAATCTGATGGTTTGTTCCAAAGTGAGGCTCCCCATAAGTTTCCCATTTCTTGGGAGTAGTTTGCTTCAACAAACTTGTCTGTTTTATTTTTATGGCTTTAGTCCAAGACTTGCTTTTGAATCTGAACTTCTGTGTTTTGTGATTGTAGACAGCAAATGTATTTTGCTGGTTTGTTTTCTCAGTTTCCGTAACTGCTTTGACATTATCATTTACACTAGGATTCACCTCATTGGGAGCACGTTACAATATCTTCGTGCCATTTTGTAACACCTACGGTGAGGGATCCTAGTGATGAATTATCGTTCTGTTCATCTTTTAGACTTGCTTCTTGAATCATGTTTTCTTCAAGTCTCTGTGTTCTTACACATCCTTGATCATTTTGAGTCTTGATGCTGGATTTTTATACTTTGTGATGAATGTCATCTTTAAGCTAGTTGAGTCTATGGGATTTCGTTAAATGGTTTTACTTGGTAGTATCATTTTAAATATTGATGTTTTCAAA

Coding sequence (CDS)

ATGGATTGGGGTTGGGGAAAGTTTTCTGGAGAACCCATTTTTCCTGAAAACAAACAGAATCCTCCCTCCACTTTCTCTGACTCGATTGGCTCCAACAAGGGTTCCAGTCAAGAAAGTTCTTCCTCTCATGGATCCTCTAAAAGGACTCGATTACTCCATGCCAACCAAAACCAGACGTGTTTGGTCGATGGATGTGACACTGACCTCACCAATTGCAAGGATTATCATCGACGCCATAGGGTATGCGATTCTCACTCCAAAACCCCTGTTGTGATGGTTAGAGGAGAGGAGAAACGATTCTGTCAACAGTGTAGCAGATTCCATTCGCTTGGTGAGTTTGATGAGGTGAAGAGGAGCTGTAGGAAGCGGCTTGATGGCCATAATCGACGTCGGAGGAAGCCTCAGCCTGAATCACTGTTTATGAGTTCAAGTGATTTTCTGTCAAATTGTAAAGGTCCAATTGTGCTGCAGTTCAGTGATCAACAGATTCATCATGTGTCCGAGGAAATTGGTAGGAGTTTATGGCCTGTTAGGACTGAAGGTGAAAAGAAATCTTCAATGGTTCCATCAAATTCCTCTGCTTACTTCAGTTATGGAAGAGGAGATAACAAAGAGTTGCCATTTTTCCTGCATAAAAATGGCAAAAGACAAAGCAAGCAAATAGTTTCTTCTCAGCTGTCTTTCAATCAGCAACTTCCTAATGTAATCTCTCAGGGTAGTGAGGTGGACAACCAGAAACCAGTGACCACCGATACTTCGCCCGAGGATTCGGGTTGTGCTCTCTATCTTCTGTCATCACGCACAGTGCAAGCTCACTCGGATGCTGGCTTGAGCTCTTTGGTTCAGTCCCATCTGAGTGTTCCAGTCCAAACTCATGAGACTGAGCTGCATTTCAGTAGTCTAAGTGACTTCTCTGGCTCCTTTGACTCTAAGGACAAGCCTGTTTCTTCTCAGTTGGGTCTTGAAATGGAGGAAGAATCTGATGGTTTGTTCCAAAGTGAGGCTCCCCATAAGTTTCCCATTTCTTGGGAGTAG

Protein sequence

MDWGWGKFSGEPIFPENKQNPPSTFSDSIGSNKGSSQESSSSHGSSKRTRLLHANQNQTCLVDGCDTDLTNCKDYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSSDFLSNCKGPIVLQFSDQQIHHVSEEIGRSLWPVRTEGEKKSSMVPSNSSAYFSYGRGDNKELPFFLHKNGKRQSKQIVSSQLSFNQQLPNVISQGSEVDNQKPVTTDTSPEDSGCALYLLSSRTVQAHSDAGLSSLVQSHLSVPVQTHETELHFSSLSDFSGSFDSKDKPVSSQLGLEMEEESDGLFQSEAPHKFPISWE

Homology

[Close]

BLAST of Cucsat.G15680 vs. ExPASy Swiss-Prot
Match: B9DI20 (Squamosa promoter-binding-like protein 13A OS=Arabidopsis thaliana OX=3702 GN=SPL13A PE=1 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.6e-34
Identity = 80/141 (56.74%), Postives = 96/141 (68.09%), Query Frame = 0


Query: 8   FSGEPIFPENKQNPPSTFSD-----SIGSNKGS--SQESSSSHGSSKRTR--LLHANQNQ 67
           FS +     N  N  S F D     S+   K S  ++   S   SSKRTR   +  NQ  
Sbjct: 40  FSFDLKLGRNIGNSSSVFGDTEQVISLSKWKDSALAKPEGSRSSSSKRTRGNGVGTNQMP 99

Query: 68  TCLVDGCDTDLTNCKDYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKR 127
            CLVDGCD+D +NC++YH+RH+VCD HSKTPVV + G ++RFCQQCSRFH+L EFDE KR
Sbjct: 100 ICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGHKQRFCQQCSRFHALEEFDEGKR 159

Query: 128 SCRKRLDGHNRRRRKPQPESL 140
           SCRKRLDGHNRRRRKPQPE +
Sbjct: 160 SCRKRLDGHNRRRRKPQPEHI 180

[Close]

BLAST of Cucsat.G15680 vs. ExPASy Swiss-Prot
Match: P0DI11 (Squamosa promoter-binding-like protein 13B OS=Arabidopsis thaliana OX=3702 GN=SPL13B PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.6e-34
Identity = 80/141 (56.74%), Postives = 96/141 (68.09%), Query Frame = 0


Query: 8   FSGEPIFPENKQNPPSTFSD-----SIGSNKGS--SQESSSSHGSSKRTR--LLHANQNQ 67
           FS +     N  N  S F D     S+   K S  ++   S   SSKRTR   +  NQ  
Sbjct: 40  FSFDLKLGRNIGNSSSVFGDTEQVISLSKWKDSALAKPEGSRSSSSKRTRGNGVGTNQMP 99

Query: 68  TCLVDGCDTDLTNCKDYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKR 127
            CLVDGCD+D +NC++YH+RH+VCD HSKTPVV + G ++RFCQQCSRFH+L EFDE KR
Sbjct: 100 ICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGHKQRFCQQCSRFHALEEFDEGKR 159

Query: 128 SCRKRLDGHNRRRRKPQPESL 140
           SCRKRLDGHNRRRRKPQPE +
Sbjct: 160 SCRKRLDGHNRRRRKPQPEHI 180

[Close]

BLAST of Cucsat.G15680 vs. ExPASy Swiss-Prot
Match: Q0J0K1 (Squamosa promoter-binding-like protein 18 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL18 PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.1e-32
Identity = 66/94 (70.21%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 56  QNQTCLVDGCDTDLTNCKDYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDE 115
           Q  +C VDGC  DL+  +DYHRRH+VC+ HSKTPVV+V G E RFCQQCSRFH LGEFDE
Sbjct: 111 QCPSCAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDE 170

Query: 116 VKRSCRKRLDGHNRRRRKPQPESLFMSSSDFLSN 150
            KRSCRKRLDGHNRRRRKPQ +S  MSS  F+++
Sbjct: 171 AKRSCRKRLDGHNRRRRKPQADS--MSSGSFMTS 202

[Close]

BLAST of Cucsat.G15680 vs. ExPASy Swiss-Prot
Match: Q49I55 (Teosinte glume architecture 1 OS=Zea mays OX=4577 GN=TGA1 PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.3e-32
Identity = 69/118 (58.47%), Postives = 87/118 (73.73%), Query Frame = 0


Query: 37  QESSSSHGSSKRTRLL-----HANQNQTCLVDGCDTDLTNCKDYHRRHRVCDSHSKTPVV 96
           +E  ++ G++KR R          Q  +C VDGC  DL  C+DYHRRH+VC++HSKTPVV
Sbjct: 76  REREAAAGAAKRPRPAGPGGQQQQQCPSCAVDGCRADLGKCRDYHRRHKVCEAHSKTPVV 135

Query: 97  MVRGEEKRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSSDFLSN 150
           +V G E RFCQQCSRFH L EFD  KRSCRKRLDGHNRRRRKPQP++  M+S+ F+++
Sbjct: 136 VVAGREMRFCQQCSRFHLLAEFDADKRSCRKRLDGHNRRRRKPQPDT--MASASFIAS 191

[Close]

BLAST of Cucsat.G15680 vs. ExPASy Swiss-Prot
Match: Q49I57 (Teosinte glume architecture 1 OS=Zea mays OX=4577 GN=TGA1 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.3e-32
Identity = 69/119 (57.98%), Postives = 87/119 (73.11%), Query Frame = 0


Query: 37  QESSSSHGSSKRTR------LLHANQNQTCLVDGCDTDLTNCKDYHRRHRVCDSHSKTPV 96
           +E  ++ G++KR R           Q  +C VDGC  DL  C+DYHRRH+VC++HSKTPV
Sbjct: 76  REREAAAGAAKRPRPAGPGGQQQQQQCPSCAVDGCRADLGKCRDYHRRHKVCEAHSKTPV 135

Query: 97  VMVRGEEKRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSSDFLSN 150
           V+V G E RFCQQCSRFH L EFD  KRSCRKRLDGHNRRRRKPQP++  M+S+ F+++
Sbjct: 136 VVVAGREMRFCQQCSRFHLLAEFDADKRSCRKRLDGHNRRRRKPQPDT--MASASFIAS 192

[Close]

BLAST of Cucsat.G15680 vs. NCBI nr
Match: XP_004148013.1 (squamosa promoter-binding-like protein 13A [Cucumis sativus] >KGN58165.1 hypothetical protein Csa_017531 [Cucumis sativus])

HSP 1 Score: 319 bits (818), Expect = 2.63e-107
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MDWGWGKFSGEPIFPENKQNPPSTFSDSIGSNKGSSQESSSSHGSSKRTRLLHANQNQTC 60
           MDWGWGKFSGEPIFPENKQNPPSTFSDSIGSNKGSSQESSSSHGSSKRTRLLHANQNQTC
Sbjct: 1   MDWGWGKFSGEPIFPENKQNPPSTFSDSIGSNKGSSQESSSSHGSSKRTRLLHANQNQTC 60

Query: 61  LVDGCDTDLTNCKDYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSC 120
           LVDGCDTDLTNCKDYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSC
Sbjct: 61  LVDGCDTDLTNCKDYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSC 120

Query: 121 RKRLDGHNRRRRKPQPESLFMSSSDFLSNCK 151
           RKRLDGHNRRRRKPQPESLFMSSSDFLSNCK
Sbjct: 121 RKRLDGHNRRRRKPQPESLFMSSSDFLSNCK 151

[Close]

BLAST of Cucsat.G15680 vs. NCBI nr
Match: XP_008450118.1 (PREDICTED: squamosa promoter-binding-like protein 13A [Cucumis melo])

HSP 1 Score: 308 bits (789), Expect = 6.68e-103
Identity = 146/151 (96.69%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 1   MDWGWGKFSGEPIFPENKQNPPSTFSDSIGSNKGSSQESSSSHGSSKRTRLLHANQNQTC 60
           MDW WGKFSGEP FPENKQNPPS+FSDSIGSNKGSSQESSSSHGSSKRTRLLH NQNQTC
Sbjct: 1   MDWVWGKFSGEPNFPENKQNPPSSFSDSIGSNKGSSQESSSSHGSSKRTRLLHGNQNQTC 60

Query: 61  LVDGCDTDLTNCKDYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSC 120
           LVDGCDTDLTNCKDYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSC
Sbjct: 61  LVDGCDTDLTNCKDYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSC 120

Query: 121 RKRLDGHNRRRRKPQPESLFMSSSDFLSNCK 151
           RKRLDGHNRRRRKPQPESLFMSS DFLSNCK
Sbjct: 121 RKRLDGHNRRRRKPQPESLFMSSRDFLSNCK 151

[Close]

BLAST of Cucsat.G15680 vs. NCBI nr
Match: XP_038877944.1 (squamosa promoter-binding-like protein 13A [Benincasa hispida])

HSP 1 Score: 310 bits (793), Expect = 4.83e-102
Identity = 145/151 (96.03%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 1   MDWGWGKFSGEPIFPENKQNPPSTFSDSIGSNKGSSQESSSSHGSSKRTRLLHANQNQTC 60
           MDWGWGKFSGEPIFPENKQNPPS+FSDSIGSNKGSSQESSSSHGSSKR RLLH +QNQTC
Sbjct: 104 MDWGWGKFSGEPIFPENKQNPPSSFSDSIGSNKGSSQESSSSHGSSKRIRLLHGSQNQTC 163

Query: 61  LVDGCDTDLTNCKDYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSC 120
           LVDGCDTDLTNCKDYHRRHRVCDSHSKTPVV+VRGEEKRFCQQCSRFHSLGEFDEVKRSC
Sbjct: 164 LVDGCDTDLTNCKDYHRRHRVCDSHSKTPVVLVRGEEKRFCQQCSRFHSLGEFDEVKRSC 223

Query: 121 RKRLDGHNRRRRKPQPESLFMSSSDFLSNCK 151
           RKRLDGHNRRRRKPQPESLFMSS+DFLSNCK
Sbjct: 224 RKRLDGHNRRRRKPQPESLFMSSTDFLSNCK 254

[Close]

BLAST of Cucsat.G15680 vs. NCBI nr
Match: KAA0042930.1 (squamosa promoter-binding-like protein 13A [Cucumis melo var. makuwa] >TYK05329.1 squamosa promoter-binding-like protein 13A [Cucumis melo var. makuwa])

HSP 1 Score: 305 bits (782), Expect = 7.72e-102
Identity = 145/151 (96.03%), Postives = 146/151 (96.69%), Query Frame = 0


Query: 1   MDWGWGKFSGEPIFPENKQNPPSTFSDSIGSNKGSSQESSSSHGSSKRTRLLHANQNQTC 60
           MDW WGKFSGEP FPENKQNPPS+FSDSIGSNK SSQESSSSHGSSKRTRLLH NQNQTC
Sbjct: 1   MDWVWGKFSGEPNFPENKQNPPSSFSDSIGSNKDSSQESSSSHGSSKRTRLLHGNQNQTC 60

Query: 61  LVDGCDTDLTNCKDYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSC 120
           LVDGCDTDLTNCKDYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSC
Sbjct: 61  LVDGCDTDLTNCKDYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSC 120

Query: 121 RKRLDGHNRRRRKPQPESLFMSSSDFLSNCK 151
           RKRLDGHNRRRRKPQPESLFMSS DFLSNCK
Sbjct: 121 RKRLDGHNRRRRKPQPESLFMSSRDFLSNCK 151

[Close]

BLAST of Cucsat.G15680 vs. NCBI nr
Match: KAG6588893.1 (Squamosa promoter-binding-like protein 13B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 275 bits (702), Expect = 1.55e-90
Identity = 137/159 (86.16%), Postives = 144/159 (90.57%), Query Frame = 0


Query: 1   MDWGWGKFSGEPI-FPENKQNPPSTFSDSIGSN-------KGSSQESSSSHGSSKRTRLL 60
           MDWGW KFSGE + F ENKQNP S FSDSIGSN       KGSSQESS+SHGSSKRTRLL
Sbjct: 1   MDWGWRKFSGERVTFQENKQNPTS-FSDSIGSNNEEEQILKGSSQESSTSHGSSKRTRLL 60

Query: 61  HANQNQTCLVDGCDTDLTNCKDYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHSLGE 120
           HA+QNQTCLVDGCD+DL+NCK+YHRRHRVCD HSKTPVVMVRGEEKRFCQQCSRFHSLGE
Sbjct: 61  HASQNQTCLVDGCDSDLSNCKEYHRRHRVCDLHSKTPVVMVRGEEKRFCQQCSRFHSLGE 120

Query: 121 FDEVKRSCRKRLDGHNRRRRKPQPESLFMSSSDFLSNCK 151
           FDEVKRSCRKRLDGHNRRRRKPQPESLF+SS DFLSNCK
Sbjct: 121 FDEVKRSCRKRLDGHNRRRRKPQPESLFISSRDFLSNCK 158

[Close]

BLAST of Cucsat.G15680 vs. ExPASy TrEMBL
Match: A0A0A0L895 (SBP-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G567830 PE=4 SV=1)

HSP 1 Score: 319 bits (818), Expect = 1.27e-107
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MDWGWGKFSGEPIFPENKQNPPSTFSDSIGSNKGSSQESSSSHGSSKRTRLLHANQNQTC 60
           MDWGWGKFSGEPIFPENKQNPPSTFSDSIGSNKGSSQESSSSHGSSKRTRLLHANQNQTC
Sbjct: 1   MDWGWGKFSGEPIFPENKQNPPSTFSDSIGSNKGSSQESSSSHGSSKRTRLLHANQNQTC 60

Query: 61  LVDGCDTDLTNCKDYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSC 120
           LVDGCDTDLTNCKDYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSC
Sbjct: 61  LVDGCDTDLTNCKDYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSC 120

Query: 121 RKRLDGHNRRRRKPQPESLFMSSSDFLSNCK 151
           RKRLDGHNRRRRKPQPESLFMSSSDFLSNCK
Sbjct: 121 RKRLDGHNRRRRKPQPESLFMSSSDFLSNCK 151

[Close]

BLAST of Cucsat.G15680 vs. ExPASy TrEMBL
Match: A0A1S3BNK6 (squamosa promoter-binding-like protein 13A OS=Cucumis melo OX=3656 GN=LOC103491800 PE=4 SV=1)

HSP 1 Score: 308 bits (789), Expect = 3.23e-103
Identity = 146/151 (96.69%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 1   MDWGWGKFSGEPIFPENKQNPPSTFSDSIGSNKGSSQESSSSHGSSKRTRLLHANQNQTC 60
           MDW WGKFSGEP FPENKQNPPS+FSDSIGSNKGSSQESSSSHGSSKRTRLLH NQNQTC
Sbjct: 1   MDWVWGKFSGEPNFPENKQNPPSSFSDSIGSNKGSSQESSSSHGSSKRTRLLHGNQNQTC 60

Query: 61  LVDGCDTDLTNCKDYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSC 120
           LVDGCDTDLTNCKDYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSC
Sbjct: 61  LVDGCDTDLTNCKDYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSC 120

Query: 121 RKRLDGHNRRRRKPQPESLFMSSSDFLSNCK 151
           RKRLDGHNRRRRKPQPESLFMSS DFLSNCK
Sbjct: 121 RKRLDGHNRRRRKPQPESLFMSSRDFLSNCK 151

[Close]

BLAST of Cucsat.G15680 vs. ExPASy TrEMBL
Match: A0A5D3C4M7 (Squamosa promoter-binding-like protein 13A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001560 PE=4 SV=1)

HSP 1 Score: 305 bits (782), Expect = 3.74e-102
Identity = 145/151 (96.03%), Postives = 146/151 (96.69%), Query Frame = 0


Query: 1   MDWGWGKFSGEPIFPENKQNPPSTFSDSIGSNKGSSQESSSSHGSSKRTRLLHANQNQTC 60
           MDW WGKFSGEP FPENKQNPPS+FSDSIGSNK SSQESSSSHGSSKRTRLLH NQNQTC
Sbjct: 1   MDWVWGKFSGEPNFPENKQNPPSSFSDSIGSNKDSSQESSSSHGSSKRTRLLHGNQNQTC 60

Query: 61  LVDGCDTDLTNCKDYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSC 120
           LVDGCDTDLTNCKDYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSC
Sbjct: 61  LVDGCDTDLTNCKDYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSC 120

Query: 121 RKRLDGHNRRRRKPQPESLFMSSSDFLSNCK 151
           RKRLDGHNRRRRKPQPESLFMSS DFLSNCK
Sbjct: 121 RKRLDGHNRRRRKPQPESLFMSSRDFLSNCK 151

[Close]

BLAST of Cucsat.G15680 vs. ExPASy TrEMBL
Match: A0A6J1EL17 (squamosa promoter-binding-like protein 13A OS=Cucurbita moschata OX=3662 GN=LOC111435296 PE=4 SV=1)

HSP 1 Score: 275 bits (703), Expect = 3.86e-90
Identity = 137/158 (86.71%), Postives = 144/158 (91.14%), Query Frame = 0


Query: 1   MDWGWGKFSGEPI-FPENKQNPPSTFSDSIGSN------KGSSQESSSSHGSSKRTRLLH 60
           MDWGW KFSGE + F ENKQNP S FSDSIGSN      KGSSQESS+SHGSSKRTRLLH
Sbjct: 1   MDWGWRKFSGERVTFQENKQNPTS-FSDSIGSNNEEQILKGSSQESSTSHGSSKRTRLLH 60

Query: 61  ANQNQTCLVDGCDTDLTNCKDYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHSLGEF 120
           A+QNQTCLVDGCD+DL+NCK+YHRRHRVCD HSKTPVVMVRGEEKRFCQQCSRFHSLGEF
Sbjct: 61  ASQNQTCLVDGCDSDLSNCKEYHRRHRVCDLHSKTPVVMVRGEEKRFCQQCSRFHSLGEF 120

Query: 121 DEVKRSCRKRLDGHNRRRRKPQPESLFMSSSDFLSNCK 151
           DEVKRSCRKRLDGHNRRRRKPQPESLF+SS DFLSNCK
Sbjct: 121 DEVKRSCRKRLDGHNRRRRKPQPESLFISSRDFLSNCK 157

[Close]

BLAST of Cucsat.G15680 vs. ExPASy TrEMBL
Match: A0A6J1JR21 (squamosa promoter-binding-like protein 13A OS=Cucurbita maxima OX=3661 GN=LOC111486693 PE=4 SV=1)

HSP 1 Score: 270 bits (690), Expect = 3.72e-88
Identity = 135/159 (84.91%), Postives = 142/159 (89.31%), Query Frame = 0


Query: 1   MDWGWGKFSGEPI-FPENKQNPPSTFSDSIGSN-------KGSSQESSSSHGSSKRTRLL 60
           MDWGW K SGE + F ENKQNP S FSDSIGSN       KGSSQES +SHGSSKRTRLL
Sbjct: 1   MDWGWRKISGERVTFQENKQNPTS-FSDSIGSNNEEEQILKGSSQESYTSHGSSKRTRLL 60

Query: 61  HANQNQTCLVDGCDTDLTNCKDYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHSLGE 120
           HA+QNQTCLVDGCD+DL+NCK+YHRRHRVCD HSKTPVVMVRGEEKRFCQQCSRFHSLGE
Sbjct: 61  HASQNQTCLVDGCDSDLSNCKEYHRRHRVCDLHSKTPVVMVRGEEKRFCQQCSRFHSLGE 120

Query: 121 FDEVKRSCRKRLDGHNRRRRKPQPESLFMSSSDFLSNCK 151
           FDEVKRSCRKRLDGHNRRRRKPQPESLF+SS DFLSNCK
Sbjct: 121 FDEVKRSCRKRLDGHNRRRRKPQPESLFISSRDFLSNCK 158

The following BLAST results are available for this feature:

BLAST of Cucsat.G15680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B9DI20	3.6e-34	56.74	Squamosa promoter-binding-like protein 13A OS=Arabidopsis thaliana OX=3702 GN=SP...	[more]
P0DI11	3.6e-34	56.74	Squamosa promoter-binding-like protein 13B OS=Arabidopsis thaliana OX=3702 GN=SP...	[more]
Q0J0K1	1.1e-32	70.21	Squamosa promoter-binding-like protein 18 OS=Oryza sativa subsp. japonica OX=399...	[more]
Q49I55	3.3e-32	58.47	Teosinte glume architecture 1 OS=Zea mays OX=4577 GN=TGA1 PE=1 SV=1	[more]
Q49I57	4.3e-32	57.98	Teosinte glume architecture 1 OS=Zea mays OX=4577 GN=TGA1 PE=3 SV=1	[more]

BLAST of Cucsat.G15680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148013.1	2.63e-107	100.00	squamosa promoter-binding-like protein 13A [Cucumis sativus] >KGN58165.1 hypothe...	[more]
XP_008450118.1	6.68e-103	96.69	PREDICTED: squamosa promoter-binding-like protein 13A [Cucumis melo]	[more]
XP_038877944.1	4.83e-102	96.03	squamosa promoter-binding-like protein 13A [Benincasa hispida]	[more]
KAA0042930.1	7.72e-102	96.03	squamosa promoter-binding-like protein 13A [Cucumis melo var. makuwa] >TYK05329....	[more]
KAG6588893.1	1.55e-90	86.16	Squamosa promoter-binding-like protein 13B, partial [Cucurbita argyrosperma subs...	[more]

BLAST of Cucsat.G15680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L895	1.27e-107	100.00	SBP-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G567830 PE...	[more]
A0A1S3BNK6	3.23e-103	96.69	squamosa promoter-binding-like protein 13A OS=Cucumis melo OX=3656 GN=LOC1034918...	[more]
A0A5D3C4M7	3.74e-102	96.03	Squamosa promoter-binding-like protein 13A OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A6J1EL17	3.86e-90	86.71	squamosa promoter-binding-like protein 13A OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1JR21	3.72e-88	84.91	squamosa promoter-binding-like protein 13A OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036893	SBP domain superfamily	GENE3D	4.10.1100.10		coord: 52..121 e-value: 2.5E-31 score: 109.6
IPR036893	SBP domain superfamily	SUPERFAMILY	103612	SBT domain	coord: 59..139
IPR004333	SBP domain	PFAM	PF03110	SBP	coord: 60..133 e-value: 2.1E-30 score: 104.8
IPR004333	SBP domain	PROSITE	PS51141	ZF_SBP	coord: 57..134 score: 31.496038
None	No IPR available	PIRSR	PIRSR037575-1	PIRSR037575-1	coord: 54..133 e-value: 3.2E-35 score: 118.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 305..344
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49
None	No IPR available	PANTHER	PTHR31251:SF93	TRANSCRIPTION FACTOR SBP FAMILY-RELATED	coord: 33..344
IPR044817	Squamosa promoter-binding-like protein	PANTHER	PTHR31251	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	coord: 33..344

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G15680.T1	Cucsat.G15680.T1	mRNA
Cucsat.G15680.T3	Cucsat.G15680.T3	mRNA
Cucsat.G15680.T4	Cucsat.G15680.T4	mRNA
Cucsat.G15680.T2	Cucsat.G15680.T2	mRNA
Cucsat.G15680.T5	Cucsat.G15680.T5	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding