Cucsat.G12824 (gene) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.GGAATTAGGGTTTAGTATAAAGAGTGGAAACTCCCACTTCATTTTGCTGCACGCCCCATTTTACCTATCGGAGCATTGGTCAGGCAAAACCCTAACGCAAATCAGGTTTTTCGATTTCTCTCAACGATTACGTTTGTTTCTTTGAAATTGTTTGTGTTTCCGATGTAATACTATGCGTATGTATGATTTTACTCAAGCTAGACTCTCTTCTGAGATCTCTTTTTTCGTCTATTTGTATCGTTGTTGCAGTGCCAGAAGAAGACGATGGCGGCGGTTCCAGGACAACTGATTTGGGAGATTGTGAAGAGGAACAACTCTTTTTTGGTGAAGGAGTTTGGAAGGGGAACAGCTGGTGTTCAGTTCAGCAAAGAGGCCAACAATTTATACAATCTGAACTCCTACAAGCATTCTGGTTAGTCATCTTAAATATTCTGATTAACGAGGCGTTCTTTTCATTTTAATTGCAATGCTAGTGGATTAAGTTTGGAAGATTTCGTTTGAACGTCTATACAACTTAGAGACGGGATCGTTAGTATATTATGTCGTTGTTTGAAGTTTGTGTATTGTTTAAGTAGAGTGTAGATGAAATTGAAATATTAGAGTGTTTGTTTGCTTTGATTCTATGAAGTTTTTCAAATGACCAAACCGCTGCTATGTTATTGTTTGAATTCCTGATGTTCTGCTCAAGTGGAGGTTATCTAGATTAGATGTGTGAGGGGCCAGCGAACTGATATATAGTTGTATACGATGTTGTAAATCGTTTGAAACTTCGTTTGTGCAGCATCTGGGAGGGTCGTAGAATAGAGATTGCATGGTCATTGTGCTTGTCCAATTAATGTTTATGCTATCGGTTCTTTTATTCTTAGATTAGATGTGTTCAAGAAATTATTTAGTTATTGGGTTACATGTTCGACAATTGATTCTGCGGTTTTCTTGAATACTTCCAACCGTTGCTAATCTCTTTGTACTAGAAAACATATTTGAGTATTTAATAATTTTTTGTCCTTGTTGAACAGTTCGGTTTATTGTCTAATATCTATTCGAATTTCATTGTTTTAGAACTTTATTAATAGTGGTGAGAGGAGTTTAAGGGGATTTTTTCTTTTCTTCATTATTTTTATTGTATGTTTTGGATTGAAGATAATATTGCCAATAGTCGGTGCAGTTTATGCTTAGGGTTCATTAAGATTCTTGTGTTTTAGGTTTGGCCAACAAGAAGACTGTCACAATTCAACCTGGAGGCAAAGATCAATCCATTTTGCTTGCAACAACCAAGAGCAAGAAACAGAACAAACCTTCTTCATCGCTTCATAAATCTTTGATGAAGAAAGAGTTCCGTCGGATGGCAAAAGCTGTAACAAACCAGGTATAAACAGCAGACCTTAATTATCTGTTGAGTATGACTTGTTCCTAATTAATACCATGGAAATAGTTGCATTAACTCACTCACCACACGAATGATATCAGGTGGCAGATAACTACTACAGGCCAGATCTGAAGAAGGCTGCCTTGGCAAGATTGAGTGCTGTAAACAGGAGCCTGAAGGTTGCCAAGTCTGGTGTTAAGAAGAGGAACAGGCAAGCTTTGAAATCAAAGAAGTGAGATTTAGGAGAATGATAAATGAGATTTTGCGTTTGCCATTGTGTTTTATGTTGGGATGTCAACCTTTTTAGTTCAGTTTGGAATCTGAAGAATAGTCTTGCTATAGATGTTTTTTTTTGCTGTGTTTTGCATTATTATTATATGATTGTTTTCTTGATGTGAAGAACTTTTGGAAGGCAATCTTATGACTTTGTTTTGGTATTGTGTTATTTTAGTTTGTAGTTGAAAATTACTAAGATATTTCATGATGCTTTGCGAAGGCTACTTAATCTAGAAAATGAATAATAGCAACCTTACCTTTTGGTGATTTATGTTAGATCTTCCCAATCATCCCGTGTATGATGCGTTGATTTCATTTTCCATTTAAATCC ATGGCGGCGGTTCCAGGACAACTGATTTGGGAGATTGTGAAGAGGAACAACTCTTTTTTGGTGAAGGAGTTTGGAAGGGGAACAGCTGGTGTTCAGTTCAGCAAAGAGGCCAACAATTTATACAATCTGAACTCCTACAAGCATTCTGGTTTGGCCAACAAGAAGACTGTCACAATTCAACCTGGAGGCAAAGATCAATCCATTTTGCTTGCAACAACCAAGAGCAAGAAACAGAACAAACCTTCTTCATCGCTTCATAAATCTTTGATGAAGAAAGAGTTCCGTCGGATGGCAAAAGCTGTAACAAACCAGGTGGCAGATAACTACTACAGGCCAGATCTGAAGAAGGCTGCCTTGGCAAGATTGAGTGCTGTAAACAGGAGCCTGAAGGTTGCCAAGTCTGGTGTTAAGAAGAGGAACAGGCAAGCTTTGAAATCAAAGAAGTGA MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQPGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALARLSAVNRSLKVAKSGVKKRNRQALKSKK Homology
BLAST of Cucsat.G12824 vs. ExPASy Swiss-Prot
Match: Q9M0E2 (60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1) HSP 1 Score: 216.5 bits (550), Expect = 2.1e-55 Identity = 109/143 (76.22%), Postives = 126/143 (88.11%), Query Frame = 0
BLAST of Cucsat.G12824 vs. ExPASy Swiss-Prot
Match: O82204 (60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1) HSP 1 Score: 212.2 bits (539), Expect = 3.9e-54 Identity = 108/143 (75.52%), Postives = 126/143 (88.11%), Query Frame = 0
BLAST of Cucsat.G12824 vs. ExPASy Swiss-Prot
Match: Q962T2 (60S ribosomal protein L28 OS=Spodoptera frugiperda OX=7108 GN=RpL28 PE=2 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 1.7e-12 Identity = 48/127 (37.80%), Postives = 68/127 (53.54%), Query Frame = 0
BLAST of Cucsat.G12824 vs. ExPASy Swiss-Prot
Match: P46779 (60S ribosomal protein L28 OS=Homo sapiens OX=9606 GN=RPL28 PE=1 SV=3) HSP 1 Score: 69.7 bits (169), Expect = 3.1e-11 Identity = 44/139 (31.65%), Postives = 78/139 (56.12%), Query Frame = 0
BLAST of Cucsat.G12824 vs. ExPASy Swiss-Prot
Match: P41105 (60S ribosomal protein L28 OS=Mus musculus OX=10090 GN=Rpl28 PE=1 SV=2) HSP 1 Score: 69.3 bits (168), Expect = 4.1e-11 Identity = 44/139 (31.65%), Postives = 78/139 (56.12%), Query Frame = 0
BLAST of Cucsat.G12824 vs. NCBI nr
Match: XP_004146830.1 (60S ribosomal protein L28-2 [Cucumis sativus] >KGN59836.1 hypothetical protein Csa_000918 [Cucumis sativus]) HSP 1 Score: 277 bits (709), Expect = 1.11e-93 Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0
BLAST of Cucsat.G12824 vs. NCBI nr
Match: XP_008447584.1 (PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >XP_008447585.1 PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >XP_008447586.1 PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >KAA0061117.1 60S ribosomal protein L28-2-like [Cucumis melo var. makuwa] >TYK03788.1 60S ribosomal protein L28-2-like [Cucumis melo var. makuwa]) HSP 1 Score: 273 bits (698), Expect = 5.26e-92 Identity = 146/148 (98.65%), Postives = 146/148 (98.65%), Query Frame = 0
BLAST of Cucsat.G12824 vs. NCBI nr
Match: XP_038886678.1 (60S ribosomal protein L28-2-like [Benincasa hispida]) HSP 1 Score: 271 bits (694), Expect = 2.29e-91 Identity = 144/146 (98.63%), Postives = 145/146 (99.32%), Query Frame = 0
BLAST of Cucsat.G12824 vs. NCBI nr
Match: XP_022949503.1 (60S ribosomal protein L28-2-like [Cucurbita moschata] >XP_022998347.1 60S ribosomal protein L28-2-like [Cucurbita maxima] >XP_023523885.1 60S ribosomal protein L28-2-like [Cucurbita pepo subsp. pepo] >KAG7036445.1 60S ribosomal protein L28-2 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 265 bits (677), Expect = 8.97e-89 Identity = 140/146 (95.89%), Postives = 142/146 (97.26%), Query Frame = 0
BLAST of Cucsat.G12824 vs. NCBI nr
Match: XP_022148100.1 (60S ribosomal protein L28-2-like [Momordica charantia]) HSP 1 Score: 264 bits (674), Expect = 2.24e-88 Identity = 140/144 (97.22%), Postives = 141/144 (97.92%), Query Frame = 0
BLAST of Cucsat.G12824 vs. ExPASy TrEMBL
Match: A0A0A0LIG3 (Ribosomal_L28e domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G849920 PE=3 SV=1) HSP 1 Score: 277 bits (709), Expect = 5.35e-94 Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0
BLAST of Cucsat.G12824 vs. ExPASy TrEMBL
Match: A0A1S3BIE3 (60S ribosomal protein L28-2-like OS=Cucumis melo OX=3656 GN=LOC103490001 PE=3 SV=1) HSP 1 Score: 273 bits (698), Expect = 2.55e-92 Identity = 146/148 (98.65%), Postives = 146/148 (98.65%), Query Frame = 0
BLAST of Cucsat.G12824 vs. ExPASy TrEMBL
Match: A0A5D3BXS0 (60S ribosomal protein L28-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001760 PE=3 SV=1) HSP 1 Score: 273 bits (698), Expect = 2.55e-92 Identity = 146/148 (98.65%), Postives = 146/148 (98.65%), Query Frame = 0
BLAST of Cucsat.G12824 vs. ExPASy TrEMBL
Match: A0A6J1K7P5 (60S ribosomal protein L28-2-like OS=Cucurbita maxima OX=3661 GN=LOC111493014 PE=3 SV=1) HSP 1 Score: 265 bits (677), Expect = 4.34e-89 Identity = 140/146 (95.89%), Postives = 142/146 (97.26%), Query Frame = 0
BLAST of Cucsat.G12824 vs. ExPASy TrEMBL
Match: A0A6J1GC99 (60S ribosomal protein L28-2-like OS=Cucurbita moschata OX=3662 GN=LOC111452830 PE=3 SV=1) HSP 1 Score: 265 bits (677), Expect = 4.34e-89 Identity = 140/146 (95.89%), Postives = 142/146 (97.26%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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