Cucsat.G15385.T5 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G15385.T5
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description50S ribosomal protein L9, chloroplastic
Locationctg2009: 2799071 .. 2801400 (-)
RNA-Seq ExpressionCucsat.G15385.T5
SyntenyCucsat.G15385.T5
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAATACTAAATTAAATAATCAAAACCCTAAATCCGTTGCCTCCTCCATCAACCACGATCTCCTCATCCTCCCTACCAAATCATTTTCCGACGCTGTCCACCGCCACGGACGGTCATTCCATACCCCACCGCCGGTAATTCCACCTTTTTTTTTTTTTTTCTACTCCAGTTTTGCTCTTTCTTCTTCCTCACCCACCTGGTTTTGTGTTCATGCACGTCTTAAAAGCTTTTGTGGCTCTAATTTTTCCATTTCCTTATACAGACTTGTCATAAGATCCGAATGGCTTGTATACAGTATTGTAGAAATGCACTCCGGAATATTATTAAAGATACCAAGCTCCATCCTTCTGATCAAATGATGCAGCCATTGTTATTCTCGGGTCAGGGAGTTAGACATAGGAAGTTGGAAGTTATTCTCACAACAGTGAGTATGTGACTTCACTTTTTTTATTCTTTTAGTTTTGATGTCTAACTGTACATTTTTATGGACAGTGAATTGAATATTTCTTACTTTGTTGTTTAAAAAGAGCATTGAAAAGCTTGGGAAAGCTGGAGAGACAGTTAAGGTTGCCCCTGGATACTTCCGGAACCATCTTATGCCCAAGATACTGGCTGTTCCAAATATTGAAAAGTATGCTTATCTGATTAAGGAGCAGCGCAGGGTATGTCTCTTCAATTTGGATCACTCCAGTTACTTTTGATTGTTTTTACATACGTGTTCTGGTGTTCATTGATTAGTTTTAGTTTGTTGTTTCTTCCCAATTGCAAAGAGAGGGGTTGGGGAGAAGACAAATTAATTTAGATTACAGTAAATCCTGCTTCTTTTTACTTGCTAATGGTTGATGTACTTTTTTTTGGGTTTGATTTAAAATTTTTAGCAACCCACATGACAACACATTTGAGTGGTATGAAAATTCATAATCTTTAGTTTAACCAAAGTGTGGGGACTTGGTGGAGTATAGGCTGATTGATTTTGCTGTCATAGCTTTGTTTTCTCATGTTGGGTGTATCTCCATAGTAGAGGACTCAGATGGGTTTCACACTTTTCTATCATTTCAATTTTTTTGAATTTAGATTTACCAACCGGTTGAGGAAGAAGTCGTTAAGGTTGTGACACTGACGAAGGAGGATAAGATGAAAGAATATGAAAAGGCAGCAAGACGTCTGGATAGTAAACAGCTGGTTTGTAACTTCACTTTTTATCCAATTTGTTTGAAGTTGTATACTTAGGTTTGGAACATTTTGGATACCTTGACATTCCTTGATTCATTCAATATTTTATTAGCTATAATTGATGCATGACGTTTTTTTAGGTGTTGAGGAGGTTAATTGACAAGGAAAAATTCCGTACCCGTGCTGCAAAAGATGAGCCCTTAGCTCTGCAATCTTCTGTGACAGTAGACGACATTGTCGCTGAGGTAGGCATTGAAAGATACTTTTCTACTTGTTGAAATGAGAATTTAAATGGTTAGTTATTTATTTATTCCTCAGGTTAGTTGATCTTTTTGAGGTGTGAAACCTTAGAGTATCATAATGTGAAGTTTGAGAATAGGACGGATGTTTTGTGCAAAGTGTAAGCTAGGATTTCAATTGAACTCTTCTCTTCCTTTTTTTTCCTTTGGGGGGTGGGAGGGTGGTTGGCACCTGGTTGAATAAACCGGAGTCTTGTTATCGGCGGTCTTGGGAGTTTGGGGTTAACCAAGAAGTTGTGGGTCCAACGACTGAAAAACATCACTTTCATTTTTTATTAACTTCTTTCATTGTTAACCCACGGCCCAAACTTAACAACTCCCCACGTCTTTTACCAATAGATATAGACCTATTTTTTCTTTTTTAATGTCGATCTAAGCATTTCATTTTTCTTTTCCGGGTCAGGTGGCACGCCAATTTTCTGTTCAAATTGCACCCGAAAATTTGAATTTAGCATCCCCCTTGTCAGCATGTGGTGAATATGAGGTACCACTCCGCTTTCCAAAGTCGATCCCTTTGCCTGAAGGAAAGGTCTACTGGACTCTCAAAGTGAAAGTCCGTAGTAAATAAAAAGTGGTAAACGCTATCTCTCACGTTATGGTGCCTCTGTCTTGGATTTCTTTAGATCGCTAGGCCTTTCAGACTTTTAGTTATTGAGTTGGCTGTTTGCTGGTTCCTCAATGATTGAATTAAAGCTATTTGCTTAACAATATAATGTATTCACACTCTTTGACAACATCAACGTGATAATATATGCGTTGTTGAATTAATTTTCTCTTCTTCTCATTGCATACACTAAGGAGTAAATCGAATTGATCTTCTGCATTTGAATTTATCGTCTCATTCTTTTTGTGCAGAA

Coding sequence (CDS)

ATGCCCAAGATACTGGCTGTTCCAAATATTGAAAAGTATGCTTATCTGATTAAGGAGCAGCGCAGGATTTACCAACCGGTTGAGGAAGAAGTCGTTAAGGTTGTGACACTGACGAAGGAGGATAAGATGAAAGAATATGAAAAGGCAGCAAGACGTCTGGATAGTAAACAGCTGGTGTTGAGGAGGTTAATTGACAAGGAAAAATTCCGTACCCGTGCTGCAAAAGATGAGCCCTTAGCTCTGCAATCTTCTGTGACAGTAGACGACATTGTCGCTGAGGTGGCACGCCAATTTTCTGTTCAAATTGCACCCGAAAATTTGAATTTAGCATCCCCCTTGTCAGCATGTGGTGAATATGAGGTACCACTCCGCTTTCCAAAGTCGATCCCTTTGCCTGAAGGAAAGGTCTACTGGACTCTCAAAGTGAAAGTCCGTAGTAAATAA

Protein sequence

MPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNLASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK
Homology
[Close]
BLAST of Cucsat.G15385.T5 vs. NCBI nr
Match: XP_004146229.1 (uncharacterized protein LOC101217377 [Cucumis sativus] >KAE8650546.1 hypothetical protein Csa_009654 [Cucumis sativus])

HSP 1 Score: 278 bits (710), Expect = 8.16e-93
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0 

Query: 1   MPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAARRLDSKQLVL 60
           MPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAARRLDSKQLVL
Sbjct: 72  MPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAARRLDSKQLVL 131

Query: 61  RRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNLASPLSACGEYE 120
           RRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNLASPLSACGEYE
Sbjct: 132 RRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNLASPLSACGEYE 191

Query: 121 VPLRFPKSIPLPEGKVYWTLKVKVRSK 147
           VPLRFPKSIPLPEGKVYWTLKVKVRSK
Sbjct: 192 VPLRFPKSIPLPEGKVYWTLKVKVRSK 218

[Close]
BLAST of Cucsat.G15385.T5 vs. NCBI nr
Match: TYK11291.1 (50S ribosomal protein L9 [Cucumis melo var. makuwa])

HSP 1 Score: 269 bits (688), Expect = 7.83e-90
Identity = 142/147 (96.60%), Postives = 144/147 (97.96%), Query Frame = 0 

Query: 1   MPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAARRLDSKQLVL 60
           MPKILAVPNIEKYA+LIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAA+RLD KQLVL
Sbjct: 47  MPKILAVPNIEKYAHLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAAKRLDCKQLVL 106

Query: 61  RRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNLASPLSACGEYE 120
           RRLIDKEKFRTRA KDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL SPLSACGEYE
Sbjct: 107 RRLIDKEKFRTRATKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNLPSPLSACGEYE 166

Query: 121 VPLRFPKSIPLPEGKVYWTLKVKVRSK 147
           VPLRFPKSIPLPEGKVYWTLKVKVRSK
Sbjct: 167 VPLRFPKSIPLPEGKVYWTLKVKVRSK 193

[Close]
BLAST of Cucsat.G15385.T5 vs. NCBI nr
Match: KAA0050521.1 (50S ribosomal protein L9 [Cucumis melo var. makuwa])

HSP 1 Score: 266 bits (680), Expect = 1.30e-88
Identity = 141/147 (95.92%), Postives = 143/147 (97.28%), Query Frame = 0 

Query: 1   MPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAARRLDSKQLVL 60
           MPKILAVPNIEKYA+LIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAA+RLD KQLVL
Sbjct: 47  MPKILAVPNIEKYAHLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAAKRLDCKQLVL 106

Query: 61  RRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNLASPLSACGEYE 120
           RRLIDKEKFRTRA KDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL SPLSACGEYE
Sbjct: 107 RRLIDKEKFRTRATKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNLPSPLSACGEYE 166

Query: 121 VPLRFPKSIPLPEGKVYWTLKVKVRSK 147
           V LRFPKSIPLPEGKVYWTLKVKVRSK
Sbjct: 167 VALRFPKSIPLPEGKVYWTLKVKVRSK 193

[Close]
BLAST of Cucsat.G15385.T5 vs. NCBI nr
Match: XP_008455982.1 (PREDICTED: 50S ribosomal protein L9 [Cucumis melo])

HSP 1 Score: 266 bits (680), Expect = 3.02e-88
Identity = 141/147 (95.92%), Postives = 143/147 (97.28%), Query Frame = 0 

Query: 1   MPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAARRLDSKQLVL 60
           MPKILAVPNIEKYA+LIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAA+RLD KQLVL
Sbjct: 72  MPKILAVPNIEKYAHLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAAKRLDCKQLVL 131

Query: 61  RRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNLASPLSACGEYE 120
           RRLIDKEKFRTRA KDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL SPLSACGEYE
Sbjct: 132 RRLIDKEKFRTRATKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNLPSPLSACGEYE 191

Query: 121 VPLRFPKSIPLPEGKVYWTLKVKVRSK 147
           V LRFPKSIPLPEGKVYWTLKVKVRSK
Sbjct: 192 VALRFPKSIPLPEGKVYWTLKVKVRSK 218

[Close]
BLAST of Cucsat.G15385.T5 vs. NCBI nr
Match: XP_038895552.1 (50S ribosomal protein L9 [Benincasa hispida])

HSP 1 Score: 264 bits (675), Expect = 1.74e-87
Identity = 136/147 (92.52%), Postives = 143/147 (97.28%), Query Frame = 0 

Query: 1   MPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAARRLDSKQLVL 60
           MPK+LAVPNI+KYAYLIKEQRRIYQPV+EEVVKVVT+TKEDKMKEYEKAA+RLDS QLVL
Sbjct: 72  MPKLLAVPNIDKYAYLIKEQRRIYQPVDEEVVKVVTVTKEDKMKEYEKAAKRLDSTQLVL 131

Query: 61  RRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNLASPLSACGEYE 120
           RRLIDKEKFRTRA KDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL SPLS CGEYE
Sbjct: 132 RRLIDKEKFRTRATKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNLPSPLSTCGEYE 191

Query: 121 VPLRFPKSIPLPEGKVYWTLKVKVRSK 147
           +PLRFPKSIPLPEGK+YWTLKVKVRSK
Sbjct: 192 IPLRFPKSIPLPEGKIYWTLKVKVRSK 218

[Close]
BLAST of Cucsat.G15385.T5 vs. ExPASy TrEMBL
Match: A0A0A0LAH8 (50S ribosomal protein L9, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_3G238230 PE=3 SV=1)

HSP 1 Score: 278 bits (710), Expect = 4.09e-92
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0 

Query: 1   MPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAARRLDSKQLVL 60
           MPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAARRLDSKQLVL
Sbjct: 142 MPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAARRLDSKQLVL 201

Query: 61  RRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNLASPLSACGEYE 120
           RRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNLASPLSACGEYE
Sbjct: 202 RRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNLASPLSACGEYE 261

Query: 121 VPLRFPKSIPLPEGKVYWTLKVKVRSK 147
           VPLRFPKSIPLPEGKVYWTLKVKVRSK
Sbjct: 262 VPLRFPKSIPLPEGKVYWTLKVKVRSK 288

[Close]
BLAST of Cucsat.G15385.T5 vs. ExPASy TrEMBL
Match: A0A5D3CHL1 (50S ribosomal protein L9, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001510 PE=3 SV=1)

HSP 1 Score: 269 bits (688), Expect = 3.79e-90
Identity = 142/147 (96.60%), Postives = 144/147 (97.96%), Query Frame = 0 

Query: 1   MPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAARRLDSKQLVL 60
           MPKILAVPNIEKYA+LIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAA+RLD KQLVL
Sbjct: 47  MPKILAVPNIEKYAHLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAAKRLDCKQLVL 106

Query: 61  RRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNLASPLSACGEYE 120
           RRLIDKEKFRTRA KDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL SPLSACGEYE
Sbjct: 107 RRLIDKEKFRTRATKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNLPSPLSACGEYE 166

Query: 121 VPLRFPKSIPLPEGKVYWTLKVKVRSK 147
           VPLRFPKSIPLPEGKVYWTLKVKVRSK
Sbjct: 167 VPLRFPKSIPLPEGKVYWTLKVKVRSK 193

[Close]
BLAST of Cucsat.G15385.T5 vs. ExPASy TrEMBL
Match: A0A5A7UAF4 (50S ribosomal protein L9, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001650 PE=3 SV=1)

HSP 1 Score: 266 bits (680), Expect = 6.28e-89
Identity = 141/147 (95.92%), Postives = 143/147 (97.28%), Query Frame = 0 

Query: 1   MPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAARRLDSKQLVL 60
           MPKILAVPNIEKYA+LIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAA+RLD KQLVL
Sbjct: 47  MPKILAVPNIEKYAHLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAAKRLDCKQLVL 106

Query: 61  RRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNLASPLSACGEYE 120
           RRLIDKEKFRTRA KDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL SPLSACGEYE
Sbjct: 107 RRLIDKEKFRTRATKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNLPSPLSACGEYE 166

Query: 121 VPLRFPKSIPLPEGKVYWTLKVKVRSK 147
           V LRFPKSIPLPEGKVYWTLKVKVRSK
Sbjct: 167 VALRFPKSIPLPEGKVYWTLKVKVRSK 193

[Close]
BLAST of Cucsat.G15385.T5 vs. ExPASy TrEMBL
Match: A0A1S3C248 (50S ribosomal protein L9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103496047 PE=3 SV=1)

HSP 1 Score: 266 bits (680), Expect = 1.46e-88
Identity = 141/147 (95.92%), Postives = 143/147 (97.28%), Query Frame = 0 

Query: 1   MPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAARRLDSKQLVL 60
           MPKILAVPNIEKYA+LIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAA+RLD KQLVL
Sbjct: 72  MPKILAVPNIEKYAHLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAAKRLDCKQLVL 131

Query: 61  RRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNLASPLSACGEYE 120
           RRLIDKEKFRTRA KDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL SPLSACGEYE
Sbjct: 132 RRLIDKEKFRTRATKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNLPSPLSACGEYE 191

Query: 121 VPLRFPKSIPLPEGKVYWTLKVKVRSK 147
           V LRFPKSIPLPEGKVYWTLKVKVRSK
Sbjct: 192 VALRFPKSIPLPEGKVYWTLKVKVRSK 218

[Close]
BLAST of Cucsat.G15385.T5 vs. ExPASy TrEMBL
Match: A0A6J1HYV2 (50S ribosomal protein L9, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467481 PE=3 SV=1)

HSP 1 Score: 256 bits (653), Expect = 1.88e-84
Identity = 131/147 (89.12%), Postives = 140/147 (95.24%), Query Frame = 0 

Query: 1   MPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAARRLDSKQLVL 60
           MPK+LAVPNI+KYAYLIKEQRRIYQPVEEEVVKVVT+TKEDKMKEYEKAA+RLDS QLVL
Sbjct: 72  MPKLLAVPNIDKYAYLIKEQRRIYQPVEEEVVKVVTVTKEDKMKEYEKAAKRLDSTQLVL 131

Query: 61  RRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNLASPLSACGEYE 120
           RRLIDKEKFRTRA KDEPLALQSSVTVDD+VAEVARQ S+QI PENL+L +PL  CGEYE
Sbjct: 132 RRLIDKEKFRTRATKDEPLALQSSVTVDDLVAEVARQLSIQITPENLHLPAPLPTCGEYE 191

Query: 121 VPLRFPKSIPLPEGKVYWTLKVKVRSK 147
           VPLRFPKSIPLPEGK+YWTLKVKVRSK
Sbjct: 192 VPLRFPKSIPLPEGKIYWTLKVKVRSK 218

The following BLAST results are available for this feature:
BLAST of Cucsat.G15385.T5 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G15385.T5 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004146229.18.16e-93100.00uncharacterized protein LOC101217377 [Cucumis sativus] >KAE8650546.1 hypothetica... [more]
TYK11291.17.83e-9096.6050S ribosomal protein L9 [Cucumis melo var. makuwa][more]
KAA0050521.11.30e-8895.9250S ribosomal protein L9 [Cucumis melo var. makuwa][more]
XP_008455982.13.02e-8895.92PREDICTED: 50S ribosomal protein L9 [Cucumis melo][more]
XP_038895552.11.74e-8792.5250S ribosomal protein L9 [Benincasa hispida][more]
BLAST of Cucsat.G15385.T5 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAH84.09e-92100.0050S ribosomal protein L9, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_3G2382... [more]
A0A5D3CHL13.79e-9096.6050S ribosomal protein L9, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7UAF46.28e-8995.9250S ribosomal protein L9, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A1S3C2481.46e-8895.9250S ribosomal protein L9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103496047 ... [more]
A0A6J1HYV21.88e-8489.1250S ribosomal protein L9, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036791Ribosomal protein L9, C-terminal domain superfamilyGENE3D3.10.430.100coord: 41..146
e-value: 4.0E-7
score: 32.0
IPR036791Ribosomal protein L9, C-terminal domain superfamilySUPERFAMILY55653Ribosomal protein L9 C-domaincoord: 43..144
IPR020069Ribosomal protein L9, C-terminalPFAMPF03948Ribosomal_L9_Ccoord: 76..128
e-value: 1.9E-5
score: 25.0
NoneNo IPR availablePANTHERPTHR21368:SF24BNAA02G10490D PROTEINcoord: 1..146
IPR000244Ribosomal protein L9PANTHERPTHR2136850S RIBOSOMAL PROTEIN L9coord: 1..146

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G15385Cucsat.G15385gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G15385.T5.E1Cucsat.G15385.T5.E1exon
Cucsat.G15385.T5.E2Cucsat.G15385.T5.E2exon
Cucsat.G15385.T5.E3Cucsat.G15385.T5.E3exon
Cucsat.G15385.T5.E4Cucsat.G15385.T5.E4exon
Cucsat.G15385.T5.E5Cucsat.G15385.T5.E5exon
Cucsat.G15385.T5.E6Cucsat.G15385.T5.E6exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G15385.T5.C4Cucsat.G15385.T5.C4CDS
Cucsat.G15385.T5.C3Cucsat.G15385.T5.C3CDS
Cucsat.G15385.T5.C2Cucsat.G15385.T5.C2CDS
Cucsat.G15385.T5.C1Cucsat.G15385.T5.C1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G15385.T5Cucsat.G15385.T5-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0019843 rRNA binding