Cp4.1LG05g05770 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG05g05770
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionserine/arginine-rich splicing factor SR34A-like
LocationCp4.1LG05: 3498066 .. 3502930 (-)
RNA-Seq ExpressionCp4.1LG05g05770
SyntenyCp4.1LG05g05770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAATCGCGTATTTGGAAATTACCTCCTTCAGTCTCGCGCCTGTGGCTGTGGCATGTTATCCTCTGCCACGACCTAACCCTAAACCCTTCGTCATCAATTCCGGTCGCTGCAGGAGGATCTCCAGCACGGAAGCCAAGCGCCAGTTCTTCTTTGAGTCCTTGCTGAGCCGCGGTTCCAGGTTTTGGTGCAGTCTAGTTCGTCACTTTCCCAGTCTTTGGTATGTTGTTTTCGTTAGTCGTTACTGCTTTTAATTACCGTATAATCAAACGACGCTCATATGCGTGCTGTGGAGGAATATGATTAGTCAGACTTGTCCAATCTTGGTGGGTAGAACGTTCGCAATCTTGGATTTGCTTTTTTCTCTTGTTGTGTTCTTCATCTGGACTAGGGTGCGGCATTAGTGGATAAGTTTTGTTGAATTTATGTTTGCGTTCTCTCGGCGTGTTAAATGGACGACACCTCGTGCTGAATTATTTCACACACTGAAGCAGCTGATTCGGTGGTTGAAATTTGATTTCTGCGTTCCTCCTAGTTTACTTCCATTGGGCTGTTGTTGTTGCTATTAATACAACACTGTAGTGGTTGGTGAACTTTAATCTAGATGCCTTTACTTAGACCTTTGGAACTGAGAAAATAGTCTACTGTGTTAGCACCTTTATTACGTTTTAAACTCGTTCCTCTTATTTCTGTAGATATGTTGATTCAAGATTGAATACACTTATCAATAACAGTATTAACCAACGTTTTGTTACCACCCAATATTAATAAATTGGCACGGAAGTCTGAATTTTTCTGTTCTTAATATCACTTCTGTGCTTTCCCTGTACTGAATTGGTGTTACAATTTTCTTCAATTTATGTCCTGTTAGTTGGGATTTATTTACGTGAAGTAAAAGGGACCCGGCTTGTTAAATTCTGTTTCCATTTTGTTAATTGATATAACATTATGGTATTTCTATTTTGTTTTTTATGTGGACTTCTCCCACTGACGACCTTAGATAATGATGTTGCCCCAAGAGTATTAACACTAATGTTTTATATGACCACGTTCTTAAATATGTTGATAAGAAAGGCAGTAAACTTTTGCACCATTCCTCTTTGGAATCGGATGCAACATAATTGAGGATTTCACTGATCATCTAAAGTTAATCCACAGAGGACATCCTGCATATTTTTTCAGGGTTGTTTTCTCAATGATGTTAAGAGAGATGAGTAAGGTAAAATTAATCATGTATGTCACTCTTGCCTCATCTCATGACACACATGCTTTCTTTATGATAGATGACAAGCGCTTGGACAAATATGAGCATTGCAATCATACATAGGGATATAGAAAGGGAATGGGAGAATCCTTGTGGAGTTATGGGTATTTTTTTTAAAATGGAGATGCTTGATCACTCTCAGAAAAGCTATGCACTGCTAAAATTCTGGAGAGGATGAGGAGATACAAAATTTATTTCAATATTATAATACCTTTGGAGCATCTTGGAGCGAATGAGCAATGGAATTGTGGAGCACGGCTCACATGGAGGATTGCTCTCTTGGTTTGCTTTGTTGTTTTTGGTTCTACCTTATTTTAAGAGTAAAGTTGTTGATACAGATGGCAATTGTTGTAGAAGATGGTTGTTCTATCCTTTTGATGATTCATTTAATAGATGTATGATGTTATGACATAACATGTGCAGGAATAATATTTCAAACACTCGGACTAATTTGTTTCCTTGAAGATGAGTAGTCGTTTTTCCCGCACGATATATGTTGGAAACTTGCCCTCGGACATAAGAGAGAATGAAATTGAAGATTTGTTCTACAAGGTATATATTTTTAATCTTAGCATTTTTTTTATCACGGTGTCTATGAGAAAATTGTTATTTTCTCTTTTCATATTTTTAATTTTGAATACTATTCTTAATTATTTTATTTTTATTAGTGGGATGTACATTACAATGGTGATTTACGGTCACTCAATCCTATTTTGATTTTTGGTTCAGAAAGAAAATCAATTAGATGTATTTTGTGGCTCATGCATATCTAAGGTTTAATTTTTGTGATATGGAGGCTACATGATTGATAGTTCCTTTGGCAGTATGGTCGAATTTTGGATATTGAATTGAAGATTCCGCCGCGCCCTCCATGTTATTGTTTTGTGGAGGTATTGCTTTTGATCTTTAGTTTGTATCTTCTTTTAGCTGCATTTGTCAAACTATTTTCATGATATTATGTGCTTTCTGTTGTTAGTTTGAGAATGTTAGGGATGCAGAAGATGCAATTCGAGGTCGTGATGGATATAATTTTGATGGTTGCCGCCTAAGGGTATCAACTAAGTCTTCCTTTTGCTTTACTTCCTGGTCCTACTTTTTTTTTAGTTTTTCTTATATTTTCAGTTCTTTAATAGGTTGAACTTGCACATGGTGGTAGAGGCCCTTCATCAAGTGATCATCGTAGCAATTATGGTGGCAGTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGGTGTGGGGGTATATATGAATGCTGCCTTTTAAGGAAGCATGATGCCGACAATTTCCCACGTGTAATATTTCATTAGATTCATATTAATTTCAATGGTCTAATGAATGTTTAATTTCCCTCACAGTTATTGTACGGGGACTCCCATCTTCTGCTTCTTGGCAGGATTTGAAGGTGCTAGAGTCTTTATTGTTTAATGAAAGATGAAGTGTTTCTTTTATTGGACCATGTTGTTGTCTTTACTGGTGTAATGCTTTCAGGATCATATGCGCAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCCCATGACAGCGAAGGTTTAATCCTTATCTTTGATATTGTAATAATAACTGCTATTGTTTTTTTTTTTTTCTCTCTTTACAAGTTTCAACTAACTTCAGTACCTGAAATTTCTTCGCATTGATTTGATAATTAGATAAATATTTACTATTTGAAGTAAATGTGTCCAGGGACATTTGGGACTGTTGATTATACAAACTATGACGACATGAAGTATGCTGTAAGTTTTTCTGTAAGCATGTTTCATCAGAAGTCCTGTATTATTTCAATTTGACTACTAATGTGTTTTTGTTATTTAGATTCGAAAACTTGACGATACAGAATTCAAAAATCCTTGGGCAAGAGCATACATTCGGGTACCCTAACATTTTTTCTCTTGCCATAGTTAATTATTTTCAATTAGCCTACTGTTGTGCTGTTTTCATTTACAGCCTAGCCTCTTTCAGTGAGCATTTTAAGAAACTGGATTTGGTTTTTTATGTCACTTGTGTTTGTGGATTACATTGGGTTGCAGGTGAAAAAGTACGAAGGCAGTCCCACTAGGGGTCGGAGCAGAAACAGAAGCAGAAGCCGTAGTAGGAGCCGGAGCCGGAGCCGAAGCCGAAGCCGAAGTGCGAGGCGAAATAGGAGGTGCCAGCTTTTTCTGTTTTACTGTTATCACTCTCATGGCCTCATTATTCTTTATAATGTTTTCTTGTACCATGCAGCAAATCAGCCGAACAATCTGTTTCTAGATCAGTTTCAAGATCAAGATCTCTATCCCCTGTTAAATCTTCAAGGTACCTGTGGCCTCTGTGTGTGTGTGTTTTTTCCGGAGTTTGGATTTTCTCAAGAAATTAAGAAATAATGTTTGACATACATTTTCTGCTAAATATGCAGACGACGTTCAAAATNTTTTTTCCGGAGTTTGGATTTTCTCAAGAGATTAAGAAATAATGTATGACATACATTTTCTGCTAAATATGCAGACGACGTTCAAAATCAAGATCTGGATCACCACGTGAGGTATGCAACGTCCAGTTTTAATGCTTCAAAAGCTGTAGACTTCATATTAATCTATTTATACTCATGGTATATAGAGCTATCTGATTGAATGATATGCGTCAATGGGTAGTGGTATTAAGAAAGAACAACCTTTGGATGAAGGTGTAGAATGAGCATGTTTGTCATATGGTGTAGGTCATTGTTAGTTTTGTTATTATTGGTGGCAGGGGTAGTTGCCAATGGGAAAGGTAGAACCCATGATGGCGTTTTGTTCCGAATGAATCTCAATATTAGCCTTGATATTATGAACCATGGGTATGTCACTCTAGTTCGAGCTTCTCGTGATGGTTCTAGATAACTAAATGTGATAATGTCATGGTACACTTCAGTTTTTTGGACACCCAAGTTACCAAAAACTTCGCCGTCATTTCGATCCTTAGATTAAAGCTCACTAGATAGTTTGAATTTAGTGAAAGTAATGGACATACGTGGGTGTAAGTATTTGTGGTTCATTATGCTGTGGAATGAGATCAGCCCTAGTCTCTTTCCTGATTTCAAAACAATGCCTTAAACTCAACTTAAAAATACTTGTAAAGTTTTTTTTAATTTAAGAATAGGAACCATAATGAAAGTAGGAATTAAATTGGTACCATGAGTCGAGTCAACTTAAGTATAGTTCAACTGATCAGTAGAATCTGTCTTTGTACTAAACTCAAACGATGATTTGATTAGATTAGGGCCATACAACTGCACTAACAGAAGCTGAAATCTCTTTTTCAGGCACGAGAAGGTAGCGGATGATAATATGAAGCTATAATGATAGGAACGGTTGTTATAATATCGACGAATGCAACATTCGGTTGGATTTCATGTTAGTTTAGGACCTATTATATGCTTGACTGGTTATGAGGAGTTGAGTTATCTGAAGAATATGGCTTGAGTTGTATGGATATCTTTCAAATCCTTCTCATGTATTTGACCTTACCTACCATCATTTTGTTTGGAGACATCTTAAGGTATTTGCATGTCTTAAGTTTCTTGCTCACTGCTTTTGGAATT

mRNA sequence

TAATCGCGTATTTGGAAATTACCTCCTTCAGTCTCGCGCCTGTGGCTGTGGCATGTTATCCTCTGCCACGACCTAACCCTAAACCCTTCGTCATCAATTCCGGTCGCTGCAGGAGGATCTCCAGCACGGAAGCCAAGCGCCAGTTCTTCTTTGAGTCCTTGCTGAGCCGCGGTTCCAGGTTTTGGTGCAGTCTAGTTCGTCACTTTCCCAGTCTTTGGAATAATATTTCAAACACTCGGACTAATTTGTTTCCTTGAAGATGAGTAGTCGTTTTTCCCGCACGATATATGTTGGAAACTTGCCCTCGGACATAAGAGAGAATGAAATTGAAGATTTGTTCTACAAGTATGGTCGAATTTTGGATATTGAATTGAAGATTCCGCCGCGCCCTCCATGTTATTGTTTTGTGGAGTTTGAGAATGTTAGGGATGCAGAAGATGCAATTCGAGGTCGTGATGGATATAATTTTGATGGTTGCCGCCTAAGGGTTGAACTTGCACATGGTGGTAGAGGCCCTTCATCAAGTGATCATCGTAGCAATTATGGTGGCAGTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGTTATTGTACGGGGACTCCCATCTTCTGCTTCTTGGCAGGATTTGAAGGATCATATGCGCAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCCCATGACAGCGAAGGGACATTTGGGACTGTTGATTATACAAACTATGACGACATGAAGTATGCTATTCGAAAACTTGACGATACAGAATTCAAAAATCCTTGGGCAAGAGCATACATTCGGGTGAAAAAGTACGAAGGCAGTCCCACTAGGGGTCGGAGCAGAAACAGAAGCAGAAGCCGTAGTAGGAGCCGGAGCCGGAGCCGAAGCCGAAGCCGAAGTGCGAGGCGAAATAGGAGCAAATCAGCCGAACAATCTGTTTCTAGATCAGTTTCAAGATCAAGATCTCTATCCCCTGTTAAATCTTCAAGACGACGTTCAAAATCAAGATCTGGATCACCACGTGAGGTCATTGTTAGTTTTGTTATTATTGGTGGCAGGGGTAGTTGCCAATGGGAAAGGCACGAGAAGGTAGCGGATGATAATATGAAGCTATAATGATAGGAACGGTTGTTATAATATCGACGAATGCAACATTCGGTTGGATTTCATGTTAGTTTAGGACCTATTATATGCTTGACTGGTTATGAGGAGTTGAGTTATCTGAAGAATATGGCTTGAGTTGTATGGATATCTTTCAAATCCTTCTCATGTATTTGACCTTACCTACCATCATTTTGTTTGGAGACATCTTAAGGTATTTGCATGTCTTAAGTTTCTTGCTCACTGCTTTTGGAATT

Coding sequence (CDS)

ATGAGTAGTCGTTTTTCCCGCACGATATATGTTGGAAACTTGCCCTCGGACATAAGAGAGAATGAAATTGAAGATTTGTTCTACAAGTATGGTCGAATTTTGGATATTGAATTGAAGATTCCGCCGCGCCCTCCATGTTATTGTTTTGTGGAGTTTGAGAATGTTAGGGATGCAGAAGATGCAATTCGAGGTCGTGATGGATATAATTTTGATGGTTGCCGCCTAAGGGTTGAACTTGCACATGGTGGTAGAGGCCCTTCATCAAGTGATCATCGTAGCAATTATGGTGGCAGTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGTTATTGTACGGGGACTCCCATCTTCTGCTTCTTGGCAGGATTTGAAGGATCATATGCGCAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCCCATGACAGCGAAGGGACATTTGGGACTGTTGATTATACAAACTATGACGACATGAAGTATGCTATTCGAAAACTTGACGATACAGAATTCAAAAATCCTTGGGCAAGAGCATACATTCGGGTGAAAAAGTACGAAGGCAGTCCCACTAGGGGTCGGAGCAGAAACAGAAGCAGAAGCCGTAGTAGGAGCCGGAGCCGGAGCCGAAGCCGAAGCCGAAGTGCGAGGCGAAATAGGAGCAAATCAGCCGAACAATCTGTTTCTAGATCAGTTTCAAGATCAAGATCTCTATCCCCTGTTAAATCTTCAAGACGACGTTCAAAATCAAGATCTGGATCACCACGTGAGGTCATTGTTAGTTTTGTTATTATTGGTGGCAGGGGTAGTTGCCAATGGGAAAGGCACGAGAAGGTAGCGGATGATAATATGAAGCTATAA

Protein sequence

MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSAEQSVSRSVSRSRSLSPVKSSRRRSKSRSGSPREVIVSFVIIGGRGSCQWERHEKVADDNMKL
Homology
BLAST of Cp4.1LG05g05770 vs. ExPASy Swiss-Prot
Match: A2RVS6 (Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR34A PE=2 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 2.8e-104
Identity = 210/288 (72.92%), Postives = 235/288 (81.60%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSR+IYVGNLP DIRE+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE+ RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS----GGGGGGGGGGRFGVSKRS 120
           AI+GRDGYN DGCRLRVELAHGGRG SSSD R  YGG     GGGGGGGG  RFGVS+ S
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120

Query: 121 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLD 180
           E+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+ DS+GT+G VDYTNYDDMKYAIRKLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 181 DTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSR------------SRSRSA 240
           DTEF+NPWAR +IRVKKYE S +R RS +RSRSRSRSRSRSR            SRS+S 
Sbjct: 181 DTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSP 240

Query: 241 RRNRSKSAEQSVSRSVSRSRSLSPVKS---------SRRRSKSRSGSP 264
           R++ SKS  +S+SRS+S+SRS SP K          S+ RS+SRS SP
Sbjct: 241 RKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSRSRSRSP 288

BLAST of Cp4.1LG05g05770 vs. ExPASy Swiss-Prot
Match: O22315 (Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR34 PE=1 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 1.4e-79
Identity = 177/278 (63.67%), Postives = 214/278 (76.98%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR SRT+YVGNLP DIRE E+EDLF KYG ++ I+LK+PPRPP Y FVEF++ RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNY--GGSGGGGGGGGGGRFGVSKRSEY 120
           AI GRDGY+FDG RLRVELAHGGR  SS D R ++  GG GGG G G GG  G S+RSE+
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEF 120

Query: 121 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDT 180
           RV+V GLPSSASWQDLKDHMRK GDVCF++V  D+ GT G VDYT Y+DMKYA++KLDDT
Sbjct: 121 RVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDT 180

Query: 181 EFKNPWARAYIRVKKYEG-----SPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRS---K 240
           EF+N ++  Y+RV++Y+      SP+RGRS ++SRSRSR RS SRSRSRS  R+RS   K
Sbjct: 181 EFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAK 240

Query: 241 SAEQSVSRSVS-----RSRSLSPVKSSRRRSKSRSGSP 264
           S+ +S ++S S     RS+S SP   S RRS+SRS SP
Sbjct: 241 SSRRSPAKSTSRSPGPRSKSRSP---SPRRSRSRSRSP 274

BLAST of Cp4.1LG05g05770 vs. ExPASy Swiss-Prot
Match: F4JHI7 (Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR34B PE=2 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 2.2e-77
Identity = 178/272 (65.44%), Postives = 209/272 (76.84%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR SRTIYVGNLP DIRE E+EDLF KYG ++ I+LKIPPRPP Y FVEFE+ RDA+D
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYG--GSGGGGGGGGGGR-FGVSKRSE 120
           AI GRDGY+FDG  LRVELAHGGR  SS D R +Y   G GG GGG GGGR  G S+RSE
Sbjct: 61  AIYGRDGYDFDGHHLRVELAHGGR-RSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSE 120

Query: 121 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDD 180
           YRV+V GLPSSASWQDLKDHMRK G+VCF++V  D  GT G VDYT+Y+DMKYA   LDD
Sbjct: 121 YRVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYA---LDD 180

Query: 181 TEFKNPWARAYIRVKKYEG-----SPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSA 240
           TEF+N ++  Y+RV++Y+      SP+RGRS ++SRSR RS SRSRSRSRS  ++RS  A
Sbjct: 181 TEFRNAFSHEYVRVREYDSRRDSRSPSRGRSYSKSRSRGRSPSRSRSRSRSRSKSRSPKA 240

Query: 241 EQSVSRSVSRSRSLSPVKSSRRRSKSRSGSPR 265
            +S+ RS ++S S SP   SR RSKSRS SPR
Sbjct: 241 -KSLRRSPAKSTSRSP--RSRSRSKSRSLSPR 265

BLAST of Cp4.1LG05g05770 vs. ExPASy Swiss-Prot
Match: Q9XFR5 (Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR30 PE=1 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 2.6e-73
Identity = 175/281 (62.28%), Postives = 208/281 (74.02%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR++RTIYVGNLP DIR+ E+EDLFYKYG I+DI+LKIPPRPP Y FVEFE+ RDA+D
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGR--GPSSSDHRSNYGGSGGGGGGGGGGRFGVSKRSEY 120
           AI GRDGY+FDGCRLRVE+AHGGR   PS   + S+Y  S              S+RS+Y
Sbjct: 61  AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSSSYSASR-----------APSRRSDY 120

Query: 121 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDT 180
           RV+V GLP SASWQDLKDHMRKAGDVCF+EV  D +G  G VDY+NYDDMKYAIRKLD T
Sbjct: 121 RVLVTGLPPSASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDAT 180

Query: 181 EFKNPWARAYIRVKKYEGSPTRGRSRNRSRS-RSRSRSRSRSRSRSARRNRSKSAEQSV- 240
           EF+N ++ AYIRV++YE S +  RS + S+S RSRSRSR  S S S+ ++RS S  +S+ 
Sbjct: 181 EFRNAFSSAYIRVREYE-SRSVSRSPDDSKSYRSRSRSRGPSCSYSS-KSRSVSPARSIS 240

Query: 241 --SRSVSRSRSL-SPVKSSRRRSKSRSGSPREVIVSFVIIG 275
             SR +SRSRSL S V  S+ RSKSRS S     VS VI G
Sbjct: 241 PRSRPLSRSRSLYSSVSRSQSRSKSRSRSRSNSPVSPVISG 268

BLAST of Cp4.1LG05g05770 vs. ExPASy Swiss-Prot
Match: Q7SXP4 (Serine/arginine-rich splicing factor 1A OS=Danio rerio OX=7955 GN=srsf1a PE=2 SV=2)

HSP 1 Score: 221.1 bits (562), Expect = 1.7e-56
Identity = 146/245 (59.59%), Postives = 174/245 (71.02%), Query Frame = 0

Query: 9   IYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRGRDGY 68
           IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+  RDGY
Sbjct: 17  IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGY 76

Query: 69  NFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGG---GRFG-VSKRSEYRVIVRG 128
           ++DG RLRVE    GRG          GG GGGGGGGGG   GR+G  S+RSEYRVIV G
Sbjct: 77  DYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIVSG 136

Query: 129 LPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFK-NP 188
           LP S SWQDLKDHMR+AGDVC+A+V  D  GT G V++   +DM YA+RKLD+T+F+ + 
Sbjct: 137 LPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRSHE 196

Query: 189 WARAYIRVKKYEG--SPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSAEQ-SVSRSV 246
              AYIRV K +G  SP+ GRSR+RSRSRSRSRSRS +RSRS    RS+ + Q S   S 
Sbjct: 197 GETAYIRV-KVDGPRSPSYGRSRSRSRSRSRSRSRSNNRSRSYSPRRSRGSPQYSPRHSR 256

BLAST of Cp4.1LG05g05770 vs. NCBI nr
Match: XP_023533518.1 (serine/arginine-rich splicing factor SR34A-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 502 bits (1293), Expect = 3.02e-178
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGGRFGVSKRSEYRV 120
           AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGGRFGVSKRSEYRV
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGGRFGVSKRSEYRV 120

Query: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF 180
           IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF
Sbjct: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF 180

Query: 181 KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSAEQSVSRSV 240
           KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSAEQSVSRSV
Sbjct: 181 KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSAEQSVSRSV 240

Query: 241 SRSRSLSPVKSSRRRSKSRSGSPRE 265
           SRSRSLSPVKSSRRRSKSRSGSPRE
Sbjct: 241 SRSRSLSPVKSSRRRSKSRSGSPRE 265

BLAST of Cp4.1LG05g05770 vs. NCBI nr
Match: XP_023533513.1 (serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533515.1 serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533516.1 serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533517.1 serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 496 bits (1278), Expect = 6.76e-176
Identity = 265/269 (98.51%), Postives = 265/269 (98.51%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYK----YGRILDIELKIPPRPPCYCFVEFENVR 60
           MSSRFSRTIYVGNLPSDIRENEIEDLFYK    YGRILDIELKIPPRPPCYCFVEFENVR
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKFLWQYGRILDIELKIPPRPPCYCFVEFENVR 60

Query: 61  DAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGGRFGVSKRS 120
           DAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGGRFGVSKRS
Sbjct: 61  DAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGGRFGVSKRS 120

Query: 121 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLD 180
           EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLD
Sbjct: 121 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLD 180

Query: 181 DTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSAEQSV 240
           DTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSAEQSV
Sbjct: 181 DTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSAEQSV 240

Query: 241 SRSVSRSRSLSPVKSSRRRSKSRSGSPRE 265
           SRSVSRSRSLSPVKSSRRRSKSRSGSPRE
Sbjct: 241 SRSVSRSRSLSPVKSSRRRSKSRSGSPRE 269

BLAST of Cp4.1LG05g05770 vs. NCBI nr
Match: KAG7035774.1 (Serine/arginine-rich splicing factor SR34A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 488 bits (1256), Expect = 1.09e-172
Identity = 259/265 (97.74%), Postives = 259/265 (97.74%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGGRFGVSKRSEYRV 120
           AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS     GGGGGRFGVSKRSEYRV
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS-----GGGGGRFGVSKRSEYRV 120

Query: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF 180
           IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF
Sbjct: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF 180

Query: 181 KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSAEQSVSRSV 240
           KNPWARAYIRVKKYEGSPTRGRSRNRSRSRS SRSRSRSRSRSARRNRSKSAEQSVSRSV
Sbjct: 181 KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSHSRSRSRSRSRSARRNRSKSAEQSVSRSV 240

Query: 241 SRSRSLSPVKSSRRRSKSRSGSPRE 265
           SRSRSLSPVKSSRRRSKSRSGSPRE
Sbjct: 241 SRSRSLSPVKSSRRRSKSRSGSPRE 260

BLAST of Cp4.1LG05g05770 vs. NCBI nr
Match: XP_022996414.1 (serine/arginine-rich splicing factor SR34A-like [Cucurbita maxima] >XP_022996415.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita maxima] >XP_022996416.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita maxima] >XP_022996417.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita maxima])

HSP 1 Score: 484 bits (1245), Expect = 5.58e-171
Identity = 259/267 (97.00%), Postives = 260/267 (97.38%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGGRFGVSKRSEYRV 120
           AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS     GGGGGRFGVSKRSEYRV
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS-----GGGGGRFGVSKRSEYRV 120

Query: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF 180
           IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF
Sbjct: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF 180

Query: 181 KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRS--ARRNRSKSAEQSVSR 240
           KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRS  A+RNRSKSAEQSVSR
Sbjct: 181 KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSRSAKRNRSKSAEQSVSR 240

Query: 241 SVSRSRSLSPVKSSRRRSKSRSGSPRE 265
           SVSRSRSLSPVKSSRRRSKSRSGSPRE
Sbjct: 241 SVSRSRSLSPVKSSRRRSKSRSGSPRE 262

BLAST of Cp4.1LG05g05770 vs. NCBI nr
Match: XP_022958290.1 (serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata] >XP_022958291.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata] >XP_022958292.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata] >XP_022958294.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata] >XP_022958295.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata])

HSP 1 Score: 478 bits (1231), Expect = 6.09e-169
Identity = 255/265 (96.23%), Postives = 255/265 (96.23%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGGRFGVSKRSEYRV 120
           AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS     GGGGGRFGVSKRSEYRV
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS-----GGGGGRFGVSKRSEYRV 120

Query: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF 180
           IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF
Sbjct: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF 180

Query: 181 KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSAEQSVSRSV 240
           KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRS     RRNRSKSAEQSVSRSV
Sbjct: 181 KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRS----VRRNRSKSAEQSVSRSV 240

Query: 241 SRSRSLSPVKSSRRRSKSRSGSPRE 265
           SRSRSLSPVKSSRRRSKSRSGSPRE
Sbjct: 241 SRSRSLSPVKSSRRRSKSRSGSPRE 256

BLAST of Cp4.1LG05g05770 vs. ExPASy TrEMBL
Match: A0A6J1K1U7 (serine/arginine-rich splicing factor SR34A-like OS=Cucurbita maxima OX=3661 GN=LOC111491646 PE=4 SV=1)

HSP 1 Score: 484 bits (1245), Expect = 2.70e-171
Identity = 259/267 (97.00%), Postives = 260/267 (97.38%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGGRFGVSKRSEYRV 120
           AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS     GGGGGRFGVSKRSEYRV
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS-----GGGGGRFGVSKRSEYRV 120

Query: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF 180
           IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF
Sbjct: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF 180

Query: 181 KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRS--ARRNRSKSAEQSVSR 240
           KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRS  A+RNRSKSAEQSVSR
Sbjct: 181 KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSRSAKRNRSKSAEQSVSR 240

Query: 241 SVSRSRSLSPVKSSRRRSKSRSGSPRE 265
           SVSRSRSLSPVKSSRRRSKSRSGSPRE
Sbjct: 241 SVSRSRSLSPVKSSRRRSKSRSGSPRE 262

BLAST of Cp4.1LG05g05770 vs. ExPASy TrEMBL
Match: A0A6J1H330 (serine/arginine-rich splicing factor SR34A-like OS=Cucurbita moschata OX=3662 GN=LOC111459559 PE=4 SV=1)

HSP 1 Score: 478 bits (1231), Expect = 2.95e-169
Identity = 255/265 (96.23%), Postives = 255/265 (96.23%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGGRFGVSKRSEYRV 120
           AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS     GGGGGRFGVSKRSEYRV
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS-----GGGGGRFGVSKRSEYRV 120

Query: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF 180
           IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF
Sbjct: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF 180

Query: 181 KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSAEQSVSRSV 240
           KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRS     RRNRSKSAEQSVSRSV
Sbjct: 181 KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRS----VRRNRSKSAEQSVSRSV 240

Query: 241 SRSRSLSPVKSSRRRSKSRSGSPRE 265
           SRSRSLSPVKSSRRRSKSRSGSPRE
Sbjct: 241 SRSRSLSPVKSSRRRSKSRSGSPRE 256

BLAST of Cp4.1LG05g05770 vs. ExPASy TrEMBL
Match: A0A0A0KLR9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138510 PE=4 SV=1)

HSP 1 Score: 453 bits (1165), Expect = 6.88e-159
Identity = 246/276 (89.13%), Postives = 256/276 (92.75%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDI+E EIEDLFYKYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGG----------RF 120
           AIR RDGYNFDGCRLRVELAHGGRGPSSSD RS+YGG GGGGGGGGGG          RF
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRF 120

Query: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKY 180
           GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS DSEGTFG VDYTNYDDMKY
Sbjct: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180

Query: 181 AIRKLDDTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSK 240
           AIRKLDDTEF+NPWARAYIRVKKY+GSPTR RSR+RSRSRSRSRSRSRSRSR+ARRNRSK
Sbjct: 181 AIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTARRNRSK 240

Query: 241 SAEQ-SVSRSVSRSRSLSPVKSSRRRSKSRSGSPRE 265
           SAE+ SVSRSVSRSRS SP+KSSR RSKSRSGSPR+
Sbjct: 241 SAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQ 276

BLAST of Cp4.1LG05g05770 vs. ExPASy TrEMBL
Match: A0A6J1C7M8 (serine/arginine-rich splicing factor SR34A OS=Momordica charantia OX=3673 GN=LOC111009138 PE=4 SV=1)

HSP 1 Score: 452 bits (1163), Expect = 1.12e-158
Identity = 246/272 (90.44%), Postives = 253/272 (93.01%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDI+E EIEDLFYKYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGG-------RFGVS 120
           AIR RDGYNFDGCRLRVELAHGGRGPSSSD RS+YGG GGGGGGGGGG       RFGVS
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGRFGVS 120

Query: 121 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIR 180
           KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS D+EGTFG VDYTNYDDMKYAIR
Sbjct: 121 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKYAIR 180

Query: 181 KLDDTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSAE 240
           KLDDTEFKNPWARAYIRVKKY+GSPTR RSR  SRSRSRSRSRS+SRSRSARRNRSKS E
Sbjct: 181 KLDDTEFKNPWARAYIRVKKYDGSPTRSRSR--SRSRSRSRSRSQSRSRSARRNRSKSVE 240

Query: 241 QSVSRSVSRSRSLSPVKSSRRRSKSRSGSPRE 265
           +SVSRSVSRSRS SPVKSSR RSKSRSGSPRE
Sbjct: 241 RSVSRSVSRSRSPSPVKSSRPRSKSRSGSPRE 270

BLAST of Cp4.1LG05g05770 vs. ExPASy TrEMBL
Match: A0A6J1IFY5 (serine/arginine-rich splicing factor SR34A-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111472973 PE=4 SV=1)

HSP 1 Score: 427 bits (1099), Expect = 7.15e-149
Identity = 233/280 (83.21%), Postives = 241/280 (86.07%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDI+E EIEDLF+KYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFHKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGGRFGVSKRSEYRV 120
           AIR RDGYNFDGCRLRVELAHGGRGPSSSD RS+YGG GGGGGGGGGGRFGVSKRSEYRV
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGRFGVSKRSEYRV 120

Query: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF 180
           IVRGLPSSASWQDLKDHMRKAGDVCFAEVS DSEGTFG VDYTNYDDMKYAIRKLDDTEF
Sbjct: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAIRKLDDTEF 180

Query: 181 KNPWARAYIRVKKYEGSPTRGRSRNRSRS-----------------------------RS 240
           +NPWAR YIRVKKY+GSPTR RSR+RSRS                             +S
Sbjct: 181 RNPWARGYIRVKKYDGSPTRSRSRSRSRSSRSRSRSRSRSRSRSRSRGRDRSRSRNRSQS 240

Query: 241 RSRSRSRSRSRSARRNRSKSAEQSVSRSVSRSRSLSPVKS 251
           RSRSRSRSRSRSAR NRSKSAE+SVSRSVSRSRS SPVKS
Sbjct: 241 RSRSRSRSRSRSARPNRSKSAERSVSRSVSRSRSPSPVKS 280

BLAST of Cp4.1LG05g05770 vs. TAIR 10
Match: AT3G49430.1 (SER/ARG-rich protein 34A )

HSP 1 Score: 379.8 bits (974), Expect = 2.0e-105
Identity = 210/288 (72.92%), Postives = 235/288 (81.60%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSR+IYVGNLP DIRE+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE+ RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS----GGGGGGGGGGRFGVSKRS 120
           AI+GRDGYN DGCRLRVELAHGGRG SSSD R  YGG     GGGGGGGG  RFGVS+ S
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120

Query: 121 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLD 180
           E+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+ DS+GT+G VDYTNYDDMKYAIRKLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 181 DTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSR------------SRSRSA 240
           DTEF+NPWAR +IRVKKYE S +R RS +RSRSRSRSRSRSR            SRS+S 
Sbjct: 181 DTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSP 240

Query: 241 RRNRSKSAEQSVSRSVSRSRSLSPVKS---------SRRRSKSRSGSP 264
           R++ SKS  +S+SRS+S+SRS SP K          S+ RS+SRS SP
Sbjct: 241 RKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSRSRSRSP 288

BLAST of Cp4.1LG05g05770 vs. TAIR 10
Match: AT3G49430.3 (SER/ARG-rich protein 34A )

HSP 1 Score: 379.8 bits (974), Expect = 2.0e-105
Identity = 210/288 (72.92%), Postives = 235/288 (81.60%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSR+IYVGNLP DIRE+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE+ RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS----GGGGGGGGGGRFGVSKRS 120
           AI+GRDGYN DGCRLRVELAHGGRG SSSD R  YGG     GGGGGGGG  RFGVS+ S
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120

Query: 121 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLD 180
           E+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+ DS+GT+G VDYTNYDDMKYAIRKLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 181 DTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSR------------SRSRSA 240
           DTEF+NPWAR +IRVKKYE S +R RS +RSRSRSRSRSRSR            SRS+S 
Sbjct: 181 DTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSP 240

Query: 241 RRNRSKSAEQSVSRSVSRSRSLSPVKS---------SRRRSKSRSGSP 264
           R++ SKS  +S+SRS+S+SRS SP K          S+ RS+SRS SP
Sbjct: 241 RKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSRSRSRSP 288

BLAST of Cp4.1LG05g05770 vs. TAIR 10
Match: AT3G49430.2 (SER/ARG-rich protein 34A )

HSP 1 Score: 376.3 bits (965), Expect = 2.2e-104
Identity = 208/288 (72.22%), Postives = 233/288 (80.90%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSR+IYVGNLP DIRE+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE+ RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS----GGGGGGGGGGRFGVSKRS 120
           AI+GRDGYN DGCRLRVELAHGGRG SSSD R  YGG     GGGGGGGG  RFGVS+ S
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120

Query: 121 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLD 180
           E+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+ DS+GT+G VDYTNYDDMKYAIRKLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 181 DTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSR------------SRSRSA 240
           DTEF+NPWAR +IRVKKYE S +R RS +RSRSRSRSRSRSR            SRS+S 
Sbjct: 181 DTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSP 240

Query: 241 RRNRSKSAEQSVSRSVSRSRSLSPVKSSRRRSKSRSGSPREVIV-SFV 272
           R++ SKS  +S+SRS+S+SRS SP K        +   PR+V   SFV
Sbjct: 241 RKDLSKSPRRSLSRSISKSRSPSPDK--------KKSPPRQVFCPSFV 280

BLAST of Cp4.1LG05g05770 vs. TAIR 10
Match: AT1G02840.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 297.7 bits (761), Expect = 1.0e-80
Identity = 177/278 (63.67%), Postives = 214/278 (76.98%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR SRT+YVGNLP DIRE E+EDLF KYG ++ I+LK+PPRPP Y FVEF++ RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNY--GGSGGGGGGGGGGRFGVSKRSEY 120
           AI GRDGY+FDG RLRVELAHGGR  SS D R ++  GG GGG G G GG  G S+RSE+
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEF 120

Query: 121 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDT 180
           RV+V GLPSSASWQDLKDHMRK GDVCF++V  D+ GT G VDYT Y+DMKYA++KLDDT
Sbjct: 121 RVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDT 180

Query: 181 EFKNPWARAYIRVKKYEG-----SPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRS---K 240
           EF+N ++  Y+RV++Y+      SP+RGRS ++SRSRSR RS SRSRSRS  R+RS   K
Sbjct: 181 EFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAK 240

Query: 241 SAEQSVSRSVS-----RSRSLSPVKSSRRRSKSRSGSP 264
           S+ +S ++S S     RS+S SP   S RRS+SRS SP
Sbjct: 241 SSRRSPAKSTSRSPGPRSKSRSP---SPRRSRSRSRSP 274

BLAST of Cp4.1LG05g05770 vs. TAIR 10
Match: AT1G02840.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 297.7 bits (761), Expect = 1.0e-80
Identity = 176/274 (64.23%), Postives = 210/274 (76.64%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR SRT+YVGNLP DIRE E+EDLF KYG ++ I+LK+PPRPP Y FVEF++ RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNY--GGSGGGGGGGGGGRFGVSKRSEY 120
           AI GRDGY+FDG RLRVELAHGGR  SS D R ++  GG GGG G G GG  G S+RSE+
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEF 120

Query: 121 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDT 180
           RV+V GLPSSASWQDLKDHMRK GDVCF++V  D+ GT G VDYT Y+DMKYA++KLDDT
Sbjct: 121 RVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDT 180

Query: 181 EFKNPWARAYIRVKKYEG-----SPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSAE 240
           EF+N ++  Y+RV++Y+      SP+RGRS ++SRSRSR RS SRSRSRS  R+RS  A+
Sbjct: 181 EFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAK 240

Query: 241 QSVSRSVSRSRSLSPVKSSRRRSKSRSGSPREVI 268
            S  RS ++S S SP      RSKSRS SPR  I
Sbjct: 241 SS-RRSPAKSTSRSP----GPRSKSRSPSPRRWI 268

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A2RVS62.8e-10472.92Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR... [more]
O223151.4e-7963.67Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR3... [more]
F4JHI72.2e-7765.44Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR... [more]
Q9XFR52.6e-7362.28Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR3... [more]
Q7SXP41.7e-5659.59Serine/arginine-rich splicing factor 1A OS=Danio rerio OX=7955 GN=srsf1a PE=2 SV... [more]
Match NameE-valueIdentityDescription
XP_023533518.13.02e-178100.00serine/arginine-rich splicing factor SR34A-like isoform X2 [Cucurbita pepo subsp... [more]
XP_023533513.16.76e-17698.51serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp... [more]
KAG7035774.11.09e-17297.74Serine/arginine-rich splicing factor SR34A [Cucurbita argyrosperma subsp. argyro... [more]
XP_022996414.15.58e-17197.00serine/arginine-rich splicing factor SR34A-like [Cucurbita maxima] >XP_022996415... [more]
XP_022958290.16.09e-16996.23serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata] >XP_0229582... [more]
Match NameE-valueIdentityDescription
A0A6J1K1U72.70e-17197.00serine/arginine-rich splicing factor SR34A-like OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1H3302.95e-16996.23serine/arginine-rich splicing factor SR34A-like OS=Cucurbita moschata OX=3662 GN... [more]
A0A0A0KLR96.88e-15989.13Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138510 PE=4 SV=1[more]
A0A6J1C7M81.12e-15890.44serine/arginine-rich splicing factor SR34A OS=Momordica charantia OX=3673 GN=LOC... [more]
A0A6J1IFY57.15e-14983.21serine/arginine-rich splicing factor SR34A-like isoform X3 OS=Cucurbita maxima O... [more]
Match NameE-valueIdentityDescription
AT3G49430.12.0e-10572.92SER/ARG-rich protein 34A [more]
AT3G49430.32.0e-10572.92SER/ARG-rich protein 34A [more]
AT3G49430.22.2e-10472.22SER/ARG-rich protein 34A [more]
AT1G02840.11.0e-8063.67RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT1G02840.21.0e-8064.23RNA-binding (RRM/RBD/RNP motifs) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 119..188
e-value: 5.1E-7
score: 39.3
coord: 8..78
e-value: 3.1E-22
score: 89.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 9..76
e-value: 9.8E-19
score: 67.0
coord: 120..182
e-value: 1.1E-11
score: 44.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 118..196
score: 9.848526
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 7..82
score: 16.790073
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 117..195
e-value: 4.2E-23
score: 83.0
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..114
e-value: 1.9E-27
score: 98.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 195..263
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 203..225
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 233..247
NoneNo IPR availablePANTHERPTHR23147:SF63SERINE/ARGININE-RICH SPLICING FACTOR SR34Acoord: 2..265
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 2..265
NoneNo IPR availableCDDcd12599RRM1_SF2_plant_likecoord: 8..79
e-value: 7.42635E-45
score: 144.91
NoneNo IPR availableCDDcd12602RRM2_SF2_plant_likecoord: 118..193
e-value: 2.30252E-42
score: 138.408
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 6..189

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g05770.1Cp4.1LG05g05770.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0016607 nuclear speck
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding