Cp4.1LG03g15050 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTTATTATTTTTATTTCCACATTATCTTCCCCCTTCACATTTCTGCGTCCGCGGCCTCAATTTTGCCGATAAACAAACCACACCCAACTATGGCGTCTTCCCTAATCGCTTCTCAAGCTCTGCCCCTCCGACGCCCCGTTCTCCCGCCGAAGCTCCACCCTTCTATTGCCATTTATTCCCACTCCTTCAACCGCCCACTACCTTCTCCGCTCCCCCTCCGTTTCTGCACCGCCAACTCTCCAAATCACGGCCTTAGGGTTTTAGCTTCCTCATCGCCTTCTGCTTATTCACCAAAACTTTCCAATCAATCAGAAGAAATTCCGATTGGATCTCTCCTTACCGGTCCGACCCGGGTACTTGCTACTATTCTATCTATATCCTTAACATTTTCGACCTTGATTGTCAAACTGGTTCAGAATGTTTGGCCGAGTTTGATTGCCCAATGTCTCGTAAATCCATGTACTGGGCTCGGTGCCTTCCAGCCGGCTGGCTCTTTGTTCTTCGCTGCACTAGTCGACCGCCCTGGCGGAAATCTCAACACGCCTTTGACGGTGGTGGCTGCGGGGTTGGCCAAGTGGCTGGATATTTACAGTGGGGTTCTGCTGGTTAGGGTTTTGCTGAGTTGGTTCCCCAATATCCCTTGGGACCGGCAGCCACTCTCTGCAATTCGTGATCTCTGTGATCCGTACTTGAACCTGTTCCGGAATATAATCCCTCCAATATTCGACACCCTGGATGTTAGCCCACTTTTGGCTTTTGCTGTTCTGGGCACACTAGGGTCAATTCTGAAAAAGTAGCAGGGGCATGTATTGAAGGAGGCTACGAGTGGATTTGGTTGGTTGGTTGGTTAGTGGCGGAATTTACGACGAGTAAGGTATAATTCAATTCATCAAAATTTGGATTTGAGTTTTGGGGTTTTGGATATATCGTAATTTGCTTTTATTTCTGTTTTTCTTCTTCAGGGGATTTGAGTTTGCGAGACATGATTGTAAATTTTAGTTAAAACAGTTGAATTTTGACAGCTTTTAATGAAGCATTTGTTCGATGAGGTTATCGTTTCGGTTTATGTAATCTCCGTTTCAGACTTAGAAAAGGATGGTATATTTGAATTTGTTTGCTCGGCATAAATTATCATCTGCTGTGGTACTTTTCAGCAGTTTTACTACCCAGCCTTTTGCATACAGCTTGCTGAATGATTTAACACTGCTCCGATTACTATCTTTGCTATGTTTATGTTATAAGAATAATATATGGGCTAAGAATATAAAGGTGGTAATCA GTTATTATTTTTATTTCCACATTATCTTCCCCCTTCACATTTCTGCGTCCGCGGCCTCAATTTTGCCGATAAACAAACCACACCCAACTATGGCGTCTTCCCTAATCGCTTCTCAAGCTCTGCCCCTCCGACGCCCCGTTCTCCCGCCGAAGCTCCACCCTTCTATTGCCATTTATTCCCACTCCTTCAACCGCCCACTACCTTCTCCGCTCCCCCTCCGTTTCTGCACCGCCAACTCTCCAAATCACGGCCTTAGGGTTTTAGCTTCCTCATCGCCTTCTGCTTATTCACCAAAACTTTCCAATCAATCAGAAGAAATTCCGATTGGATCTCTCCTTACCGGTCCGACCCGGGTACTTGCTACTATTCTATCTATATCCTTAACATTTTCGACCTTGATTGTCAAACTGGTTCAGAATGTTTGGCCGAGTTTGATTGCCCAATGTCTCGTAAATCCATGTACTGGGCTCGGTGCCTTCCAGCCGGCTGGCTCTTTGTTCTTCGCTGCACTAGTCGACCGCCCTGGCGGAAATCTCAACACGCCTTTGACGGTGGTGGCTGCGGGGTTGGCCAAGTGGCTGGATATTTACAGTGGGGTTCTGCTGGTTAGGGTTTTGCTGAGTTGGTTCCCCAATATCCCTTGGGACCGGCAGCCACTCTCTGCAATTCGTGATCTCTGTGATCCGTACTTGAACCTGTTCCGGAATATAATCCCTCCAATATTCGACACCCTGGATGTTAGCCCACTTTTGGCTTTTGCTGTTCTGGGCACACTAGGGGGATTTGAGTTTGCGAGACATGATTGTAAATTTTAGTTAAAACAGTTGAATTTTGACAGCTTTTAATGAAGCATTTGTTCGATGAGGTTATCGTTTCGGTTTATGTAATCTCCGTTTCAGACTTAGAAAAGGATGGTATATTTGAATTTGTTTGCTCGGCATAAATTATCATCTGCTGTGGTACTTTTCAGCAGTTTTACTACCCAGCCTTTTGCATACAGCTTGCTGAATGATTTAACACTGCTCCGATTACTATCTTTGCTATGTTTATGTTATAAGAATAATATATGGGCTAAGAATATAAAGGTGGTAATCA ATGGCGTCTTCCCTAATCGCTTCTCAAGCTCTGCCCCTCCGACGCCCCGTTCTCCCGCCGAAGCTCCACCCTTCTATTGCCATTTATTCCCACTCCTTCAACCGCCCACTACCTTCTCCGCTCCCCCTCCGTTTCTGCACCGCCAACTCTCCAAATCACGGCCTTAGGGTTTTAGCTTCCTCATCGCCTTCTGCTTATTCACCAAAACTTTCCAATCAATCAGAAGAAATTCCGATTGGATCTCTCCTTACCGGTCCGACCCGGGTACTTGCTACTATTCTATCTATATCCTTAACATTTTCGACCTTGATTGTCAAACTGGTTCAGAATGTTTGGCCGAGTTTGATTGCCCAATGTCTCGTAAATCCATGTACTGGGCTCGGTGCCTTCCAGCCGGCTGGCTCTTTGTTCTTCGCTGCACTAGTCGACCGCCCTGGCGGAAATCTCAACACGCCTTTGACGGTGGTGGCTGCGGGGTTGGCCAAGTGGCTGGATATTTACAGTGGGGTTCTGCTGGTTAGGGTTTTGCTGAGTTGGTTCCCCAATATCCCTTGGGACCGGCAGCCACTCTCTGCAATTCGTGATCTCTGTGATCCGTACTTGAACCTGTTCCGGAATATAATCCCTCCAATATTCGACACCCTGGATGTTAGCCCACTTTTGGCTTTTGCTGTTCTGGGCACACTAGGGGGATTTGAGTTTGCGAGACATGATTGTAAATTTTAG MASSLIASQALPLRRPVLPPKLHPSIAIYSHSFNRPLPSPLPLRFCTANSPNHGLRVLASSSPSAYSPKLSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCLVNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGGFEFARHDCKF Homology
BLAST of Cp4.1LG03g15050 vs. ExPASy Swiss-Prot
Match: Q9SUE0 (YlmG homolog protein 1-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG1-2 PE=2 SV=1) HSP 1 Score: 195.3 bits (495), Expect = 8.0e-49 Identity = 125/229 (54.59%), Postives = 149/229 (65.07%), Query Frame = 0
BLAST of Cp4.1LG03g15050 vs. ExPASy Swiss-Prot
Match: Q9SRS3 (YlmG homolog protein 1-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG1-1 PE=2 SV=1) HSP 1 Score: 194.9 bits (494), Expect = 1.1e-48 Identity = 121/234 (51.71%), Postives = 152/234 (64.96%), Query Frame = 0
BLAST of Cp4.1LG03g15050 vs. ExPASy Swiss-Prot
Match: Q9C595 (YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG2 PE=2 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 3.5e-12 Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 0
BLAST of Cp4.1LG03g15050 vs. ExPASy Swiss-Prot
Match: O78424 (Uncharacterized protein ycf19 OS=Guillardia theta OX=55529 GN=ycf19 PE=3 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 1.8e-11 Identity = 31/78 (39.74%), Postives = 51/78 (65.38%), Query Frame = 0
BLAST of Cp4.1LG03g15050 vs. ExPASy Swiss-Prot
Match: P51353 (Uncharacterized protein ycf19 OS=Porphyra purpurea OX=2787 GN=ycf19 PE=3 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 3.7e-09 Identity = 28/77 (36.36%), Postives = 48/77 (62.34%), Query Frame = 0
BLAST of Cp4.1LG03g15050 vs. NCBI nr
Match: XP_023527027.1 (ylmG homolog protein 1-2, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 456 bits (1172), Expect = 2.68e-161 Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0
BLAST of Cp4.1LG03g15050 vs. NCBI nr
Match: XP_022956231.1 (ylmG homolog protein 1-2, chloroplastic [Cucurbita moschata] >XP_022956232.1 ylmG homolog protein 1-2, chloroplastic [Cucurbita moschata]) HSP 1 Score: 451 bits (1160), Expect = 1.81e-159 Identity = 228/230 (99.13%), Postives = 229/230 (99.57%), Query Frame = 0
BLAST of Cp4.1LG03g15050 vs. NCBI nr
Match: KAG7018212.1 (YlmG-like protein 1-2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 447 bits (1149), Expect = 8.59e-158 Identity = 227/230 (98.70%), Postives = 227/230 (98.70%), Query Frame = 0
BLAST of Cp4.1LG03g15050 vs. NCBI nr
Match: XP_022980718.1 (ylmG homolog protein 1-2, chloroplastic-like [Cucurbita maxima] >XP_022980719.1 ylmG homolog protein 1-2, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 446 bits (1146), Expect = 2.46e-157 Identity = 226/230 (98.26%), Postives = 226/230 (98.26%), Query Frame = 0
BLAST of Cp4.1LG03g15050 vs. NCBI nr
Match: KAG6581763.1 (YlmG-like protein 1-2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 421 bits (1083), Expect = 1.22e-147 Identity = 213/216 (98.61%), Postives = 213/216 (98.61%), Query Frame = 0
BLAST of Cp4.1LG03g15050 vs. ExPASy TrEMBL
Match: A0A6J1GVR7 (ylmG homolog protein 1-2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111457989 PE=4 SV=1) HSP 1 Score: 451 bits (1160), Expect = 8.75e-160 Identity = 228/230 (99.13%), Postives = 229/230 (99.57%), Query Frame = 0
BLAST of Cp4.1LG03g15050 vs. ExPASy TrEMBL
Match: A0A6J1J015 (ylmG homolog protein 1-2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480002 PE=4 SV=1) HSP 1 Score: 446 bits (1146), Expect = 1.19e-157 Identity = 226/230 (98.26%), Postives = 226/230 (98.26%), Query Frame = 0
BLAST of Cp4.1LG03g15050 vs. ExPASy TrEMBL
Match: A0A5D3C9Z4 (YlmG-like protein 1-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G00210 PE=4 SV=1) HSP 1 Score: 342 bits (877), Expect = 9.20e-117 Identity = 179/231 (77.49%), Postives = 195/231 (84.42%), Query Frame = 0
BLAST of Cp4.1LG03g15050 vs. ExPASy TrEMBL
Match: A0A1S3CC91 (ylmG homolog protein 1-2, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103499156 PE=4 SV=1) HSP 1 Score: 340 bits (871), Expect = 7.53e-116 Identity = 178/231 (77.06%), Postives = 194/231 (83.98%), Query Frame = 0
BLAST of Cp4.1LG03g15050 vs. ExPASy TrEMBL
Match: A0A5A7VBM7 (YlmG-like protein 1-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold90G00220 PE=4 SV=1) HSP 1 Score: 340 bits (871), Expect = 7.53e-116 Identity = 178/231 (77.06%), Postives = 194/231 (83.98%), Query Frame = 0
BLAST of Cp4.1LG03g15050 vs. TAIR 10
Match: AT4G27990.1 (YGGT family protein ) HSP 1 Score: 195.3 bits (495), Expect = 5.7e-50 Identity = 125/229 (54.59%), Postives = 149/229 (65.07%), Query Frame = 0
BLAST of Cp4.1LG03g15050 vs. TAIR 10
Match: AT3G07430.1 (YGGT family protein ) HSP 1 Score: 194.9 bits (494), Expect = 7.5e-50 Identity = 121/234 (51.71%), Postives = 152/234 (64.96%), Query Frame = 0
BLAST of Cp4.1LG03g15050 vs. TAIR 10
Match: AT5G21920.1 (YGGT family protein ) HSP 1 Score: 73.6 bits (179), Expect = 2.5e-13 Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 0
BLAST of Cp4.1LG03g15050 vs. TAIR 10
Match: AT5G21920.2 (YGGT family protein ) HSP 1 Score: 73.6 bits (179), Expect = 2.5e-13 Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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