CsGy3G019155 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G019155
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	GPI-anchor transamidase isoform X1
Location	Gy14Chr3: 15347749 .. 15348076 (+)
RNA-Seq Expression	CsGy3G019155
Synteny	CsGy3G019155

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTGGGTGTTTAGTGACGAATGTAGAGAAACGGTACAACTTTTAGGAGGTCCATGTTTCAACAAAACCTCTCTTTTACTATGGTTTAACGCGATAAAAGAAATTTCTGAGGAATTATGGTTTGAAAGGAATCAAAGGGTCTTCCACGACCACGACAGATCTCTCGGCTGGTTGGATTGTTATGAAGTCGCTAATAGAAATGTTTCGTCGTGGTGCATTCTCTCCAAGGAGATTGATAGTTACAGTACGTCAGAATTCAATTGAATTGGAGAACTTTTATTTCCTCAACTTAATTTGGGCATGGTGTTCATTGGCCTTTTTGTTC

mRNA sequence

ATGTCTTGGGTGTTTAGTGACGAATGTAGAGAAACGGTACAACTTTTAGGAGGTCCATGTTTCAACAAAACCTCTCTTTTACTATGGTTTAACGCGATAAAAGAAATTTCTGAGGAATTATGGTTTGAAAGGAATCAAAGGGTCTTCCACGACCACGACAGATCTCTCGGCTGGTTGGATTGTTATGAAGTCGCTAATAGAAATGTTTCGTCGTGGTGCATTCTCTCCAAGGAGATTGATAGTTACAGTACGTCAGAATTCAATTGAATTGGAGAACTTTTATTTCCTCAACTTAATTTGGGCATGGTGTTCATTGGCCTTTTTGTTC

Coding sequence (CDS)

ATGTCTTGGGTGTTTAGTGACGAATGTAGAGAAACGGTACAACTTTTAGGAGGTCCATGTTTCAACAAAACCTCTCTTTTACTATGGTTTAACGCGATAAAAGAAATTTCTGAGGAATTATGGTTTGAAAGGAATCAAAGGGTCTTCCACGACCACGACAGATCTCTCGGCTGGTTGGATTGTTATGAAGTCGCTAATAGAAATGTTTCGTCGTGGTGCATTCTCTCCAAGGAGATTGATAGTTACAGTACGTCAGAATTCAATTGA

Protein sequence

MSWVFSDECRETVQLLGGPCFNKTSLLLWFNAIKEISEELWFERNQRVFHDHDRSLGWLDCYEVANRNVSSWCILSKEIDSYSTSEFN*

Homology

[Close]

BLAST of CsGy3G019155 vs. NCBI nr
Match: XP_038903695.1 (uncharacterized protein LOC120090219 [Benincasa hispida])

HSP 1 Score: 77.4 bits (189), Expect = 1.91e-14
Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 6   SDECRETVQLLGGPCFNKTSLLLWFNAIKEISEELWFERNQRVFHDHDRSLGWLDCYEVA 65
           +D      QLL  P  +K++ LLW NA+K +  +LWFERNQR+F++  ++    D  E A
Sbjct: 227 NDFKSNVFQLLARPTSHKSTRLLWCNAVKALLADLWFERNQRIFYN--KATSCQDRLEAA 286

Query: 66  NRNVSSWCILSKEIDSYSTSEFN 88
            R  SSWC+LS    +YS S+FN
Sbjct: 287 RRQASSWCLLSDPFRAYSLSDFN 307

[Close]

BLAST of CsGy3G019155 vs. NCBI nr
Match: KAA0043277.1 (hypothetical protein E6C27_scaffold110G001660 [Cucumis melo var. makuwa] >TYK29341.1 hypothetical protein E5676_scaffold129G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 2.58e-10
Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 18  GPCFNKTSLLLWFNAIKEISEELWFERNQRVFHDHDRSLGWLDCYEVANRNVSSWCILSK 77
           GP  +K   +LW N  K +  E+WFER  R+FHD  R  GW +  + A RNV++WC L+K
Sbjct: 161 GPVLSKIRRVLWENMSKAMLAEIWFERKHRIFHDKTR--GWTETVDTAKRNVATWCSLNK 220

Query: 78  EID 80
             D
Sbjct: 221 RED 221

[Close]

BLAST of CsGy3G019155 vs. NCBI nr
Match: KAA0062564.1 (GPI-anchor transamidase isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 1.97e-09
Identity = 27/89 (30.34%), Postives = 47/89 (52.81%), Query Frame = 0


Query: 1   MSWVFSDECRETV-QLLGGPCFNKTSLLLWFNAIKEISEELWFERNQRVFHDHDRSLGWL 60
           + W F       + Q+L G    +   L+W N  K +  ++WFE NQR+F    + + W 
Sbjct: 605 VDWAFDGSFNSNIKQILLGSSLKEGPRLIWGNMSKALLSDIWFECNQRIFRG--KVMHWS 664

Query: 61  DCYEVANRNVSSWCILSKEIDSYSTSEFN 88
           +  ++A RN ++WC+L+KE   YS  + +
Sbjct: 665 ERLDIAKRNAATWCMLNKEFIDYSIQDLS 691

[Close]

BLAST of CsGy3G019155 vs. NCBI nr
Match: TYK21876.1 (hypothetical protein E5676_scaffold494G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 1.20e-08
Identity = 31/85 (36.47%), Postives = 43/85 (50.59%), Query Frame = 0


Query: 3   WVFSDECRETV-QLLGGPCFNKTSLLLWFNAIKEISEELWFERNQRVFHDHDRSLGWLDC 62
           W F      +V QLL G    KT  ++W    K +  E+W ERNQR+FHD  R     + 
Sbjct: 292 WNFDSSLSASVIQLLSGSNLPKTPRIIWEILSKALLIEIWIERNQRIFHDKARQRA--EI 351

Query: 63  YEVANRNVSSWCILSKEIDSYSTSE 86
              A+ N ++WC L KE  +YS  +
Sbjct: 352 MHAADLNAAAWCSLRKEFVNYSIQD 374

[Close]

BLAST of CsGy3G019155 vs. NCBI nr
Match: KAA0035739.1 (hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 1.24e-08
Identity = 31/85 (36.47%), Postives = 43/85 (50.59%), Query Frame = 0


Query: 3   WVFSDECRETV-QLLGGPCFNKTSLLLWFNAIKEISEELWFERNQRVFHDHDRSLGWLDC 62
           W F      +V QLL G    KT  ++W    K +  E+W ERNQR+FHD  R     + 
Sbjct: 292 WNFDSSLSASVIQLLSGSNLPKTPRIIWEILSKALLIEIWIERNQRIFHDKARQRA--EI 351

Query: 63  YEVANRNVSSWCILSKEIDSYSTSE 86
              A+ N ++WC L KE  +YS  +
Sbjct: 352 MHAADLNAAAWCSLRKEFVNYSIQD 374

[Close]

BLAST of CsGy3G019155 vs. ExPASy TrEMBL
Match: A0A5A7TN98 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00510 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.25e-10
Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 18  GPCFNKTSLLLWFNAIKEISEELWFERNQRVFHDHDRSLGWLDCYEVANRNVSSWCILSK 77
           GP  +K   +LW N  K +  E+WFER  R+FHD  R  GW +  + A RNV++WC L+K
Sbjct: 161 GPVLSKIRRVLWENMSKAMLAEIWFERKHRIFHDKTR--GWTETVDTAKRNVATWCSLNK 220

Query: 78  EID 80
             D
Sbjct: 221 RED 221

[Close]

BLAST of CsGy3G019155 vs. ExPASy TrEMBL
Match: A0A5A7V5N8 (GPI-anchor transamidase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00520 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 9.56e-10
Identity = 27/89 (30.34%), Postives = 47/89 (52.81%), Query Frame = 0


Query: 1   MSWVFSDECRETV-QLLGGPCFNKTSLLLWFNAIKEISEELWFERNQRVFHDHDRSLGWL 60
           + W F       + Q+L G    +   L+W N  K +  ++WFE NQR+F    + + W 
Sbjct: 605 VDWAFDGSFNSNIKQILLGSSLKEGPRLIWGNMSKALLSDIWFECNQRIFRG--KVMHWS 664

Query: 61  DCYEVANRNVSSWCILSKEIDSYSTSEFN 88
           +  ++A RN ++WC+L+KE   YS  + +
Sbjct: 665 ERLDIAKRNAATWCMLNKEFIDYSIQDLS 691

[Close]

BLAST of CsGy3G019155 vs. ExPASy TrEMBL
Match: A0A5D3DE60 (zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00090 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.81e-09
Identity = 31/85 (36.47%), Postives = 43/85 (50.59%), Query Frame = 0


Query: 3   WVFSDECRETV-QLLGGPCFNKTSLLLWFNAIKEISEELWFERNQRVFHDHDRSLGWLDC 62
           W F      +V QLL G    KT  ++W    K +  E+W ERNQR+FHD  R     + 
Sbjct: 292 WNFDSSLSASVIQLLSGSNLPKTPRIIWEILSKALLIEIWIERNQRIFHDKARQRA--EI 351

Query: 63  YEVANRNVSSWCILSKEIDSYSTSE 86
              A+ N ++WC L KE  +YS  +
Sbjct: 352 MHAADLNAAAWCSLRKEFVNYSIQD 374

[Close]

BLAST of CsGy3G019155 vs. ExPASy TrEMBL
Match: A0A5A7T2Y0 (zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00100 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.99e-09
Identity = 31/85 (36.47%), Postives = 43/85 (50.59%), Query Frame = 0


Query: 3   WVFSDECRETV-QLLGGPCFNKTSLLLWFNAIKEISEELWFERNQRVFHDHDRSLGWLDC 62
           W F      +V QLL G    KT  ++W    K +  E+W ERNQR+FHD  R     + 
Sbjct: 292 WNFDSSLSASVIQLLSGSNLPKTPRIIWEILSKALLIEIWIERNQRIFHDKARQRA--EI 351

Query: 63  YEVANRNVSSWCILSKEIDSYSTSE 86
              A+ N ++WC L KE  +YS  +
Sbjct: 352 MHAADLNAAAWCSLRKEFVNYSIQD 374

[Close]

BLAST of CsGy3G019155 vs. ExPASy TrEMBL
Match: A0A5D3E2I0 (PPM-type phosphatase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00820 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.47e-08
Identity = 30/82 (36.59%), Postives = 43/82 (52.44%), Query Frame = 0


Query: 7   DECR--ETVQLLGGPCFNKTSLLLWFNAIKEISEELWFERNQRVFHDHDRSLGWLDCYEV 66
           DE R   T  L GG  + K +     N +K +  E+WFE NQR+FH   +  G  +  + 
Sbjct: 502 DESRIAATEVLKGGVGYVKATAFNIENMVKALPAEIWFECNQRIFH---KGKGLSEVVDT 561

Query: 67  ANRNVSSWCILSKEIDSYSTSE 86
           A RN ++WC L KE + YS  +
Sbjct: 562 AKRNAAAWCSLDKEFNDYSIQD 580

The following BLAST results are available for this feature:

BLAST of CsGy3G019155 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G019155 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903695.1	1.91e-14	43.37	uncharacterized protein LOC120090219 [Benincasa hispida]	[more]
KAA0043277.1	2.58e-10	44.44	hypothetical protein E6C27_scaffold110G001660 [Cucumis melo var. makuwa] >TYK293...	[more]
KAA0062564.1	1.97e-09	30.34	GPI-anchor transamidase isoform X1 [Cucumis melo var. makuwa]	[more]
TYK21876.1	1.20e-08	36.47	hypothetical protein E5676_scaffold494G00090 [Cucumis melo var. makuwa]	[more]
KAA0035739.1	1.24e-08	36.47	hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa]	[more]

BLAST of CsGy3G019155 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TN98	1.25e-10	44.44	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V5N8	9.56e-10	30.34	GPI-anchor transamidase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A5D3DE60	5.81e-09	36.47	zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5A7T2Y0	5.99e-09	36.47	zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5D3E2I0	5.47e-08	36.59	PPM-type phosphatase domain-containing protein OS=Cucumis melo var. makuwa OX=11...	[more]

BLAST of CsGy3G019155 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G019155.1	CsGy3G019155.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0016787	hydrolase activity