CsaV3_2G034510.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G034510.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2: 22882425 .. 22882685 (+)
Sequence length	243
RNA-Seq Expression	CsaV3_2G034510.1
Synteny	CsaV3_2G034510.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAAGATTGGATGAGATGGAGGAGATGTTGAAGGAAATGGAGGAGATTTGAGATCAAATGAGACGGAGGAACTAAGATCTGAGATCGGCCTAACAGAGGAGAGACAGAGGAGATGTGGGAGGAGAGACTACAAAGACGAAGGAGGAGTGAGGGAGCTGAGACGAAGGAAACATCGAAGACGTTGCAGTGTGCAAGGGAAAGCTAGAGGTGAATTGCATGACAACGTGAGGATAAGATTTTCGTGTGACAACGTGTGA

mRNA sequence

GATGGAGGAGATGTTGAAGGAAATGGAGGAGATTTGAGATCAAATGAGACGGAGGAACTAAGATCTGAGATCGGCCTAACAGAGGAGAGACAGAGGAGATGTGGGAGGAGAGACTACAAAGACGAAGGAGGAGTGAGGGAGCTGAGACGAAGGAAACATCGAAGACGTTGCAGTGTGCAAGGGAAAGCTAGAGGTGAATTGCATGACAACGTGAGGATAAGATTTTCGTGTGACAACGTGTGA

Coding sequence (CDS)

GATGGAGGAGATGTTGAAGGAAATGGAGGAGATTTGAGATCAAATGAGACGGAGGAACTAAGATCTGAGATCGGCCTAACAGAGGAGAGACAGAGGAGATGTGGGAGGAGAGACTACAAAGACGAAGGAGGAGTGAGGGAGCTGAGACGAAGGAAACATCGAAGACGTTGCAGTGTGCAAGGGAAAGCTAGAGGTGAATTGCATGACAACGTGAGGATAAGATTTTCGTGTGACAACGTGTGA

Protein sequence

DGGDVEGNGGDLRSNETEELRSEIGLTEERQRRCGRRDYKDEGGVRELRRRKHRRRCSVQGKARGELHDNVRIRFSCDNV*

Homology

[Close]

BLAST of CsaV3_2G034510.1 vs. NCBI nr
Match: KAE8652272.1 (hypothetical protein Csa_023982, partial [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 2.8e-35
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  DGGDVEGNGGDLRSNETEELRSEIGLTEERQRRCGRRDYKDEGGVRELRRRKHRRRCSVQ 60
          DGGDVEGNGGDLRSNETEELRSEIGLTEERQRRCGRRDYKDEGGVRELRRRKHRRRCSVQ
Sbjct: 1  DGGDVEGNGGDLRSNETEELRSEIGLTEERQRRCGRRDYKDEGGVRELRRRKHRRRCSVQ 60

Query: 61 GKARGELHDNVRIRFSCDNV 81
          GKARGELHDNVRIRFSCDNV
Sbjct: 61 GKARGELHDNVRIRFSCDNV 80

[Close]

BLAST of CsaV3_2G034510.1 vs. NCBI nr
Match: KGN45956.1 (hypothetical protein Csa_005118 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-05
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 0


Query: 26 LTEERQRRCGRRDYKDEGGVRELRRRKHRRRCSVQGKARGELHDNVRI 74
          + EER+R+C RRD +DEGG RELRRR+ RR C  +GKA GEL D VRI
Sbjct: 1  MKEERRRQCQRRDKEDEGGERELRRRRRRRCCGAKGKADGELRDGVRI 48

[Close]

BLAST of CsaV3_2G034510.1 vs. ExPASy TrEMBL
Match: A0A0A0KDV4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G038520 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.0e-06
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 0


Query: 26 LTEERQRRCGRRDYKDEGGVRELRRRKHRRRCSVQGKARGELHDNVRI 74
          + EER+R+C RRD +DEGG RELRRR+ RR C  +GKA GEL D VRI
Sbjct: 1  MKEERRRQCQRRDKEDEGGERELRRRRRRRCCGAKGKADGELRDGVRI 48

The following BLAST results are available for this feature:

BLAST of CsaV3_2G034510.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652272.1	2.8e-35	100.00	hypothetical protein Csa_023982, partial [Cucumis sativus]	[more]
KGN45956.1	1.0e-05	64.58	hypothetical protein Csa_005118 [Cucumis sativus]	[more]

BLAST of CsaV3_2G034510.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G034510.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDV4	5.0e-06	64.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G038520 PE=4 SV=1	[more]

BLAST of CsaV3_2G034510.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_2G034510	CsaV3_2G034510	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G034510.1.exon1	CsaV3_2G034510.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G034510.1.cds1	CsaV3_2G034510.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G034510.1	CsaV3_2G034510.1-protein	polypeptide