CsaV3_UNG208660 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_UNG208660
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Ribosomal protein S4
Location	scaffold18_1: 740017 .. 740847 (+)
RNA-Seq Expression	CsaV3_UNG208660
Synteny	CsaV3_UNG208660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACAGAGGAAGAGAACGAACTTCTTATATCCCTTTTCCACTCAATCCAGAAACAAGATCGGACGTTATTCCGGTTCGTCTCCATTTTAGTTCAACTATTCCTCAAGCAAGGCAGCCGATAAGTCATCGAAGGGTTTGTGTGAATAAAGGAATGGTCAAAATTACTCATTTTCAAGTGTCCCACGGTGATCTAATATCTTTTCAAGAAAATGAGGCGAGAATCCGCGGTTCAGAAATAAGGAGATCTTTCTATAAAGAAATATCAGTTGACAAAATCATAGGCAAATTCCTGGATCACCCGGTAAGAATGTGGAGAAGAAATAAAAGAGAATGGTTCCACCTACTCAAAACTAAGAGGGGATGCCGCCTACTACGAAAATCCCGGTTTTTGCAAGAGTTGCGTTCTTCTATGCAAGAAGAAGACTTAGAAAGAACAAAGAAGTTTGGATCGGAAAAAGTATGCTTAGGCAGTTCCTTCGCTGAGCACAAGAGAATGAAGAGGAATTTGTATCATTTTCAATCCCTATTCTTATCGAATAGAAGGAAGGAGAAAAACCTCAATCTTCCTACTCGAAGAAGAAGTCCTATAGAAAACAACTCTTCTTTCTATAGTAATTCGACCTATTGCTCCGCATCCCCCCATCAGTTTACTATGAAGAGCAAAATCAAAAGTCTCTCACTACCTACTCATTATTCGGAGGTGAATCATAGAACACTAAAAGCTGTGGTATCTTATGGACCTAACATAGGTCACATCCCTCACGACATAAGATTGAAAGATCCAAACCTTCCTCTTCGGAGCGGAAACGGACGTGGCCAAAACATATAA

mRNA sequence

ATGCACAGAGGAAGAGAACGAACTTCTTATATCCCTTTTCCACTCAATCCAGAAACAAGATCGGACGTTATTCCGGTTCGTCTCCATTTTAGTTCAACTATTCCTCAAGCAAGGCAGCCGATAAGTCATCGAAGGGTTTGTGTGAATAAAGGAATGGTCAAAATTACTCATTTTCAAGTGTCCCACGGTGATCTAATATCTTTTCAAGAAAATGAGGCGAGAATCCGCGGTTCAGAAATAAGGAGATCTTTCTATAAAGAAATATCAGTTGACAAAATCATAGGCAAATTCCTGGATCACCCGGTAAGAATGTGGAGAAGAAATAAAAGAGAATGGTTCCACCTACTCAAAACTAAGAGGGGATGCCGCCTACTACGAAAATCCCGGTTTTTGCAAGAGTTGCGTTCTTCTATGCAAGAAGAAGACTTAGAAAGAACAAAGAAGTTTGGATCGGAAAAAGTATGCTTAGGCAGTTCCTTCGCTGAGCACAAGAGAATGAAGAGGAATTTGTATCATTTTCAATCCCTATTCTTATCGAATAGAAGGAAGGAGAAAAACCTCAATCTTCCTACTCGAAGAAGAAGTCCTATAGAAAACAACTCTTCTTTCTATAGTAATTCGACCTATTGCTCCGCATCCCCCCATCAGTTTACTATGAAGAGCAAAATCAAAAGTCTCTCACTACCTACTCATTATTCGGAGGTGAATCATAGAACACTAAAAGCTGTGGTATCTTATGGACCTAACATAGGTCACATCCCTCACGACATAAGATTGAAAGATCCAAACCTTCCTCTTCGGAGCGGAAACGGACGTGGCCAAAACATATAA

Coding sequence (CDS)

ATGCACAGAGGAAGAGAACGAACTTCTTATATCCCTTTTCCACTCAATCCAGAAACAAGATCGGACGTTATTCCGGTTCGTCTCCATTTTAGTTCAACTATTCCTCAAGCAAGGCAGCCGATAAGTCATCGAAGGGTTTGTGTGAATAAAGGAATGGTCAAAATTACTCATTTTCAAGTGTCCCACGGTGATCTAATATCTTTTCAAGAAAATGAGGCGAGAATCCGCGGTTCAGAAATAAGGAGATCTTTCTATAAAGAAATATCAGTTGACAAAATCATAGGCAAATTCCTGGATCACCCGGTAAGAATGTGGAGAAGAAATAAAAGAGAATGGTTCCACCTACTCAAAACTAAGAGGGGATGCCGCCTACTACGAAAATCCCGGTTTTTGCAAGAGTTGCGTTCTTCTATGCAAGAAGAAGACTTAGAAAGAACAAAGAAGTTTGGATCGGAAAAAGTATGCTTAGGCAGTTCCTTCGCTGAGCACAAGAGAATGAAGAGGAATTTGTATCATTTTCAATCCCTATTCTTATCGAATAGAAGGAAGGAGAAAAACCTCAATCTTCCTACTCGAAGAAGAAGTCCTATAGAAAACAACTCTTCTTTCTATAGTAATTCGACCTATTGCTCCGCATCCCCCCATCAGTTTACTATGAAGAGCAAAATCAAAAGTCTCTCACTACCTACTCATTATTCGGAGGTGAATCATAGAACACTAAAAGCTGTGGTATCTTATGGACCTAACATAGGTCACATCCCTCACGACATAAGATTGAAAGATCCAAACCTTCCTCTTCGGAGCGGAAACGGACGTGGCCAAAACATATAA

Protein sequence

MHRGRERTSYIPFPLNPETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQVSHGDLISFQENEARIRGSEIRRSFYKEISVDKIIGKFLDHPVRMWRRNKREWFHLLKTKRGCRLLRKSRFLQELRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRRKEKNLNLPTRRRSPIENNSSFYSNSTYCSASPHQFTMKSKIKSLSLPTHYSEVNHRTLKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI*

Homology

[Close]

BLAST of CsaV3_UNG208660 vs. NCBI nr
Match: YP_004849334.1 (ribosomal protein S4 [Cucumis sativus] >ADZ10761.1 ribosomal protein S4 [Cucumis sativus])

HSP 1 Score: 557.0 bits (1434), Expect = 9.2e-155
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0


Query: 1   MHRGRERTSYIPFPLNPETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQV 60
           MHRGRERTSYIPFPLNPETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQV
Sbjct: 85  MHRGRERTSYIPFPLNPETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQV 144

Query: 61  SHGDLISFQENEARIRGSEIRRSFYKEISVDKIIGKFLDHPVRMWRRNKREWFHLLKTKR 120
           SHGDLISFQENEARIRGSEIRRSFYKEISVDKIIGKFLDHPVRMWRRNKREWFHLLKTKR
Sbjct: 145 SHGDLISFQENEARIRGSEIRRSFYKEISVDKIIGKFLDHPVRMWRRNKREWFHLLKTKR 204

Query: 121 GCRLLRKSRFLQELRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSN 180
           GCRLLRKSRFLQELRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSN
Sbjct: 205 GCRLLRKSRFLQELRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSN 264

Query: 181 RRKEKNLNLPTRRRSPIENNSSFYSNSTYCSASPHQFTMKSKIKSLSLPTHYSEVNHRTL 240
           RRKEKNLNLPTRRRSPIENNSSFYSNSTYCSASPHQFTMKSKIKSLSLPTHYSEVNHRTL
Sbjct: 265 RRKEKNLNLPTRRRSPIENNSSFYSNSTYCSASPHQFTMKSKIKSLSLPTHYSEVNHRTL 324

Query: 241 KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 277
           KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI
Sbjct: 325 KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 360

[Close]

BLAST of CsaV3_UNG208660 vs. NCBI nr
Match: AEN56127.1 (ribosomal protein S4 [Cucumis melo subsp. melo] >AZP40284.1 ribosomal protein S4 [Cucumis melo var. momordica])

HSP 1 Score: 543.5 bits (1399), Expect = 1.1e-150
Identity = 270/276 (97.83%), Postives = 272/276 (98.55%), Query Frame = 0


Query: 1   MHRGRERTSYIPFPLNPETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQV 60
           MHRGRERTSYIPFPLNPETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQV
Sbjct: 104 MHRGRERTSYIPFPLNPETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQV 163

Query: 61  SHGDLISFQENEARIRGSEIRRSFYKEISVDKIIGKFLDHPVRMWRRNKREWFHLLKTKR 120
           SHGDLISFQENEAR  GSEIRRSFY EISVDKIIGKFLDHPVRMWRRN+REWFHLLKT+R
Sbjct: 164 SHGDLISFQENEARRSGSEIRRSFYIEISVDKIIGKFLDHPVRMWRRNQREWFHLLKTQR 223

Query: 121 GCRLLRKSRFLQELRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSN 180
           GCRLLRKSRFLQELRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSN
Sbjct: 224 GCRLLRKSRFLQELRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSN 283

Query: 181 RRKEKNLNLPTRRRSPIENNSSFYSNSTYCSASPHQFTMKSKIKSLSLPTHYSEVNHRTL 240
           RRKEKNLNLPTRRRSPIENNSS YSNSTYCSASPHQFTMKSKIKSLSLPTHYSEVNHRTL
Sbjct: 284 RRKEKNLNLPTRRRSPIENNSSLYSNSTYCSASPHQFTMKSKIKSLSLPTHYSEVNHRTL 343

Query: 241 KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 277
           KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI
Sbjct: 344 KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 379

[Close]

BLAST of CsaV3_UNG208660 vs. NCBI nr
Match: KAA0032616.1 (ribosomal protein S4 [Cucumis melo var. makuwa])

HSP 1 Score: 543.5 bits (1399), Expect = 1.1e-150
Identity = 270/276 (97.83%), Postives = 272/276 (98.55%), Query Frame = 0


Query: 1   MHRGRERTSYIPFPLNPETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQV 60
           MHRGRERTSYIPFPLNPETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQV
Sbjct: 147 MHRGRERTSYIPFPLNPETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQV 206

Query: 61  SHGDLISFQENEARIRGSEIRRSFYKEISVDKIIGKFLDHPVRMWRRNKREWFHLLKTKR 120
           SHGDLISFQENEAR  GSEIRRSFY EISVDKIIGKFLDHPVRMWRRN+REWFHLLKT+R
Sbjct: 207 SHGDLISFQENEARRSGSEIRRSFYIEISVDKIIGKFLDHPVRMWRRNQREWFHLLKTQR 266

Query: 121 GCRLLRKSRFLQELRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSN 180
           GCRLLRKSRFLQELRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSN
Sbjct: 267 GCRLLRKSRFLQELRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSN 326

Query: 181 RRKEKNLNLPTRRRSPIENNSSFYSNSTYCSASPHQFTMKSKIKSLSLPTHYSEVNHRTL 240
           RRKEKNLNLPTRRRSPIENNSS YSNSTYCSASPHQFTMKSKIKSLSLPTHYSEVNHRTL
Sbjct: 327 RRKEKNLNLPTRRRSPIENNSSLYSNSTYCSASPHQFTMKSKIKSLSLPTHYSEVNHRTL 386

Query: 241 KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 277
           KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI
Sbjct: 387 KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 422

[Close]

BLAST of CsaV3_UNG208660 vs. NCBI nr
Match: YP_009913620.1 (ribosomal protein S4 [Luffa acutangula] >QLJ93050.1 ribosomal protein S4 [Luffa acutangula])

HSP 1 Score: 506.9 bits (1304), Expect = 1.1e-139
Identity = 251/276 (90.94%), Postives = 257/276 (93.12%), Query Frame = 0


Query: 1   MHRGRERTSYIPFPLNPETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQV 60
           MHRG ERTSYIPFPLNPETRSDVIPVRLHFS TIPQARQPISHRRVCVNKGMV ITHF+V
Sbjct: 80  MHRGTERTSYIPFPLNPETRSDVIPVRLHFSETIPQARQPISHRRVCVNKGMVSITHFKV 139

Query: 61  SHGDLISFQENEARIRGSEIRRSFYKEISVDKIIGKFLDHPVRMWRRNKREWFHLLKTKR 120
           SHGD ISFQEN+ARIRG EIRRSFY EISV+KIIGKFLDHPVRMWRR K EWFHLLKTKR
Sbjct: 140 SHGDRISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDHPVRMWRRTKTEWFHLLKTKR 199

Query: 121 GCRLLRKSRFLQELRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSN 180
           GCRLL KSRFLQ+LRSSMQEEDLERTKKFGSEKVCLGSSFAEH RMKRNLYH +SLFLSN
Sbjct: 200 GCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHLKSLFLSN 259

Query: 181 RRKEKNLNLPTRRRSPIENNSSFYSNSTYCSASPHQFTMKSKIKSLSLPTHYSEVNHRTL 240
           RR EKN NLPTR RSPI  NSS YSNSTYCSASPHQFTMKSKIK + LPTHYSEVNHRTL
Sbjct: 260 RRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEVNHRTL 319

Query: 241 KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 277
           KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI
Sbjct: 320 KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 355

[Close]

BLAST of CsaV3_UNG208660 vs. NCBI nr
Match: WP_131747055.1 (hypothetical protein [Candidatus Frankia meridionalis])

HSP 1 Score: 506.1 bits (1302), Expect = 1.9e-139
Identity = 250/276 (90.58%), Postives = 256/276 (92.75%), Query Frame = 0


Query: 1   MHRGRERTSYIPFPLNPETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQV 60
           MHRG ERTSYIPFPLNPETRSDVIPVRLHF  TIPQARQPISHRRVCVNKGMV ITHF+V
Sbjct: 130 MHRGTERTSYIPFPLNPETRSDVIPVRLHFCETIPQARQPISHRRVCVNKGMVSITHFKV 189

Query: 61  SHGDLISFQENEARIRGSEIRRSFYKEISVDKIIGKFLDHPVRMWRRNKREWFHLLKTKR 120
           SHGDLISFQEN+ARIRG EIRRSFY EISV+KIIGKFLDHPVRMWRR K EWFHLLKTKR
Sbjct: 190 SHGDLISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDHPVRMWRRTKTEWFHLLKTKR 249

Query: 121 GCRLLRKSRFLQELRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSN 180
           GCRLL KSRFLQ+LRSSMQEEDLERTKKFGSEKVCLGSSFAEH RMKRN YHF+SLFLSN
Sbjct: 250 GCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNFYHFKSLFLSN 309

Query: 181 RRKEKNLNLPTRRRSPIENNSSFYSNSTYCSASPHQFTMKSKIKSLSLPTHYSEVNHRTL 240
           RR EKN NLPTR RSPI  NSS YSNSTYCSASPHQFTMK KIK + LPTHYSEVNHRTL
Sbjct: 310 RRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTL 369

Query: 241 KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 277
           KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI
Sbjct: 370 KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 405

[Close]

BLAST of CsaV3_UNG208660 vs. ExPASy Swiss-Prot
Match: Q31708 (Ribosomal protein S4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS4 PE=1 SV=2)

HSP 1 Score: 425.2 bits (1092), Expect = 5.5e-118
Identity = 222/278 (79.86%), Postives = 238/278 (85.61%), Query Frame = 0


Query: 1   MHRGRERTSYIPFPLNPETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQV 60
           MHRG +RTSYIPF LN ETR DVIP+RL+F  TIPQARQ ISHRRVCVNKGMV ITHF++
Sbjct: 87  MHRGTKRTSYIPFLLNLETRFDVIPLRLYFLETIPQARQLISHRRVCVNKGMVSITHFKL 146

Query: 61  SHGDLISFQENEARIRGSEIRRSFYKEISVDKIIGKFLDHPVRMWRRNKREWFHLLKTKR 120
           SHGD+ISFQEN A IRG EIRRSFYKEI V+KIIGK L  P+RMWRR+K EWFHLLKTKR
Sbjct: 147 SHGDIISFQENNAIIRGEEIRRSFYKEILVEKIIGKLLHQPLRMWRRSKTEWFHLLKTKR 206

Query: 121 GCRLLRKSRFLQELRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSN 180
           GCRLL KSRFLQ+LRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNL   +SLFLS 
Sbjct: 207 GCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNL--LKSLFLSK 266

Query: 181 RRKEKNLNLPTRRRSPIENNS--SFYSNSTYCSASPHQFTMKSKIKSLSLPTHYSEVNHR 240
           RRK+KNLNLPTR  SPI  NS  S YSNSTYC ASPH+ TMK +IK + LPTHY EVN+R
Sbjct: 267 RRKDKNLNLPTRTISPIVYNSSLSLYSNSTYCFASPHKLTMKRRIKRIELPTHYLEVNYR 326

Query: 241 TLKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 277
           T KAVV YGPNIGHIPHDIRLKD NL L S NGRGQNI
Sbjct: 327 TPKAVVFYGPNIGHIPHDIRLKDLNLLLWSRNGRGQNI 362

[Close]

BLAST of CsaV3_UNG208660 vs. ExPASy Swiss-Prot
Match: P26866 (Ribosomal protein S4, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPS4 PE=3 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 6.9e-12
Identity = 40/69 (57.97%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 16  NPETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQVSHGDLISFQENEARI 75
           N E R DVI VRL+F ST+ QARQ ISH+ +CVN   V I  FQVS+GDLIS QEN    
Sbjct: 85  NIEKRLDVILVRLNFCSTMFQARQLISHKNICVNYKKVNIPGFQVSNGDLISIQENSLDF 144

Query: 76  RGSEIRRSF 85
             S IR++F
Sbjct: 145 FKSNIRKNF 153

[Close]

BLAST of CsaV3_UNG208660 vs. ExPASy Swiss-Prot
Match: Q2S936 (30S ribosomal protein S4 OS=Hahella chejuensis (strain KCTC 2396) OX=349521 GN=rpsD PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.5e-06
Identity = 36/94 (38.30%), Postives = 52/94 (55.32%), Query Frame = 0


Query: 18  ETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQVSHGDLISFQE---NEAR 77
           E R D +  R+ F ST  +ARQ +SH+ + VN   V I  +QV  GD++S +E   N+ R
Sbjct: 95  ERRLDNVVYRMGFGSTRSEARQLVSHKAILVNGKAVNIPSYQVKPGDVVSIREKSKNQLR 154

Query: 78  IRGS---EIRRSFYKEISVD--KIIGKFLDHPVR 104
           I+GS     +R+  + I VD  K+ G F   P R
Sbjct: 155 IKGSLELAAQRATLEWIEVDAAKMSGTFKSVPER 188

[Close]

BLAST of CsaV3_UNG208660 vs. ExPASy Swiss-Prot
Match: Q5F5V1 (30S ribosomal protein S4 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) OX=242231 GN=rpsD PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.7e-06
Identity = 32/94 (34.04%), Postives = 49/94 (52.13%), Query Frame = 0


Query: 18  ETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQVSHGDLISFQE------- 77
           E+R D +  R+ F ST  +ARQ +SH+ + VN  +V I  FQV  GD++S +E       
Sbjct: 95  ESRLDNVVYRMGFGSTRAEARQLVSHKAIVVNGQVVNIPSFQVKAGDVVSVREKAKKQVR 154

Query: 78  -NEARIRGSEIRRSFYKEISVDKIIGKFLDHPVR 104
             EA    ++I    +  +  DK+ G F + P R
Sbjct: 155 IQEALGLATQIGLPGWVSVDADKLEGVFKNMPDR 188

[Close]

BLAST of CsaV3_UNG208660 vs. ExPASy Swiss-Prot
Match: A9M3U1 (30S ribosomal protein S4 OS=Neisseria meningitidis serogroup C (strain 053442) OX=374833 GN=rpsD PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.7e-06
Identity = 32/94 (34.04%), Postives = 49/94 (52.13%), Query Frame = 0


Query: 18  ETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQVSHGDLISFQE------- 77
           E+R D +  R+ F ST  +ARQ +SH+ + VN  +V I  FQV  GD++S +E       
Sbjct: 95  ESRLDNVVYRMGFGSTRAEARQLVSHKAIVVNGQVVNIPSFQVKAGDVVSVREKAKKQVR 154

Query: 78  -NEARIRGSEIRRSFYKEISVDKIIGKFLDHPVR 104
             EA    ++I    +  +  DK+ G F + P R
Sbjct: 155 IQEALGLATQIGLPGWVSVDADKLEGVFKNMPDR 188

[Close]

BLAST of CsaV3_UNG208660 vs. ExPASy TrEMBL
Match: G3EIY6 (Ribosomal protein S4 OS=Cucumis sativus OX=3659 GN=rps4 PE=3 SV=1)

HSP 1 Score: 557.0 bits (1434), Expect = 4.5e-155
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0


Query: 1   MHRGRERTSYIPFPLNPETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQV 60
           MHRGRERTSYIPFPLNPETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQV
Sbjct: 85  MHRGRERTSYIPFPLNPETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQV 144

Query: 61  SHGDLISFQENEARIRGSEIRRSFYKEISVDKIIGKFLDHPVRMWRRNKREWFHLLKTKR 120
           SHGDLISFQENEARIRGSEIRRSFYKEISVDKIIGKFLDHPVRMWRRNKREWFHLLKTKR
Sbjct: 145 SHGDLISFQENEARIRGSEIRRSFYKEISVDKIIGKFLDHPVRMWRRNKREWFHLLKTKR 204

Query: 121 GCRLLRKSRFLQELRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSN 180
           GCRLLRKSRFLQELRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSN
Sbjct: 205 GCRLLRKSRFLQELRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSN 264

Query: 181 RRKEKNLNLPTRRRSPIENNSSFYSNSTYCSASPHQFTMKSKIKSLSLPTHYSEVNHRTL 240
           RRKEKNLNLPTRRRSPIENNSSFYSNSTYCSASPHQFTMKSKIKSLSLPTHYSEVNHRTL
Sbjct: 265 RRKEKNLNLPTRRRSPIENNSSFYSNSTYCSASPHQFTMKSKIKSLSLPTHYSEVNHRTL 324

Query: 241 KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 277
           KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI
Sbjct: 325 KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 360

[Close]

BLAST of CsaV3_UNG208660 vs. ExPASy TrEMBL
Match: A0A5A7SRE6 (Ribosomal protein S4 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold45081G00020 PE=3 SV=1)

HSP 1 Score: 543.5 bits (1399), Expect = 5.1e-151
Identity = 270/276 (97.83%), Postives = 272/276 (98.55%), Query Frame = 0


Query: 1   MHRGRERTSYIPFPLNPETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQV 60
           MHRGRERTSYIPFPLNPETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQV
Sbjct: 147 MHRGRERTSYIPFPLNPETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQV 206

Query: 61  SHGDLISFQENEARIRGSEIRRSFYKEISVDKIIGKFLDHPVRMWRRNKREWFHLLKTKR 120
           SHGDLISFQENEAR  GSEIRRSFY EISVDKIIGKFLDHPVRMWRRN+REWFHLLKT+R
Sbjct: 207 SHGDLISFQENEARRSGSEIRRSFYIEISVDKIIGKFLDHPVRMWRRNQREWFHLLKTQR 266

Query: 121 GCRLLRKSRFLQELRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSN 180
           GCRLLRKSRFLQELRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSN
Sbjct: 267 GCRLLRKSRFLQELRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSN 326

Query: 181 RRKEKNLNLPTRRRSPIENNSSFYSNSTYCSASPHQFTMKSKIKSLSLPTHYSEVNHRTL 240
           RRKEKNLNLPTRRRSPIENNSS YSNSTYCSASPHQFTMKSKIKSLSLPTHYSEVNHRTL
Sbjct: 327 RRKEKNLNLPTRRRSPIENNSSLYSNSTYCSASPHQFTMKSKIKSLSLPTHYSEVNHRTL 386

Query: 241 KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 277
           KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI
Sbjct: 387 KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 422

[Close]

BLAST of CsaV3_UNG208660 vs. ExPASy TrEMBL
Match: G3EU07 (Ribosomal protein S4 OS=Cucumis melo subsp. melo OX=412675 GN=rps4 PE=3 SV=1)

HSP 1 Score: 543.5 bits (1399), Expect = 5.1e-151
Identity = 270/276 (97.83%), Postives = 272/276 (98.55%), Query Frame = 0


Query: 1   MHRGRERTSYIPFPLNPETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQV 60
           MHRGRERTSYIPFPLNPETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQV
Sbjct: 104 MHRGRERTSYIPFPLNPETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQV 163

Query: 61  SHGDLISFQENEARIRGSEIRRSFYKEISVDKIIGKFLDHPVRMWRRNKREWFHLLKTKR 120
           SHGDLISFQENEAR  GSEIRRSFY EISVDKIIGKFLDHPVRMWRRN+REWFHLLKT+R
Sbjct: 164 SHGDLISFQENEARRSGSEIRRSFYIEISVDKIIGKFLDHPVRMWRRNQREWFHLLKTQR 223

Query: 121 GCRLLRKSRFLQELRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSN 180
           GCRLLRKSRFLQELRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSN
Sbjct: 224 GCRLLRKSRFLQELRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSN 283

Query: 181 RRKEKNLNLPTRRRSPIENNSSFYSNSTYCSASPHQFTMKSKIKSLSLPTHYSEVNHRTL 240
           RRKEKNLNLPTRRRSPIENNSS YSNSTYCSASPHQFTMKSKIKSLSLPTHYSEVNHRTL
Sbjct: 284 RRKEKNLNLPTRRRSPIENNSSLYSNSTYCSASPHQFTMKSKIKSLSLPTHYSEVNHRTL 343

Query: 241 KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 277
           KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI
Sbjct: 344 KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 379

[Close]

BLAST of CsaV3_UNG208660 vs. ExPASy TrEMBL
Match: A0A3S9JII7 (Ribosomal protein S4 OS=Cucumis melo var. momordica OX=2034244 GN=rps4 PE=3 SV=1)

HSP 1 Score: 543.5 bits (1399), Expect = 5.1e-151
Identity = 270/276 (97.83%), Postives = 272/276 (98.55%), Query Frame = 0


Query: 1   MHRGRERTSYIPFPLNPETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQV 60
           MHRGRERTSYIPFPLNPETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQV
Sbjct: 104 MHRGRERTSYIPFPLNPETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQV 163

Query: 61  SHGDLISFQENEARIRGSEIRRSFYKEISVDKIIGKFLDHPVRMWRRNKREWFHLLKTKR 120
           SHGDLISFQENEAR  GSEIRRSFY EISVDKIIGKFLDHPVRMWRRN+REWFHLLKT+R
Sbjct: 164 SHGDLISFQENEARRSGSEIRRSFYIEISVDKIIGKFLDHPVRMWRRNQREWFHLLKTQR 223

Query: 121 GCRLLRKSRFLQELRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSN 180
           GCRLLRKSRFLQELRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSN
Sbjct: 224 GCRLLRKSRFLQELRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSN 283

Query: 181 RRKEKNLNLPTRRRSPIENNSSFYSNSTYCSASPHQFTMKSKIKSLSLPTHYSEVNHRTL 240
           RRKEKNLNLPTRRRSPIENNSS YSNSTYCSASPHQFTMKSKIKSLSLPTHYSEVNHRTL
Sbjct: 284 RRKEKNLNLPTRRRSPIENNSSLYSNSTYCSASPHQFTMKSKIKSLSLPTHYSEVNHRTL 343

Query: 241 KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 277
           KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI
Sbjct: 344 KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 379

[Close]

BLAST of CsaV3_UNG208660 vs. ExPASy TrEMBL
Match: A0A7D6BZG8 (Ribosomal protein S4 OS=Luffa acutangula OX=56866 GN=rps4 PE=3 SV=1)

HSP 1 Score: 506.9 bits (1304), Expect = 5.3e-140
Identity = 251/276 (90.94%), Postives = 257/276 (93.12%), Query Frame = 0


Query: 1   MHRGRERTSYIPFPLNPETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQV 60
           MHRG ERTSYIPFPLNPETRSDVIPVRLHFS TIPQARQPISHRRVCVNKGMV ITHF+V
Sbjct: 80  MHRGTERTSYIPFPLNPETRSDVIPVRLHFSETIPQARQPISHRRVCVNKGMVSITHFKV 139

Query: 61  SHGDLISFQENEARIRGSEIRRSFYKEISVDKIIGKFLDHPVRMWRRNKREWFHLLKTKR 120
           SHGD ISFQEN+ARIRG EIRRSFY EISV+KIIGKFLDHPVRMWRR K EWFHLLKTKR
Sbjct: 140 SHGDRISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDHPVRMWRRTKTEWFHLLKTKR 199

Query: 121 GCRLLRKSRFLQELRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSN 180
           GCRLL KSRFLQ+LRSSMQEEDLERTKKFGSEKVCLGSSFAEH RMKRNLYH +SLFLSN
Sbjct: 200 GCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHLKSLFLSN 259

Query: 181 RRKEKNLNLPTRRRSPIENNSSFYSNSTYCSASPHQFTMKSKIKSLSLPTHYSEVNHRTL 240
           RR EKN NLPTR RSPI  NSS YSNSTYCSASPHQFTMKSKIK + LPTHYSEVNHRTL
Sbjct: 260 RRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEVNHRTL 319

Query: 241 KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 277
           KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI
Sbjct: 320 KAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 355

[Close]

BLAST of CsaV3_UNG208660 vs. TAIR 10
Match: AT2G07734.1 (Alpha-L RNA-binding motif/Ribosomal protein S4 family protein )

HSP 1 Score: 459.1 bits (1180), Expect = 2.4e-129
Identity = 233/278 (83.81%), Postives = 247/278 (88.85%), Query Frame = 0


Query: 1   MHRGRERTSYIPFPLNPETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQV 60
           MHRG +RTSYIPFPLNPETR DVIP+RLHF  TIPQARQPISHRRVCVNKGMV ITHF++
Sbjct: 87  MHRGTKRTSYIPFPLNPETRFDVIPLRLHFLETIPQARQPISHRRVCVNKGMVSITHFKL 146

Query: 61  SHGDLISFQENEARIRGSEIRRSFYKEISVDKIIGKFLDHPVRMWRRNKREWFHLLKTKR 120
           SHGD+ISFQEN A IRG EIRRSFYKEISV+KIIGK L  P+RMWRR+K EWFHLLKTKR
Sbjct: 147 SHGDIISFQENNAIIRGEEIRRSFYKEISVEKIIGKLLHQPLRMWRRSKTEWFHLLKTKR 206

Query: 121 GCRLLRKSRFLQELRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSN 180
           GCRLL KSRFLQ+LRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNL   +SLFLS 
Sbjct: 207 GCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNL--LKSLFLSK 266

Query: 181 RRKEKNLNLPTRRRSPIENNS--SFYSNSTYCSASPHQFTMKSKIKSLSLPTHYSEVNHR 240
           RRK+KNLNLPTR  SPI  NS  S YSNSTYC ASPH+ TMK +IK + LPTHYSEVNHR
Sbjct: 267 RRKDKNLNLPTRTISPIVYNSSLSLYSNSTYCFASPHKLTMKRRIKRIELPTHYSEVNHR 326

Query: 241 TLKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 277
           T KAVVSYGPNIGHIPHDIRLKDPNLPLRS NGRGQNI
Sbjct: 327 TPKAVVSYGPNIGHIPHDIRLKDPNLPLRSRNGRGQNI 362

[Close]

BLAST of CsaV3_UNG208660 vs. TAIR 10
Match: ATMG00290.1 (mitochondrial ribosomal protein S4 )

HSP 1 Score: 459.1 bits (1180), Expect = 2.4e-129
Identity = 233/278 (83.81%), Postives = 247/278 (88.85%), Query Frame = 0


Query: 1   MHRGRERTSYIPFPLNPETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQV 60
           MHRG +RTSYIPFPLNPETR DVIP+RLHF  TIPQARQPISHRRVCVNKGMV ITHF++
Sbjct: 87  MHRGTKRTSYIPFPLNPETRFDVIPLRLHFLETIPQARQPISHRRVCVNKGMVSITHFKL 146

Query: 61  SHGDLISFQENEARIRGSEIRRSFYKEISVDKIIGKFLDHPVRMWRRNKREWFHLLKTKR 120
           SHGD+ISFQEN A IRG EIRRSFYKEISV+KIIGK L  P+RMWRR+K EWFHLLKTKR
Sbjct: 147 SHGDIISFQENNAIIRGEEIRRSFYKEISVEKIIGKLLHQPLRMWRRSKTEWFHLLKTKR 206

Query: 121 GCRLLRKSRFLQELRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSN 180
           GCRLL KSRFLQ+LRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNL   +SLFLS 
Sbjct: 207 GCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNL--LKSLFLSK 266

Query: 181 RRKEKNLNLPTRRRSPIENNS--SFYSNSTYCSASPHQFTMKSKIKSLSLPTHYSEVNHR 240
           RRK+KNLNLPTR  SPI  NS  S YSNSTYC ASPH+ TMK +IK + LPTHYSEVNHR
Sbjct: 267 RRKDKNLNLPTRTISPIVYNSSLSLYSNSTYCFASPHKLTMKRRIKRIELPTHYSEVNHR 326

Query: 241 TLKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 277
           T KAVVSYGPNIGHIPHDIRLKDPNLPLRS NGRGQNI
Sbjct: 327 TPKAVVSYGPNIGHIPHDIRLKDPNLPLRSRNGRGQNI 362

The following BLAST results are available for this feature:

BLAST of CsaV3_UNG208660 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_004849334.1	9.2e-155	100.00	ribosomal protein S4 [Cucumis sativus] >ADZ10761.1 ribosomal protein S4 [Cucumis...	[more]
AEN56127.1	1.1e-150	97.83	ribosomal protein S4 [Cucumis melo subsp. melo] >AZP40284.1 ribosomal protein S4...	[more]
KAA0032616.1	1.1e-150	97.83	ribosomal protein S4 [Cucumis melo var. makuwa]	[more]
YP_009913620.1	1.1e-139	90.94	ribosomal protein S4 [Luffa acutangula] >QLJ93050.1 ribosomal protein S4 [Luffa ...	[more]
WP_131747055.1	1.9e-139	90.58	hypothetical protein [Candidatus Frankia meridionalis]	[more]

BLAST of CsaV3_UNG208660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q31708	5.5e-118	79.86	Ribosomal protein S4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS4 PE=1...	[more]
P26866	6.9e-12	57.97	Ribosomal protein S4, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPS4 PE=...	[more]
Q2S936	2.5e-06	38.30	30S ribosomal protein S4 OS=Hahella chejuensis (strain KCTC 2396) OX=349521 GN=r...	[more]
Q5F5V1	9.7e-06	34.04	30S ribosomal protein S4 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)...	[more]
A9M3U1	9.7e-06	34.04	30S ribosomal protein S4 OS=Neisseria meningitidis serogroup C (strain 053442) O...	[more]

BLAST of CsaV3_UNG208660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
G3EIY6	4.5e-155	100.00	Ribosomal protein S4 OS=Cucumis sativus OX=3659 GN=rps4 PE=3 SV=1	[more]
A0A5A7SRE6	5.1e-151	97.83	Ribosomal protein S4 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
G3EU07	5.1e-151	97.83	Ribosomal protein S4 OS=Cucumis melo subsp. melo OX=412675 GN=rps4 PE=3 SV=1	[more]
A0A3S9JII7	5.1e-151	97.83	Ribosomal protein S4 OS=Cucumis melo var. momordica OX=2034244 GN=rps4 PE=3 SV=1	[more]
A0A7D6BZG8	5.3e-140	90.94	Ribosomal protein S4 OS=Luffa acutangula OX=56866 GN=rps4 PE=3 SV=1	[more]

BLAST of CsaV3_UNG208660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07734.1	2.4e-129	83.81	Alpha-L RNA-binding motif/Ribosomal protein S4 family protein	[more]
ATMG00290.1	2.4e-129	83.81	mitochondrial ribosomal protein S4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 19..81 e-value: 1.0E-5 score: 35.0
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 22..66 e-value: 2.4E-9 score: 36.8
IPR002942	RNA-binding S4 domain	CDD	cd00165	S4	coord: 20..72 e-value: 2.30875E-10 score: 53.7926
IPR036986	RNA-binding S4 domain superfamily	GENE3D	3.10.290.10		coord: 18..111 e-value: 3.6E-14 score: 54.9
IPR022801	Ribosomal protein S4/S9	PANTHER	PTHR11831	30S 40S RIBOSOMAL PROTEIN	coord: 1..204
None	No IPR available	PANTHER	PTHR11831:SF30	RIBOSOMAL PROTEIN S4-RELATED	coord: 1..204
None	No IPR available	PROSITE	PS50889	S4	coord: 22..94 score: 9.561861
None	No IPR available	SUPERFAMILY	55174	Alpha-L RNA-binding motif	coord: 13..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_UNG208660.1	CsaV3_UNG208660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding