CsaV3_4G029160 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AAAATCTCTTCTCCACTAGAGCTTTAGGAAACATCTCTCACCTCAAATGTAACTTTTCTTTCTCTAAAACCTTTAACTTTTCTTATTTTTGCACAAATTAATTGTTGTTCTTATTATATAGTTTTTATTAAAGTATGTCTAACATGTTTTTCTTTCATTCATTATGTTTAGTTTAGTTCCAATGTAATTAACTAGTGGTTAATTAATTCTTCCATAATACCATTTGTTTATTTGAATTGTGCTTTACGTGAATTTTGTTTTCTAATTCTTACCTGCTGCCATTCTTAAATAATCAAATAAATCTTAACAGAGTTTGTTCTTTCAAAATCTTAACAGAAAGTAGTTTAGTTCTATTTTACTTGAAGTTGTTAATTTTGTATATTATATTTTCCTATTAAAGTGTATTGTTGATGCAGTCATCGTTTCAATTCAAATTTCTAGTTGAAGCTTTGTTTGACACCTTCAATGGAATATCAAATCTCTCGATACTCAACTACGGCAGTGGAAGTAGATATAGATGTTCCGAAGTGGACAAAAATCCCGAAGCATCCATCACCAATCGAACTAATTGGCTTGCTCTTCACCCTACGTCGTCGTTGCAACCGCTTTCAGGTGCTGGAGAACGGTGAACGACAATTAGTAGAGGAACAAGAGATATCAAAAGTTCCTCTATGCGACCACCAATTCCCTGTTGAAATATTTAATGGAGACAGCAGTTCTCTATTCCAATACCTCTGTTGTAGCTTCGAAAACTACGAATCTAAAATTGATGCAGAGGTGGTAGCAAGTGTCCTAATCGAGCAGTGGATTGAAATAAGGAACCAAGTGAATTCGAGAAGCCGAGATAAAGTATTTTCAATGACGGTGAATTTGACAATCACAGATGTTGTGCTTCAATATGTTGTTGGCGAAGACGGCAGCACATTTGGTGGAGAAGATCATAGAGTGGTTCCAGCATGCGACAAAGCTCTTAAGAAGATGTTGAAGAGATTGGAAATGAGAGAGGAAGATGAAAGAGTTTGTGTGATATGTTTGGATGAAGTTGGGAAAAAGAAGAATGGAAGGATTGGTTTGGAAATGCCTTGTTTACATGTGTTTCATGGGAAATGCATTGAAAATTGGTTCAAAAATAGCCATTGTTGTCCAATTTGTAGATTTGAAATGCCAATCAGTTCAGACTTAGATGAAGATTCTTGAGAATTTTAGTGAAAGAACAGATATAATCTTGTTTTTCTGAAATTCTTTTGTTATTTTTTCCCCTCATTTATTAAATTAGGATTTTTGTTTCCTTCCCTTCACCCACTCCAATTTATATATATCTGTGTTGAACATTAATTATATATTTAAAAAAAAAACTTAATTTCTCACTCTACTGCTAATCGACTAATTGTAACACTATATTCTAAAAAAGCAGAATTAATCCTTAAAGTAATTACATAAAAGTTAATTTCTTTTTAAGGAAAACAATACAAGGAATGGTACTTCTCTCCTAAAATTTTCATTTTGAATAATCTTCAAAGCCATTCTCAACCAATAAACTGATCCTCAATGCATGGTAGTGTTTGTCTTTCCCATTCAAAGAATGAGAAGTTGTGTTAGTGTACATCATCCAAATGAACTCCATAAACATTCGCCTTGAACTCAAAAGTTCTTCAAGACCGAGAACTTCGGTATCTCGAATCAAAGAAAGCTAATCAAAGTCCAATGAGATAAAATTTGACCATTACCTAATAGTAATGTGCATCTAACAATATTCTCAATCATTGAAAAGCACAAGGCTCCATTTTCCAACCAATCTCTTCTAAAAGATCTTTACTTGAAGAGGTCTGGATTCAACCAATCCCTGCAAAATTTTGAAGTTTAAAACAAAGCTTTAACTTTTAAATTCATTCATGATTGAAAAAGGGAAGGGGGATTGTGTGTTGTACTTGCTAATGTCGTCAAGGTGATCATCGAAGTCCACCACATCTTGCCATTTTTCAGATGATATGAAATCCAACAGGACCACGTTTGCTGAAGGTTCCTTCATCATCAGCTGGCTGCTTCCATCTGATCCAGCCAACTTCCAGTTCTTGGAAGTTTCCTTTGTGTATAGCTGGTAGGAGACAAAACGAACAAAATGAATGAGAAGAGCATTAATGCGACCATCTCCTCATGCTTAGTCTCTACCATATTTCAAGATGAAACTAACAACGTAGACAAGGCCTATAGTTTACAAGTATTCCTAGATTAGAAGACATCCGGTTCAGTCAGGATGCATAAGTTGAATGCAGCACAAACAGCTATGATAATCAGATAGTGTTAATTGTAAACTGGAGTTATTCATAAAATGCAATCACATCTTGATTAAACTAAACGATTCCAAAGAAACCTTATACAGGTCATCTCGGAATCAATTTGAATATTAGAAAGAGTAAAATAGCTATGCTAAGGTGATAAAAGGCAATTGGAACGAGAAGCAATCGGAATCTAGAAATGCTAGCTCGCAGAAGACTCCCAATCTTAAAGTGAACTTCCAACGACACCAACCCCCAGTAACACTCACTCATAGGATTTTAAATCAGGCCACCATGAACTAAATCCAATCACTCTAAAGATGAAGGTCTGCTTGACGTCGCAATAGATAGGGACTAGGGACTTACAATTTTTTGTTTAATTTGTTCATAATTTATGCTTCTTTTGGGGTAGGACAATTATGGGCTAATGGGTGGGTTGCAATATTTAAAGGGAAAAAAAGAATCTAGCTTGTCCCCTTCAAGTATCTGGGAGAGGACATGCTAGCCAAAAAAACAATTTATATGGGATACCTGAATTCACATATTAGCCACATATCCAAAGCATACCTGAACAAACCAACATCCAATACAGATTCTTTTTCTCAAACGAAGTATCATAGATTCTATATAATAGTGTAGGAATCCATTTGGAAACAAATCTGATACCCATGATTCTCCCTTCCGACCCAAATTCTTTCACCAGATGACCACTCTGCTACATTTAAGTACCAAAGAGAAATTCAAAGAATTCTAATGAAGATGGCCGATCGCCATAACTTAAACTTGTCCTCTCTTTGGCCCTTAGTCACTAGTCCAACCCAAGGTAGCTGGTAAAACAAGAAACTCCAACAGGATAAAACCCATTTTTTCCTTTTTAGGAAAATGCAGAAGGGAATGATCAAATAAGGTTGATTCACGA ATGGAATATCAAATCTCTCGATACTCAACTACGGCAGTGGAAGTAGATATAGATGTTCCGAAGTGGACAAAAATCCCGAAGCATCCATCACCAATCGAACTAATTGGCTTGCTCTTCACCCTACGTCGTCGTTGCAACCGCTTTCAGGTGCTGGAGAACGGTGAACGACAATTAGTAGAGGAACAAGAGATATCAAAAGTTCCTCTATGCGACCACCAATTCCCTGTTGAAATATTTAATGGAGACAGCAGTTCTCTATTCCAATACCTCTGTTGTAGCTTCGAAAACTACGAATCTAAAATTGATGCAGAGGTGGTAGCAAGTGTCCTAATCGAGCAGTGGATTGAAATAAGGAACCAAGTGAATTCGAGAAGCCGAGATAAAGTATTTTCAATGACGGTGAATTTGACAATCACAGATGTTGTGCTTCAATATGTTGTTGGCGAAGACGGCAGCACATTTGGTGGAGAAGATCATAGAGTGGTTCCAGCATGCGACAAAGCTCTTAAGAAGATGTTGAAGAGATTGGAAATGAGAGAGGAAGATGAAAGAGTTTGTGTGATATGTTTGGATGAAGTTGGGAAAAAGAAGAATGGAAGGATTGGTTTGGAAATGCCTTGTTTACATGTGTTTCATGGGAAATGCATTGAAAATTGGTTCAAAAATAGCCATTGTTGTCCAATTTGTAGATTTGAAATGCCAATCAGTTCAGACTTAGATGAAGATTCTTGA ATGGAATATCAAATCTCTCGATACTCAACTACGGCAGTGGAAGTAGATATAGATGTTCCGAAGTGGACAAAAATCCCGAAGCATCCATCACCAATCGAACTAATTGGCTTGCTCTTCACCCTACGTCGTCGTTGCAACCGCTTTCAGGTGCTGGAGAACGGTGAACGACAATTAGTAGAGGAACAAGAGATATCAAAAGTTCCTCTATGCGACCACCAATTCCCTGTTGAAATATTTAATGGAGACAGCAGTTCTCTATTCCAATACCTCTGTTGTAGCTTCGAAAACTACGAATCTAAAATTGATGCAGAGGTGGTAGCAAGTGTCCTAATCGAGCAGTGGATTGAAATAAGGAACCAAGTGAATTCGAGAAGCCGAGATAAAGTATTTTCAATGACGGTGAATTTGACAATCACAGATGTTGTGCTTCAATATGTTGTTGGCGAAGACGGCAGCACATTTGGTGGAGAAGATCATAGAGTGGTTCCAGCATGCGACAAAGCTCTTAAGAAGATGTTGAAGAGATTGGAAATGAGAGAGGAAGATGAAAGAGTTTGTGTGATATGTTTGGATGAAGTTGGGAAAAAGAAGAATGGAAGGATTGGTTTGGAAATGCCTTGTTTACATGTGTTTCATGGGAAATGCATTGAAAATTGGTTCAAAAATAGCCATTGTTGTCCAATTTGTAGATTTGAAATGCCAATCAGTTCAGACTTAGATGAAGATTCTTGA MEYQISRYSTTAVEVDIDVPKWTKIPKHPSPIELIGLLFTLRRRCNRFQVLENGERQLVEEQEISKVPLCDHQFPVEIFNGDSSSLFQYLCCSFENYESKIDAEVVASVLIEQWIEIRNQVNSRSRDKVFSMTVNLTITDVVLQYVVGEDGSTFGGEDHRVVPACDKALKKMLKRLEMREEDERVCVICLDEVGKKKNGRIGLEMPCLHVFHGKCIENWFKNSHCCPICRFEMPISSDLDEDS* Homology
BLAST of CsaV3_4G029160 vs. NCBI nr
Match: XP_011654386.1 (RING finger protein 141 [Cucumis sativus] >KGN54667.1 hypothetical protein Csa_012982 [Cucumis sativus]) HSP 1 Score: 506.1 bits (1302), Expect = 1.6e-139 Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0
BLAST of CsaV3_4G029160 vs. NCBI nr
Match: XP_016901804.1 (PREDICTED: RING finger protein 141-like [Cucumis melo] >KAA0025781.1 RING finger protein 141-like [Cucumis melo var. makuwa] >TYK09674.1 RING finger protein 141-like protein [Cucumis melo var. makuwa]) HSP 1 Score: 439.1 bits (1128), Expect = 2.5e-119 Identity = 207/242 (85.54%), Postives = 223/242 (92.15%), Query Frame = 0
BLAST of CsaV3_4G029160 vs. NCBI nr
Match: KAG6571896.1 (E3 ubiquitin-protein ligase MPSR1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 297.0 bits (759), Expect = 1.5e-76 Identity = 146/237 (61.60%), Postives = 182/237 (76.79%), Query Frame = 0
BLAST of CsaV3_4G029160 vs. NCBI nr
Match: XP_022952293.1 (ERAD-associated E3 ubiquitin-protein ligase HRD1-like [Cucurbita moschata] >KAG7011584.1 HRD1, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 294.7 bits (753), Expect = 7.5e-76 Identity = 144/237 (60.76%), Postives = 182/237 (76.79%), Query Frame = 0
BLAST of CsaV3_4G029160 vs. NCBI nr
Match: XP_023511497.1 (ERAD-associated E3 ubiquitin-protein ligase HRD1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 293.1 bits (749), Expect = 2.2e-75 Identity = 144/237 (60.76%), Postives = 182/237 (76.79%), Query Frame = 0
BLAST of CsaV3_4G029160 vs. ExPASy Swiss-Prot
Match: Q9P0P0 (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens OX=9606 GN=RNF181 PE=1 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 4.4e-10 Identity = 30/86 (34.88%), Postives = 47/86 (54.65%), Query Frame = 0
BLAST of CsaV3_4G029160 vs. ExPASy Swiss-Prot
Match: Q9LQX2 (E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 2.2e-09 Identity = 27/56 (48.21%), Postives = 34/56 (60.71%), Query Frame = 0
BLAST of CsaV3_4G029160 vs. ExPASy Swiss-Prot
Match: Q3T0W3 (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus OX=9913 GN=RNF181 PE=2 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 2.2e-09 Identity = 30/86 (34.88%), Postives = 45/86 (52.33%), Query Frame = 0
BLAST of CsaV3_4G029160 vs. ExPASy Swiss-Prot
Match: Q6AXU4 (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus OX=10116 GN=Rnf181 PE=1 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 3.7e-09 Identity = 30/86 (34.88%), Postives = 47/86 (54.65%), Query Frame = 0
BLAST of CsaV3_4G029160 vs. ExPASy Swiss-Prot
Match: Q9SNB6 (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 2.4e-08 Identity = 28/75 (37.33%), Postives = 41/75 (54.67%), Query Frame = 0
BLAST of CsaV3_4G029160 vs. ExPASy TrEMBL
Match: A0A0A0L236 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G419590 PE=4 SV=1) HSP 1 Score: 506.1 bits (1302), Expect = 8.0e-140 Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0
BLAST of CsaV3_4G029160 vs. ExPASy TrEMBL
Match: A0A5A7SNF1 (RING finger protein 141-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00770 PE=4 SV=1) HSP 1 Score: 439.1 bits (1128), Expect = 1.2e-119 Identity = 207/242 (85.54%), Postives = 223/242 (92.15%), Query Frame = 0
BLAST of CsaV3_4G029160 vs. ExPASy TrEMBL
Match: A0A1S4E0Q9 (RING finger protein 141-like OS=Cucumis melo OX=3656 GN=LOC103495859 PE=4 SV=1) HSP 1 Score: 439.1 bits (1128), Expect = 1.2e-119 Identity = 207/242 (85.54%), Postives = 223/242 (92.15%), Query Frame = 0
BLAST of CsaV3_4G029160 vs. ExPASy TrEMBL
Match: A0A6J1GK53 (ERAD-associated E3 ubiquitin-protein ligase HRD1-like OS=Cucurbita moschata OX=3662 GN=LOC111455016 PE=4 SV=1) HSP 1 Score: 294.7 bits (753), Expect = 3.6e-76 Identity = 144/237 (60.76%), Postives = 182/237 (76.79%), Query Frame = 0
BLAST of CsaV3_4G029160 vs. ExPASy TrEMBL
Match: A0A6J1I8N9 (ERAD-associated E3 ubiquitin-protein ligase HRD1-like OS=Cucurbita maxima OX=3661 GN=LOC111471014 PE=4 SV=1) HSP 1 Score: 288.5 bits (737), Expect = 2.6e-74 Identity = 142/240 (59.17%), Postives = 181/240 (75.42%), Query Frame = 0
BLAST of CsaV3_4G029160 vs. TAIR 10
Match: AT1G21960.1 (RING/U-box superfamily protein ) HSP 1 Score: 72.0 bits (175), Expect = 7.4e-13 Identity = 45/158 (28.48%), Postives = 74/158 (46.84%), Query Frame = 0
BLAST of CsaV3_4G029160 vs. TAIR 10
Match: AT1G14200.1 (RING/U-box superfamily protein ) HSP 1 Score: 70.5 bits (171), Expect = 2.2e-12 Identity = 37/96 (38.54%), Postives = 52/96 (54.17%), Query Frame = 0
BLAST of CsaV3_4G029160 vs. TAIR 10
Match: AT3G15740.1 (RING/U-box superfamily protein ) HSP 1 Score: 70.5 bits (171), Expect = 2.2e-12 Identity = 39/100 (39.00%), Postives = 52/100 (52.00%), Query Frame = 0
BLAST of CsaV3_4G029160 vs. TAIR 10
Match: AT5G56340.1 (RING/U-box superfamily protein ) HSP 1 Score: 65.9 bits (159), Expect = 5.3e-11 Identity = 35/104 (33.65%), Postives = 55/104 (52.88%), Query Frame = 0
BLAST of CsaV3_4G029160 vs. TAIR 10
Match: AT1G26800.1 (RING/U-box superfamily protein ) HSP 1 Score: 64.3 bits (155), Expect = 1.5e-10 Identity = 27/56 (48.21%), Postives = 34/56 (60.71%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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