Tan0021089.2 (mRNA) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTTATTCCTGTCGAGTTTTTCCTCTCAAGTACAATTGCGTCTCTTGCTTTTTCCTCCTCTTTGTGTTGCTTCTACGGCTGTCTATCTGTCTATTCTTCTTTCGCTTCCTTTTGATGAATTTTTGTCATCTTCGGCTATCTCGGAGGTTAATTGTATGAAATATTTGACTGTGTACTTTGCAAATGTCTTGTAATATCATAATCTTTCTTTAATCTGTCTTCTGCGATTCTTCATCTCTTTGAATGCATATGTACCAGTCGTAGTTTCTTTATTGAGAACAATCGAGAGTGATATTGAGTTTTTTTCGTATCAGATATTTTACGTACCAGTAGATAATGGCTACTGAAGAAGACTCCGTCGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAGAGCTCTAAGAGCTGCTCAAGAATTGTTAAACGCTCCAGATGAGAAGACTTCTGGAGGAGAGGATAAAGAGAATGGTGCTACTCCAGATACCGAAGAAACGTAAGTGTATATCTTTTTTCTTCCACCAAAGATAAACTGCTGTACTAGAAGTTATTTTTTTCTAGGCTTGTTTTTTTGTTTTGATTTCTGGAGTAAGTCGAATACCAGTAATGATTGGATTTCTCAAATTCCGAAATGTTTTTTTTCCGATTCGTGGATCACCTTACTTGTAAGCACATTTGTAACGTACAGGTAGGTTCAATTTGACTTCTCTGACTGTAGTATCCTCTCTCGAGTCTTGCATCATCTACTATCCTTTAGTTGTGCTTTTAAAAATCTAGCCTAGGATATCATCTCCGAATACGAACTATAGATTAGAAGCTTGAAGCTTCAAGAATATAGAAAATGAATATGATTGAGAAAGTTCCTGCACAATAATCCATTTAGGCTACATCATTCTATAGAAAAAGTTTTATGGCTCATATCTCCTAGAAACTGAGAATCGACAAAACAAATATTCTGTTGAAGGTAAAACTATGAAGGAGATGGAGAGGAGAAAAGAATAGATTTCATGATACTTACCCGCTCTCTGACTGTCTGTCTCCTCCTAGGAATGGCGATGTCCTTCTTCCTCTGCCTTTAACCACCCTCTTTTATCTTTATGTTTATATTCTAACCTCTTTCCCTGATATTTTAACTATTTCTCTCTCACTCCCTTCCTCTTACTCTTCCTTCGTCCGCCCCATCTCTCTGTCTCTAGTTTGACTATCTCCTTTTTTTCCCTTTTGTTTTATGGTGGGAGTCCATGCTGAAATTACATGTTGGCATAGTGAGCCAAGTTTCTCTAGAATCTAGCTTGGGAAATGTTAGACTACTTCTGCATGCTGTAGTCAGTGTGCCAAGCTCTCTAGAACTTGGTTTGGGACGTATTCCAAATGACAGCCTTAGCAGTAATATCTGCTTGTCATGGCAGCAGGCAAAAATTTTCTCCCTTTCCTCAGTAAGATGTGGTTTCTGTTTGCAGACTATAGTCATAAACGGCCACAAAAGGTCCATATAGAGCAGAAGGCTAGCCAAATGTATGATAAGATAGTTTAGAAACTAAGCTGTAAAGTTTTTGTTATCATGATGCATGTGAAGCATGTTCGTAAAAGTATCCTCCCATCAATGAGATATTTCTCTCTTTTTTTTTTCTTTTTCTTAATTCTTTCTTTTTTCCCTCTCTTTTTCCGGTTTTCCTTTCTGATTTTTAACAACATTTGGGCTGGTAGAGTTTGGGATGATGATGATGCAACGACAATGATGGCGTTATACAGCTTAATTGCTTATTTATCTTGCGGGATATGTTTTCATGGTCACCTTCAAATGTGTTTCAATATATTTTGTCTCTTGCAATGGGGAAAATGTGTTCTTATATAAATGATATTCTTTTGTCTATTGAATGTAAGTTTAGTTTGAACTTATTTGAAAAATTGACATATACAATTGTACATGTTAAGTAGCTCTTCCTTCTTGCAATGAGTGCAAAATACAGGCAAGCTCGTTTTTTGTTGCTGGATTTTTATATACATTTTTTGCCTTTTCCGTTCTTGATACACTAATATATTATCCTTTTGCAGTAATCTTAGTATGAAATTTCGGAACTATGTTCCTCATGATAAGGAGCTTCAGGAGGGTAAGCTTGCCCCACCTGTATTGCCGAAGTTTGAGGACCCCGTTGCTACGGAACCTCCACAAATAAAAGAGGTAATTTTGTCAGTTCTGCTTTTATATGTTTTTATACTGGCCTATGCCCGTACGTTTTGGATCTTTTTTTTAATTAATTATATTCCATCGGCAAAATTACAGGATCCATTTGTAAATATTGCTCCAAAGAAACCAAACTGGGACCTCAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGGCGTACTCAGAAAGCATTATATAAGCTAATGGGTAAGTTGAAATATTGAATTAGAGGTCTATGCAACATTTTTTATGCTCGTTCTTTTACTTGCTTCGTTTGGTAGTGTAATTGGACTTAACGAATTGAAATTTATTTGCTCTGTTTGTCTGACAAGATATCTATCTCTAGTCAATTAGCTTATGCATAATATCATTTGATATTATTTGTTTGTTGGTCCTAGCACCTTCCTTCGATCAGAAGGTTAGAGGTTCGAATCCCCCACCTCTCAATTGTGATGAACAATTAAGGGATCTCGATTATCATATTTCAAGCAGTCGCGTTCAATTCAAACATGCATGATGAAATGTTGCTTGTGACCTTTTTCTCTTACTGTTTTTAACCTACTACATATATGCCAGATTAAAGAATCATCGTCTGAAATAGTCAACAAGAGCATAGCTCAACTGGCATCAAGTAAGACTTATGACTAAGAGCATGAGTTCGAATCTCTCCACCCCCAATTGTTGATGTACTCAAAAAAAAAAAAAAAAAGAATCATCGCCTGAAATAAAAGACATTTTTGGAGTTAATTGAGTTCTGTAAGGATATTTTAGAGTATTTGATCTGGTTGCAAATCACAAGAATTTCTTATATAATTATGATTATCAATGATTGGGAGGCGCTGATGTTGATTATGTAGGACAACCTACCCGGCCTCTAAGCTGTTTAGCCAGCCCCTTTTTTTGTATCTATAACACTCGACAAGTTTCTTATCAAAGAATCTAGAGTATTTGGTCGCCAGTTGTGAATCTTATGATTGAAACAGTCTTCAATCTTGAAGTTTGAACCTGCTGGGCAGTTAAAGTTTGGGGGATTTCTTGGTATCGAGGGAAGTTATGGAGCTTGGAGTAATCTAGTGCCAGTGTAAACCATAGCCAGTCATTAACTTTATGTACTGATAAACTCGTGAAGATATGGAATGTTACAGGGAAGATCAGGATATCTTTTCCTAGGCAGGTTGCTTGTTTATTTATTTATTTTTAATGGACATTACATCACAAATATGATGTGAGGCTACGAATCTACAATATTTAAAAGGAATTATTGGACCTACTACGACCTTTAAGAGGAATTAGATATGTCTTATAGTTGTATTCAAGTTGATGTAGGTTACTCCTGTTAGCTAGCATTGGAAGTTACAATATTGATTATTATATGAATCATTAAAAAGGTAGAAAATTATGTGAAACTCTGAAATTATAGAGTGGTTACACAGTTAGAGCATCCTGCTTACTTGCCTTGATGAACTTTATTATTCTTGTTTAATTTTTTGTAGAGGAACAGGAAAAGCAAAAGCAGACAGCTGAAGGAGACGATGACCAAAATGGTACAGAGGGATAGAAAGCCACAAGTTATGAGCTCTAAATATTAGAGTAGTAACATTCCCGAATACTCCGACATTGAGAAATTTGTCACTGAAGAAAAATGGGCGTTGCTGGCTCCTAGTGTCAGTTTTTCTGTGACCTTTCTGATCATTCTTGGCTGCAAATCTTTAGTTTGTCTATTGTGGCTTATGGTGCCCCCTTACTAATTACGCTCCATAGTGTTATATCTCATACTGGATAGATTTGTAATTTACCTATACTACCTTAAAATAACTTTTTTCCTTTTGAAACTGCAA GTTATTCCTGTCGAGTTTTTCCTCTCAAGTACAATTGCGTCTCTTGCTTTTTCCTCCTCTTTGTGTTGCTTCTACGGCTGTCTATCTGTCTATTCTTCTTTCGCTTCCTTTTGATGAATTTTTGTCATCTTCGGCTATCTCGGAGGTTAATTATATTTTACGTACCAGTAGATAATGGCTACTGAAGAAGACTCCGTCGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAGAGCTCTAAGAGCTGCTCAAGAATTGTTAAACGCTCCAGATGAGAAGACTTCTGGAGGAGAGGATAAAGAGAATGGTGCTACTCCAGATACCGAAGAAACTAATCTTAGTATGAAATTTCGGAACTATGTTCCTCATGATAAGGAGCTTCAGGAGGGTAAGCTTGCCCCACCTGTATTGCCGAAGTTTGAGGACCCCGTTGCTACGGAACCTCCACAAATAAAAGAGGATCCATTTGTAAATATTGCTCCAAAGAAACCAAACTGGGACCTCAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGGCGTACTCAGAAAGCATTATATAAGCTAATGGAGGAACAGGAAAAGCAAAAGCAGACAGCTGAAGGAGACGATGACCAAAATGGTACAGAGGGATAGAAAGCCACAAGTTATGAGCTCTAAATATTAGAGTAGTAACATTCCCGAATACTCCGACATTGAGAAATTTGTCACTGAAGAAAAATGGGCGTTGCTGGCTCCTAGTGTCAGTTTTTCTGTGACCTTTCTGATCATTCTTGGCTGCAAATCTTTAGTTTGTCTATTGTGGCTTATGGTGCCCCCTTACTAATTACGCTCCATAGTGTTATATCTCATACTGGATAGATTTGTAATTTACCTATACTACCTTAAAATAACTTTTTTCCTTTTGAAACTGCAA ATGGCTACTGAAGAAGACTCCGTCGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAGAGCTCTAAGAGCTGCTCAAGAATTGTTAAACGCTCCAGATGAGAAGACTTCTGGAGGAGAGGATAAAGAGAATGGTGCTACTCCAGATACCGAAGAAACTAATCTTAGTATGAAATTTCGGAACTATGTTCCTCATGATAAGGAGCTTCAGGAGGGTAAGCTTGCCCCACCTGTATTGCCGAAGTTTGAGGACCCCGTTGCTACGGAACCTCCACAAATAAAAGAGGATCCATTTGTAAATATTGCTCCAAAGAAACCAAACTGGGACCTCAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGGCGTACTCAGAAAGCATTATATAAGCTAATGGAGGAACAGGAAAAGCAAAAGCAGACAGCTGAAGGAGACGATGACCAAAATGGTACAGAGGGATAG MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQTAEGDDDQNGTEG Homology
BLAST of Tan0021089.2 vs. ExPASy Swiss-Prot
Match: Q8WUD4 (Coiled-coil domain-containing protein 12 OS=Homo sapiens OX=9606 GN=CCDC12 PE=1 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 2.3e-12 Identity = 59/149 (39.60%), Postives = 90/149 (60.40%), Query Frame = 0
BLAST of Tan0021089.2 vs. ExPASy Swiss-Prot
Match: Q8R344 (Coiled-coil domain-containing protein 12 OS=Mus musculus OX=10090 GN=Ccdc12 PE=1 SV=2) HSP 1 Score: 72.8 bits (177), Expect = 3.8e-12 Identity = 58/149 (38.93%), Postives = 89/149 (59.73%), Query Frame = 0
BLAST of Tan0021089.2 vs. NCBI nr
Match: XP_023542240.1 (coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023542241.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023542242.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023542243.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 280.0 bits (715), Expect = 1.2e-71 Identity = 147/154 (95.45%), Postives = 150/154 (97.40%), Query Frame = 0
BLAST of Tan0021089.2 vs. NCBI nr
Match: XP_022994277.1 (coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima] >XP_022994278.1 coiled-coil domain-containing protein 12-like isoform X2 [Cucurbita maxima] >XP_022994279.1 coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima] >XP_022994280.1 coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima] >XP_022994281.1 coiled-coil domain-containing protein 12-like isoform X2 [Cucurbita maxima] >XP_022994282.1 coiled-coil domain-containing protein 12-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 278.1 bits (710), Expect = 4.6e-71 Identity = 145/154 (94.16%), Postives = 149/154 (96.75%), Query Frame = 0
BLAST of Tan0021089.2 vs. NCBI nr
Match: XP_022955111.1 (coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022955112.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022955113.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022955114.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata]) HSP 1 Score: 276.2 bits (705), Expect = 1.7e-70 Identity = 145/154 (94.16%), Postives = 149/154 (96.75%), Query Frame = 0
BLAST of Tan0021089.2 vs. NCBI nr
Match: KAG6572999.1 (Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 276.2 bits (705), Expect = 1.7e-70 Identity = 145/154 (94.16%), Postives = 149/154 (96.75%), Query Frame = 0
BLAST of Tan0021089.2 vs. NCBI nr
Match: XP_022155130.1 (coiled-coil domain-containing protein 12 isoform X1 [Momordica charantia]) HSP 1 Score: 273.1 bits (697), Expect = 1.5e-69 Identity = 143/154 (92.86%), Postives = 148/154 (96.10%), Query Frame = 0
BLAST of Tan0021089.2 vs. ExPASy TrEMBL
Match: A0A6J1JYP1 (coiled-coil domain-containing protein 12-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490058 PE=4 SV=1) HSP 1 Score: 278.1 bits (710), Expect = 2.2e-71 Identity = 145/154 (94.16%), Postives = 149/154 (96.75%), Query Frame = 0
BLAST of Tan0021089.2 vs. ExPASy TrEMBL
Match: A0A6J1GST8 (coiled-coil domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=LOC111457177 PE=4 SV=1) HSP 1 Score: 276.2 bits (705), Expect = 8.5e-71 Identity = 145/154 (94.16%), Postives = 149/154 (96.75%), Query Frame = 0
BLAST of Tan0021089.2 vs. ExPASy TrEMBL
Match: A0A6J1DLK0 (coiled-coil domain-containing protein 12 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022269 PE=4 SV=1) HSP 1 Score: 273.1 bits (697), Expect = 7.2e-70 Identity = 143/154 (92.86%), Postives = 148/154 (96.10%), Query Frame = 0
BLAST of Tan0021089.2 vs. ExPASy TrEMBL
Match: A0A1S3ATB1 (coiled-coil domain-containing protein 12 OS=Cucumis melo OX=3656 GN=LOC103482658 PE=4 SV=1) HSP 1 Score: 265.8 bits (678), Expect = 1.1e-67 Identity = 141/153 (92.16%), Postives = 144/153 (94.12%), Query Frame = 0
BLAST of Tan0021089.2 vs. ExPASy TrEMBL
Match: A0A5D3BJ95 (Coiled-coil domain-containing protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002830 PE=4 SV=1) HSP 1 Score: 265.8 bits (678), Expect = 1.1e-67 Identity = 141/153 (92.16%), Postives = 144/153 (94.12%), Query Frame = 0
BLAST of Tan0021089.2 vs. TAIR 10
Match: AT3G05070.1 (CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Has 292 Blast hits to 292 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 83; Plants - 38; Viruses - 11; Other Eukaryotes - 42 (source: NCBI BLink). ) HSP 1 Score: 177.9 bits (450), Expect = 6.0e-45 Identity = 100/148 (67.57%), Postives = 115/148 (77.70%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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