Tan0021089 (gene) Snake gourd v1

Overview


Name	Tan0021089
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	coiled-coil domain-containing protein 12-like
Location	LG05: 71905596 .. 71909750 (+)
RNA-Seq Expression	Tan0021089
Synteny	Tan0021089

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGAGATTCAGAGGGCTTTCGCGCAAGAAACATTCGTTTCGTATCTTTCGCCATTGCTCGAACTCGAAATACAACTTTTTGAAGAAAAGTGTTCTTCCTCTCGAGTTTTTCTGTAAGTTTATTTGAATGTTATTCCTGTCGAGTTTTTCCTCTCAAGTACAATTGCGTCTCTTGCTTTTTCCTCCTCTTTGTGTTGCTTCTACGGCTGTCTATCTGTCTATTCTTCTTTCGCTTCCTTTTGATGAATTTTTGTCATCTTCGGCTATCTCGGAGGTTAATTGTATGAAATATTTGACTGTGTACTTTGCAAATGTCTTGTAATATCATAATCTTTCTTTAATCTGTCTTCTGCGATTCTTCATCTCTTTGAATGCATATGTACCAGTCGTAGTTTCTTTATTGAGAACAATCGAGAGTGATATTGAGTTTTTTTCGTATCAGATATTTTACGTACCAGTAGATAATGGCTACTGAAGAAGACTCCGTCGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAGAGCTCTAAGAGCTGCTCAAGAATTGTTAAACGCTCCAGATGAGAAGACTTCTGGAGGAGAGGATAAAGAGAATGGTGCTACTCCAGATACCGAAGAAACGTAAGTGTATATCTTTTTTCTTCCACCAAAGATAAACTGCTGTACTAGAAGTTATTTTTTTCTAGGCTTGTTTTTTTGTTTTGATTTCTGGAGTAAGTCGAATACCAGTAATGATTGGATTTCTCAAATTCCGAAATGTTTTTTTTCCGATTCGTGGATCACCTTACTTGTAAGCACATTTGTAACGTACAGGTAGGTTCAATTTGACTTCTCTGACTGTAGTATCCTCTCTCGAGTCTTGCATCATCTACTATCCTTTAGTTGTGCTTTTAAAAATCTAGCCTAGGATATCATCTCCGAATACGAACTATAGATTAGAAGCTTGAAGCTTCAAGAATATAGAAAATGAATATGATTGAGAAAGTTCCTGCACAATAATCCATTTAGGCTACATCATTCTATAGAAAAAGTTTTATGGCTCATATCTCCTAGAAACTGAGAATCGACAAAACAAATATTCTGTTGAAGGTAAAACTATGAAGGAGATGGAGAGGAGAAAAGAATAGATTTCATGATACTTACCCGCTCTCTGACTGTCTGTCTCCTCCTAGGAATGGCGATGTCCTTCTTCCTCTGCCTTTAACCACCCTCTTTTATCTTTATGTTTATATTCTAACCTCTTTCCCTGATATTTTAACTATTTCTCTCTCACTCCCTTCCTCTTACTCTTCCTTCGTCCGCCCCATCTCTCTGTCTCTAGTTTGACTATCTCCTTTTTTTCCCTTTTGTTTTATGGTGGGAGTCCATGCTGAAATTACATGTTGGCATAGTGAGCCAAGTTTCTCTAGAATCTAGCTTGGGAAATGTTAGACTACTTCTGCATGCTGTAGTCAGTGTGCCAAGCTCTCTAGAACTTGGTTTGGGACGTATTCCAAATGACAGCCTTAGCAGTAATATCTGCTTGTCATGGCAGCAGGCAAAAATTTTCTCCCTTTCCTCAGTAAGATGTGGTTTCTGTTTGCAGACTATAGTCATAAACGGCCACAAAAGGTCCATATAGAGCAGAAGGCTAGCCAAATGTATGATAAGATAGTTTAGAAACTAAGCTGTAAAGTTTTTGTTATCATGATGCATGTGAAGCATGTTCGTAAAAGTATCCTCCCATCAATGAGATATTTCTCTCTTTTTTTTTTCTTTTTCTTAATTCTTTCTTTTTTCCCTCTCTTTTTCCGGTTTTCCTTTCTGATTTTTAACAACATTTGGGCTGGTAGAGTTTGGGATGATGATGATGCAACGACAATGATGGCGTTATACAGCTTAATTGCTTATTTATCTTGCGGGATATGTTTTCATGGTCACCTTCAAATGTGTTTCAATATATTTTGTCTCTTGCAATGGGGAAAATGTGTTCTTATATAAATGATATTCTTTTGTCTATTGAATGTAAGTTTAGTTTGAACTTATTTGAAAAATTGACATATACAATTGTACATGTTAAGTAGCTCTTCCTTCTTGCAATGAGTGCAAAATACAGGCAAGCTCGTTTTTTGTTGCTGGATTTTTATATACATTTTTTGCCTTTTCCGTTCTTGATACACTAATATATTATCCTTTTGCAGTAATCTTAGTATGAAATTTCGGAACTATGTTCCTCATGATAAGGAGCTTCAGGAGGGTAAGCTTGCCCCACCTGTATTGCCGAAGTTTGAGGACCCCGTTGCTACGGAACCTCCACAAATAAAAGAGGTAATTTTGTCAGTTCTGCTTTTATATGTTTTTATACTGGCCTATGCCCGTACGTTTTGGATCTTTTTTTTAATTAATTATATTCCATCGGCAAAATTACAGGATCCATTTGTAAATATTGCTCCAAAGAAACCAAACTGGGACCTCAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGGCGTACTCAGAAAGCATTATATAAGCTAATGGGTAAGTTGAAATATTGAATTAGAGGTCTATGCAACATTTTTTATGCTCGTTCTTTTACTTGCTTCGTTTGGTAGTGTAATTGGACTTAACGAATTGAAATTTATTTGCTCTGTTTGTCTGACAAGATATCTATCTCTAGTCAATTAGCTTATGCATAATATCATTTGATATTATTTGTTTGTTGGTCCTAGCACCTTCCTTCGATCAGAAGGTTAGAGGTTCGAATCCCCCACCTCTCAATTGTGATGAACAATTAAGGGATCTCGATTATCATATTTCAAGCAGTCGCGTTCAATTCAAACATGCATGATGAAATGTTGCTTGTGACCTTTTTCTCTTACTGTTTTTAACCTACTACATATATGCCAGATTAAAGAATCATCGTCTGAAATAGTCAACAAGAGCATAGCTCAACTGGCATCAAGTAAGACTTATGACTAAGAGCATGAGTTCGAATCTCTCCACCCCCAATTGTTGATGTACTCAAAAAAAAAAAAAAAAAGAATCATCGCCTGAAATAAAAGACATTTTTGGAGTTAATTGAGTTCTGTAAGGATATTTTAGAGTATTTGATCTGGTTGCAAATCACAAGAATTTCTTATATAATTATGATTATCAATGATTGGGAGGCGCTGATGTTGATTATGTAGGACAACCTACCCGGCCTCTAAGCTGTTTAGCCAGCCCCTTTTTTTGTATCTATAACACTCGACAAGTTTCTTATCAAAGAATCTAGAGTATTTGGTCGCCAGTTGTGAATCTTATGATTGAAACAGTCTTCAATCTTGAAGTTTGAACCTGCTGGGCAGTTAAAGTTTGGGGGATTTCTTGGTATCGAGGGAAGTTATGGAGCTTGGAGTAATCTAGTGCCAGTGTAAACCATAGCCAGTCATTAACTTTATGTACTGATAAACTCGTGAAGATATGGAATGTTACAGGGAAGATCAGGATATCTTTTCCTAGGCAGGTTGCTTGTTTATTTATTTATTTTTAATGGACATTACATCACAAATATGATGTGAGGCTACGAATCTACAATATTTAAAAGGAATTATTGGACCTACTACGACCTTTAAGAGGAATTAGATATGTCTTATAGTTGTATTCAAGTTGATGTAGGTTACTCCTGTTAGCTAGCATTGGAAGTTACAATATTGATTATTATATGAATCATTAAAAAGGTAGAAAATTATGTGAAACTCTGAAATTATAGAGTGGTTACACAGTTAGAGCATCCTGCTTACTTGCCTTGATGAACTTTATTATTCTTGTTTAATTTTTTGTAGAGGAACAGGAAAAGCAAAAGCAGACAGCTGAAGGAGACGATGACCAAAATGGTACAGAGGGATAGAAAGCCACAAGTTATGAGCTCTAAATATTAGAGTAGTAACATTCCCGAATACTCCGACATTGAGAAATTTGTCACTGAAGAAAAATGGGCGTTGCTGGCTCCTAGTGTCAGTTTTTCTGTGACCTTTCTGATCATTCTTGGCTGCAAATCTTTAGTTTGTCTATTGTGGCTTATGGTGCCCCCTTACTAATTACGCTCCATAGTGTTATATCTCATACTGGATAGATTTGTAATTTACCTATACTACCTTAAAATAACTTTTTTCCTTTTGAAACTGCAA

mRNA sequence

CAGAGATTCAGAGGGCTTTCGCGCAAGAAACATTCGTTTCGTATCTTTCGCCATTGCTCGAACTCGAAATACAACTTTTTGAAGAAAAGTGTTCTTCCTCTCGAGTTTTTCTATATTTTACGTACCAGTAGATAATGGCTACTGAAGAAGACTCCGTCGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAGAGCTCTAAGAGCTGCTCAAGAATTGTTAAACGCTCCAGATGAGAAGACTTCTGGAGGAGAGGATAAAGAGAATGGTGCTACTCCAGATACCGAAGAAACTAATCTTAGTATGAAATTTCGGAACTATGTTCCTCATGATAAGGAGCTTCAGGAGGGTAAGCTTGCCCCACCTGTATTGCCGAAGTTTGAGGACCCCGTTGCTACGGAACCTCCACAAATAAAAGAGGATCCATTTGTAAATATTGCTCCAAAGAAACCAAACTGGGACCTCAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGGCGTACTCAGAAAGCATTATATAAGCTAATGGAGGAACAGGAAAAGCAAAAGCAGACAGCTGAAGGAGACGATGACCAAAATGGTACAGAGGGATAGAAAGCCACAAGTTATGAGCTCTAAATATTAGAGTAGTAACATTCCCGAATACTCCGACATTGAGAAATTTGTCACTGAAGAAAAATGGGCGTTGCTGGCTCCTAGTGTCAGTTTTTCTGTGACCTTTCTGATCATTCTTGGCTGCAAATCTTTAGTTTGTCTATTGTGGCTTATGGTGCCCCCTTACTAATTACGCTCCATAGTGTTATATCTCATACTGGATAGATTTGTAATTTACCTATACTACCTTAAAATAACTTTTTTCCTTTTGAAACTGCAA

Coding sequence (CDS)

ATGGCTACTGAAGAAGACTCCGTCGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAGAGCTCTAAGAGCTGCTCAAGAATTGTTAAACGCTCCAGATGAGAAGACTTCTGGAGGAGAGGATAAAGAGAATGGTGCTACTCCAGATACCGAAGAAACTAATCTTAGTATGAAATTTCGGAACTATGTTCCTCATGATAAGGAGCTTCAGGAGGGTAAGCTTGCCCCACCTGTATTGCCGAAGTTTGAGGACCCCGTTGCTACGGAACCTCCACAAATAAAAGAGGATCCATTTGTAAATATTGCTCCAAAGAAACCAAACTGGGACCTCAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGGCGTACTCAGAAAGCATTATATAAGCTAATGGAGGAACAGGAAAAGCAAAAGCAGACAGCTGAAGGAGACGATGACCAAAATGGTACAGAGGGATAG

Protein sequence

MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQTAEGDDDQNGTEG

Homology

[Close]

BLAST of Tan0021089 vs. ExPASy Swiss-Prot
Match: Q8WUD4 (Coiled-coil domain-containing protein 12 OS=Homo sapiens OX=9606 GN=CCDC12 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.3e-12
Identity = 59/149 (39.60%), Postives = 90/149 (60.40%), Query Frame = 0


Query: 8   VEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTE---------ETNLSMK 67
           +E+ A  RKERL+ALR          EKT G +DKE+G  P T+         E +  ++
Sbjct: 11  LEEEALRRKERLKALR----------EKT-GRKDKEDG-EPKTKHLREEEEEGEKHRELR 70

Query: 68  FRNYVPHDKELQEGKL--APPVL----PKFEDPVATEPPQIKEDPFVNIAPKKPNWDLRR 127
            RNYVP D++L++ ++  A PV      K +   A   P I+E    N+AP+KP+WDL+R
Sbjct: 71  LRNYVPEDEDLKKRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKR 130

Query: 128 DVQKKLDKLERRTQKALYKLMEEQEKQKQ 142
           DV KKL+KL++RTQ+A+ +L+ E+ K ++
Sbjct: 131 DVAKKLEKLKKRTQRAIAELIRERLKGQE 147

[Close]

BLAST of Tan0021089 vs. ExPASy Swiss-Prot
Match: Q8R344 (Coiled-coil domain-containing protein 12 OS=Mus musculus OX=10090 GN=Ccdc12 PE=1 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 3.8e-12
Identity = 58/149 (38.93%), Postives = 89/149 (59.73%), Query Frame = 0


Query: 8   VEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEE---------TNLSMK 67
           +E+ A  RKERL+ALR          EKT G +D+E+G  P T++          +  ++
Sbjct: 11  LEEEALRRKERLKALR----------EKT-GRKDREDG-EPQTKQLREEGEEVGKHRGLR 70

Query: 68  FRNYVPHDKELQEGKL--APPVL----PKFEDPVATEPPQIKEDPFVNIAPKKPNWDLRR 127
            RNYVP D++L+  ++  A PV      K +   A   P I+E    N+AP+KP+WDL+R
Sbjct: 71  LRNYVPEDEDLKRRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKR 130

Query: 128 DVQKKLDKLERRTQKALYKLMEEQEKQKQ 142
           DV KKL+KLE+RTQ+A+ +L+ E+ K ++
Sbjct: 131 DVAKKLEKLEKRTQRAIAELIRERLKGQE 147

[Close]

BLAST of Tan0021089 vs. NCBI nr
Match: XP_023542240.1 (coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023542241.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023542242.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023542243.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 280.0 bits (715), Expect = 1.2e-71
Identity = 147/154 (95.45%), Postives = 150/154 (97.40%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFR 60
           MATEEDSVEQVAAAR+ERLRALRAAQELLNAPDEKTSGGEDKENGA  DTEETNL MKFR
Sbjct: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDKENGAAADTEETNLGMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQ+KEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMEEQEKQKQTAEGDDDQNGTEG 155
           LERRTQKALYKLMEEQEKQKQ+AEGDDDQN TEG
Sbjct: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNDTEG 154

[Close]

BLAST of Tan0021089 vs. NCBI nr
Match: XP_022994277.1 (coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima] >XP_022994278.1 coiled-coil domain-containing protein 12-like isoform X2 [Cucurbita maxima] >XP_022994279.1 coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima] >XP_022994280.1 coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima] >XP_022994281.1 coiled-coil domain-containing protein 12-like isoform X2 [Cucurbita maxima] >XP_022994282.1 coiled-coil domain-containing protein 12-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 278.1 bits (710), Expect = 4.6e-71
Identity = 145/154 (94.16%), Postives = 149/154 (96.75%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFR 60
           MATEEDSVEQVAAAR+ERLRALR AQELLNAPDEKTSGGED+ENG   DTEETNL MKFR
Sbjct: 1   MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQ+KEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMEEQEKQKQTAEGDDDQNGTEG 155
           LERRTQKALYKLMEEQEKQKQ+AEGDDDQNGTEG
Sbjct: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNGTEG 154

[Close]

BLAST of Tan0021089 vs. NCBI nr
Match: XP_022955111.1 (coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022955112.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022955113.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022955114.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata])

HSP 1 Score: 276.2 bits (705), Expect = 1.7e-70
Identity = 145/154 (94.16%), Postives = 149/154 (96.75%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFR 60
           MATEEDSVEQVAAAR+ERLRALRAAQELLNAPDEKTSGGED+ENGA  DTEE NL MKFR
Sbjct: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQ+KEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMEEQEKQKQTAEGDDDQNGTEG 155
           LERRTQKALYKLMEEQEKQKQ+AEGDDDQN TEG
Sbjct: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNDTEG 154

[Close]

BLAST of Tan0021089 vs. NCBI nr
Match: KAG6572999.1 (Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 276.2 bits (705), Expect = 1.7e-70
Identity = 145/154 (94.16%), Postives = 149/154 (96.75%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFR 60
           MATEEDSVEQVAAAR+ERLRALRAAQELLNAPDEKTSGGED+ENGA  DTEE NL MKFR
Sbjct: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQ+KEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMEEQEKQKQTAEGDDDQNGTEG 155
           LERRTQKALYKLMEEQEKQKQ+AEGDDDQN TEG
Sbjct: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNDTEG 154

[Close]

BLAST of Tan0021089 vs. NCBI nr
Match: XP_022155130.1 (coiled-coil domain-containing protein 12 isoform X1 [Momordica charantia])

HSP 1 Score: 273.1 bits (697), Expect = 1.5e-69
Identity = 143/154 (92.86%), Postives = 148/154 (96.10%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFR 60
           MATEEDSVEQVAAARKERLRALRAAQELLN PDEKTSGGEDK+NG   DTEETNLSMKFR
Sbjct: 1   MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVA EPPQ+KEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVANEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMEEQEKQKQTAEGDDDQNGTEG 155
           LERRTQKALYKLM+EQEKQK++AEGDD QNGTEG
Sbjct: 121 LERRTQKALYKLMKEQEKQKESAEGDDVQNGTEG 154

[Close]

BLAST of Tan0021089 vs. ExPASy TrEMBL
Match: A0A6J1JYP1 (coiled-coil domain-containing protein 12-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490058 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.2e-71
Identity = 145/154 (94.16%), Postives = 149/154 (96.75%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFR 60
           MATEEDSVEQVAAAR+ERLRALR AQELLNAPDEKTSGGED+ENG   DTEETNL MKFR
Sbjct: 1   MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQ+KEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMEEQEKQKQTAEGDDDQNGTEG 155
           LERRTQKALYKLMEEQEKQKQ+AEGDDDQNGTEG
Sbjct: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNGTEG 154

[Close]

BLAST of Tan0021089 vs. ExPASy TrEMBL
Match: A0A6J1GST8 (coiled-coil domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=LOC111457177 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 8.5e-71
Identity = 145/154 (94.16%), Postives = 149/154 (96.75%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFR 60
           MATEEDSVEQVAAAR+ERLRALRAAQELLNAPDEKTSGGED+ENGA  DTEE NL MKFR
Sbjct: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQ+KEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMEEQEKQKQTAEGDDDQNGTEG 155
           LERRTQKALYKLMEEQEKQKQ+AEGDDDQN TEG
Sbjct: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNDTEG 154

[Close]

BLAST of Tan0021089 vs. ExPASy TrEMBL
Match: A0A6J1DLK0 (coiled-coil domain-containing protein 12 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022269 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 7.2e-70
Identity = 143/154 (92.86%), Postives = 148/154 (96.10%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFR 60
           MATEEDSVEQVAAARKERLRALRAAQELLN PDEKTSGGEDK+NG   DTEETNLSMKFR
Sbjct: 1   MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVA EPPQ+KEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVANEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMEEQEKQKQTAEGDDDQNGTEG 155
           LERRTQKALYKLM+EQEKQK++AEGDD QNGTEG
Sbjct: 121 LERRTQKALYKLMKEQEKQKESAEGDDVQNGTEG 154

[Close]

BLAST of Tan0021089 vs. ExPASy TrEMBL
Match: A0A1S3ATB1 (coiled-coil domain-containing protein 12 OS=Cucumis melo OX=3656 GN=LOC103482658 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.1e-67
Identity = 141/153 (92.16%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFR 60
           MATEEDS EQVAAARKERL+ALRAAQELLNA DEK S GEDKENGAT DT+ETNL+MKFR
Sbjct: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPV TEPPQ KEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMEEQEKQKQTAEGDDDQNGTE 154
           LERRTQKALYKLMEEQEKQKQ AEGDDDQNG E
Sbjct: 121 LERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE 153

[Close]

BLAST of Tan0021089 vs. ExPASy TrEMBL
Match: A0A5D3BJ95 (Coiled-coil domain-containing protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002830 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.1e-67
Identity = 141/153 (92.16%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFR 60
           MATEEDS EQVAAARKERL+ALRAAQELLNA DEK S GEDKENGAT DT+ETNL+MKFR
Sbjct: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQIKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPV TEPPQ KEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMEEQEKQKQTAEGDDDQNGTE 154
           LERRTQKALYKLMEEQEKQKQ AEGDDDQNG E
Sbjct: 121 LERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE 153

[Close]

BLAST of Tan0021089 vs. TAIR 10
Match: AT3G05070.1 (CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Has 292 Blast hits to 292 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 83; Plants - 38; Viruses - 11; Other Eukaryotes - 42 (source: NCBI BLink). )

HSP 1 Score: 177.9 bits (450), Expect = 6.0e-45
Identity = 100/148 (67.57%), Postives = 115/148 (77.70%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATPDTEETNLSMKFR 60
           MA+E++S+EQ AAARKE L+ALRAAQEL           E KE+G     EE   +MKFR
Sbjct: 1   MASEDESIEQKAAARKEALKALRAAQEL----------SETKEDGEDEAVEEDGPAMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQI--KEDPFVNIAPKKPNWDLRRDVQKKL 120
           NYVP  KELQ+GKLAPP LPKFEDP+   PP +  KEDPFVNIAPKKPNWDLRRDVQKKL
Sbjct: 61  NYVPQAKELQDGKLAPPELPKFEDPIVALPPAVEKKEDPFVNIAPKKPNWDLRRDVQKKL 120

Query: 121 DKLERRTQKALYKLMEEQEKQKQTAEGD 147
           DKLERRTQKA++KLMEEQEK+++ AE D
Sbjct: 121 DKLERRTQKAMHKLMEEQEKEREMAEAD 138

The following BLAST results are available for this feature:

BLAST of Tan0021089 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8WUD4	2.3e-12	39.60	Coiled-coil domain-containing protein 12 OS=Homo sapiens OX=9606 GN=CCDC12 PE=1 ...	[more]
Q8R344	3.8e-12	38.93	Coiled-coil domain-containing protein 12 OS=Mus musculus OX=10090 GN=Ccdc12 PE=1...	[more]

BLAST of Tan0021089 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023542240.1	1.2e-71	95.45	coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_0...	[more]
XP_022994277.1	4.6e-71	94.16	coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima] >XP_...	[more]
XP_022955111.1	1.7e-70	94.16	coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022955112...	[more]
KAG6572999.1	1.7e-70	94.16	Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp....	[more]
XP_022155130.1	1.5e-69	92.86	coiled-coil domain-containing protein 12 isoform X1 [Momordica charantia]	[more]

BLAST of Tan0021089 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JYP1	2.2e-71	94.16	coiled-coil domain-containing protein 12-like isoform X1 OS=Cucurbita maxima OX=...	[more]
A0A6J1GST8	8.5e-71	94.16	coiled-coil domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1DLK0	7.2e-70	92.86	coiled-coil domain-containing protein 12 isoform X1 OS=Momordica charantia OX=36...	[more]
A0A1S3ATB1	1.1e-67	92.16	coiled-coil domain-containing protein 12 OS=Cucumis melo OX=3656 GN=LOC103482658...	[more]
A0A5D3BJ95	1.1e-67	92.16	Coiled-coil domain-containing protein 12 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of Tan0021089 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05070.1	6.0e-45	67.57	CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Ha...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 111..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..56
IPR013169	mRNA splicing factor Cwf18-like	PFAM	PF08315	cwf18	coord: 8..133 e-value: 1.6E-35 score: 122.7
IPR013169	mRNA splicing factor Cwf18-like	PANTHER	PTHR31551	PRE-MRNA-SPLICING FACTOR CWF18	coord: 1..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0021089.3	Tan0021089.3	mRNA
Tan0021089.1	Tan0021089.1	mRNA
Tan0021089.2	Tan0021089.2	mRNA
Tan0021089.4	Tan0021089.4	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0071014	post-mRNA release spliceosomal complex
cellular_component	GO:0005684	U2-type spliceosomal complex