Tan0020096.1 (mRNA) Snake gourd v1

Overview


Name	Tan0020096.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	exosome complex component RRP42
Location	LG01: 68356769 .. 68375080 (-)
Sequence length	1517
RNA-Seq Expression	Tan0020096.1
Synteny	Tan0020096.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGACCTGAATCAACCTAATTAGGTCGATTTAATTCAGGTTGTAGACAATCTGGATAGTGCACAGTCTCAAACTTTCGTCTTCTCCTTTCATGTTGTACGATTTTAGCCAAGGAGGAACTGGCGAGTAGAGACGTTCTGGTAAGGTATTTCTTTTTCCCCTTCTATTTTCCTCTTTTTTTTCCTTAATTTCTTTCTTTTCTCCCTTCTTTTGGTTTTGTTTTTTTTTTGTTTCCTTTTTCTTTCTCTGGTCCCCTTTTCCTTTCCCTATAGCAACCACTAAGACCCCCATCTTCCTCTTCTCGTTTTGTCGGCAACCCAACCCCGATTCCCCTTTTTTTTCTTTTCGTTGTCGTCGGTGAGCTCGGGGAACCAAAACCCTCTTCCTTTTCGGTGAGATCGAGACCCACGCGAGCTGGGTATTGTCCAGCGCCCTTCTTAAATACTCCTTCGGATTCGATTAAAGATTTCAAATGGATTATGACCTCTAAACCTTGTCCACATTGCTTAGGAACCTTATCGGCTTGCTTTAGGAGCGCGCAAGAAGTTTAGTAAGTAAATTCTACCTGTGGGGTTGTTTTCTTGTGTGCTAGCATGCTGCGTGCTTAACTTTGTTATATTACACGTATGGCTACTCTTGAATCTATATATAATTTGAGTTGCTCTTGGGCTGGGTGGTTGTTTGAACTGTTGTGGATGTTGAACTTGGTGTGTCACCTTTTTGTGAATAAGCATGTTGCATTGTATTCTTGTGATAAGCGTGTGCTTTGTTGAGATTGGTTTGTTATCATGATATTATGCTTAATGTATTGTGAGCATTGATGGTAAAAGTATATCATAGTTGTTTTATGTAAATTTTTGACATGAACCAGAGCTAGGTGCATAATGTGTAGATTCTATGCATTCTAGCGAGCTCAGGTGAGGTTAGAAACCTTGAATGAGACAAAGGAAAGTTAGGTGAATGCTAGTGCATCTCAAATAAAAATGGTTGAGAAATAGTATGTCACTAACAGATTAAGAGGAGCATCGATGCCTTGGTAACTATGGGCAAGGGTCGGTGTGATGTATCGTGAAGCAAGTATTGGAACCTTGGTAACTATGGGCAAGGGACAATATGTTGCTAGGTTGTCGATGCCTTGGTAACTAGGGGCAAAGGTTGATGATGATACCGAGACCTTGGTAACTATGGACAAGGGGCAATGTGATAAGTTGGAGGCTAGTATTGGAACCTTGGTAACTTTTGGCAAGGACAGTACATTGCGAGGTTGTCGATGCCTTGGTAACTATGGGCAAGGTCGATGAAAATGCCAAGACCTTGGTAACTATGGGCAAGGGTCAGTATGTTAAGTTTGAAGGCAAGTGTTGAAACCTTGGTAACTATGGGCAAGGGTCAATACGTTGTTGAGTCATCGATGCCTTGATTACTATGGGCAAGGGTCGGTGCACAGTTCGAGACCTTGGTAACTATTGACAAGGAATCATACGCCGAACTCTGGATAGATTTGTTGAGGCTCTAAGATAGAGGTTGATGCATCTCGAAGGGTAAGTCTTGGGAGAACTTTATAATGGCTAACTTATGAACGTCGAGTGGTTCAGTGGAGTCTAGCGAGTTTGTGAAGTTTGATTGTAATTCAAGTGTGCATAACTTGATGTATGTTTTGCTTGTTTTATGCATAAAAAACATGTATATTTGAACGTAAGTAGCATGATGTTTGCCTCGTATGCTGTATATTGTTTGATGGCTCCTCAGGTGTGAGCTACTTACCAGTACGTGTTATGTACTGACTCACTCCCAGGTTTTGCAGGTAATGATGAATATGACGACCTTAGTGGTGTAGAAGAGAAGGGATGAGAAGACATACCATAATCGATAGTTATTTACTTAATGGTGCTATTGCTGAGTTAGTTTTACTAAGTTAACTTTGTAGCTACATTGGCTTGAGGTTTTGGTACTGTTGTTGTTTTCCTCTTTAGAGTAGATCTATAAACCGGTTGGTTAGTTTTGAGTTATAGTTAGAAATCGACATGTGAGTTTGTTTTACACTTTTAAAGGTTGACTTGTTTCAAAGTTGATGAGAAAGACATTTCTGGTTGTTGAGCGTTTCTGAATCATTAATTGATTAGTGTCTTGGAGTTTGAATGAGTTATCTGGTTGTTGGGTTTTAGAAGTGTGTTTTTGTTTAAACATGTACTTCTAAAATTTTGGTATTGTTGTAGTTACGTCGTTATGCTGCCGTAATTTTCGGGACATATGGTTGATAGTTTAGTTGTGTTCCCTAGTTTAGACTAATTCTTGGGGTCGTTACAGTTGGTACAGAGCGGAGTTGTTCCTGTAGACTGACCTAGGAAAACTAGGTTGTTAAGTTGTTTTAGGTTTAATGGTCTTTCTCAGTCTCTTCTCCATCACTAAGTATGTTGACCTATATTTGCTGAGATATTGGTTGTGTGGATTGCTTGTTTGGAATGGTTATATATGGCCTACTTATTTGCTTTTTTGGTATGTTTTGTCTTGCATATTGGTTGAAGCTTGTTTGTTAGTAGGCATATGATGCTCCCTTAGTTAGCTAGGCAACTTGTGCTTATCTCGTGGATGTTGTTTGCTAGTAGGCGTAGGATGTTGCCATAGTTGCTAGATAGCTTGTGCTTGGACTTATGCATGTTTGTCGTTGGTAACCTTAAGTTATTGCTTTAAAGTTTAAGTTAGTGCTTTTGTCTTATAGTTTGTTAATGAATTGGCTTCAAGATTTTAACAAGTGAGACCAAGACACTAAGAAACCAAGGAAATTTTCTTAGGAGGCAGTGAAGTTGGGTGAGCTCTTTATTTCGATCCAGACTCTTGGAGAAAATTTGGTTAAGTTGGACAAACAAGATTTAGGCATAAGTGTGGGCATCGATTGATTGACATTTAGCTAAGAAATCATTAGAAGTGTGTTTTTGTTTAAACAAGTACCTGTAAAATTTTGGTATCATTGTAGTTACGTCGTTATGTTGCCGAAGATTTTGGAGACATAATACGTACTTGATAGTTTAGAAGTGTTCCTAGTTTAGACTAATTTTTGGGGCCATTACACACTGGCAGCCTTCAACTCTCACTCTCTCTCGAACTCACTCCAAAGGTAAACGCTGAAGGCCTGTTGCCAGCGAAGCAGCAACAGTCGTCACCGCCCCCTCCCAACGCCACCGTCATCATTCGAGTCGCGCCATCGTCAGTAACATCTTTGTTCTCTTTTTCTTTCCCTTAATCTTCAATCTCTAGTTTATGCTAAAACCCCAATGACCCAACCCTAATTGGCGAAAACAATGTCTAAACCTTCTTCTTCTGGGTTTAACTTCCCGCCGGTTGTGTGTGCTTCACCAGGTTTCTTTTCCTAAAAAGTAGGAATGGTGGGGCTTTCTACGGGAGAAAAGCTTTTCATACAAGGCGGTATTGCTCAGGACCTTCGCACAGATGGTCGAAAGAGACTAACTTATCGACCCATCTCTGTAGAAACTGATGTGATCTCTCAGGTATAATCAAAATGGAGTAGTAATTATGCCTTATTTGCTTGTTCTGTTCTTTCCCTTTATGTGTTTTTATTTCTAAATGATCTTATGTTTAGGCAAATGGTTCAGCAAGGGTCAGAATGGGCGGCACTGAAGTTATTGCTACTGTCAAGGTATAAATGGTTTGAGCTTTGTTCTCTTTGAATTATACTCTTCACCAGTTTTTAACCAAAAGATTGCAATAGCTCTGTTTTTCGTCTGTGAAACTTTAAACTTGGGTTTGGTGGGATGATGACTGCTTAGATATGTTTAAGCAGGCTGAACTTGGAAGGCCTAATGCGTTGCAGCCTGACAAAGGGAAGGTTTCGATCTCTGTTGATTGCAGCCCGATTGCGGAGCCAGCGTTTGAGGTGTGAAAACTTGCTTATTTTCACACATTTTTTTCATTCTTGTGTGTGTAATATATTATACATATTTTAATATAACAAAAATAAATTGAGTTTATTATATGAAATACTATATTTATTAAAGTTTATATATTTTTTAATCTAATTTTCCATTTTAAAATTTCAAATTCAAAATCTAGATACAATTTTTTTTTTTGATGAGAAACATGTGATATCATTTCATTGATGGTATGAAATGTACAAAAGAACGGGTTAAGGAACCCAATTACAAAAGAGAGTCCCAACTATTAACAAGTGAAGTGAGACTGTAATCACAAAAGTGAGGAGTTAATTTACACCAAGAGATAGCTAAGAAGATAATATGGTCGAATAACTTGTGATGATCCCGAGCACAATCTTGGAAGATCCTGTTGTTCCTTTCTATCCAAATGGACCAAAAAAGAGCTTTAATCATATTGTTCCATAAGCATGCTCTATCTTTGGTGAAGGGGTGACCCGGAAGAAGAGCTTCAAGAAGCGTAGCCATCTTGCTTGGGAGGACAAATTGTAATTTGAAGGTTGTGAGGACGGTCCATAATTGGGAAGTGTAACAACAACTGGTAAAAAGGTGGCTCATGGATTCATTGGCTTGCCTACAAAGAACACACCAACTAGGAGATGATACAATCCAAGGAGCCTTTTTCAGAAGAGTATCTGCCGTATTAATGCCTTCGTGGCTTACCTCCCATAGGAAAAAACGAATCTTTTTAGGAGTAGGCCTTTTCCATATGTTGGTGTACAAATCCTTGGAAAGGTGATCGTTGCTAGTTACAACCTTGAAGGAGAGCGATTTTGAAGTGAAAATGCCTGTTGTATCAAGGGTCCATCTCCAAGTGTCAATATTAGTTTGTGTCGAAGGAAGGGGAAGCAAAGATGACAACCTCATCCATTCTGTTATCTCCTCCTCTTTTAAATTCCGATGAAGGCCAAGGTCCCAAGATAAGTTATCCAATCCTCTCATATAATGGAGCCATCCTTCTTCAAGGACAAGGCAAAAAACCGAGGGGCTAAGGCTTTAATGGTATTGCCACCCACCCATTTATCATACCAGAAAGATGGTTGATGGCCATTACCCACAACACTATTAACATTTTCATAAATCAACCCCCTTTTGTGCCATGATGTATTTCCAAGGTCCATGATGATATTTGAGCTTCTTGTGATCCGGATGAAGATCGAAATGTCTGGTTCCATATTTGGCAACAATAAATCTCCTCCATAGGGATGATTTTTCAGAATGAAACCACTAAATCCATTTGGCAAGGAGACTCTTGTTTTTGGCTTTAAGGTCAGTGAGCCCCAAGCCACCTTCAACCAAGGGGCGACAGACCGTTTTCCAGCTTATAGAATGAAAGCCCCTTTTCTCATTGTTGCTATTCCATATGAAGTTTCGGAATAGTTTCTCCAAGGTGTTGACAACCTTCGATGAGATTTTGAAGATGGATAAGTAGTAAGTGGGTAGGTTTGTTAAGGTTGCCTGAATGAGGGTTAACCGACCACCTTTGGATAGGTATGCACCCTTCCATCCTTTGAGCCGTCTCTCAACCTTTTCAATGATAGGAGCCCAAAAGGATTTTGTGTGAAGTTTACCATTCAAAGGGAGCCCTAGGTAAATCATAGGCCAATCAACAATCTTGCAACTGTAATCCCTGGAAAAGTCTGAAATACTTGATGATGGAAGATGAATTCCAATGATCTCAGACTTGTGATGATTGATGGATAGACCAGAAGCCTTTTCAAAGAGCTTGACCGTGTCAAGAAGGGCAGTGATATGCTCTTTGTTTAGAGCGGAGAAAAGGATGGTGTCGTCAGCAAACTGGAGATGATTGATAGTAAGCTTATCATTTCCCACCTCAAAGCCACTAATATGGTCGTTTTGCTCTTCGAGTGATAACAATCTGCTGAGGCAATCAACAATTAGAATAAAAAGGAAGGGGGAGAGGAGAGGGGGTCACTTTGCCAGAGACCCCTAAAAGCAATAATCTTTCCTCTAGGCCGCCCATTAAGAATAATGGAGAAATTTGCAGAAGAAATACAACCATGAATCCACTTTTTCCCGGTGTTCCCAAATCCTTTTTTAGCAAGGATAAGGTTTAGGAAGTCCCAATCCACCTTATCGAAGGCCTTTTCAAAGTCAAGCTTAATAACAATACCTTGCTTCTTACGCTTGTAATAATCTTCAATAAGCTCATTTGCAATGAGGGAAGCATCAATGATCTGTCATCCAACCACAAAGGCGAATTGAGATTCAGAAATAGTATGAGGAAGAACCCTTTTGAGCCGTTCAAAAAGGACTCTAGTAATCACTTTATAGAGGCCCGTGGTGAGACTGATTGGCCTGTAGTCCCCTACAGATTTAGCATCTACTTTTTAGGTGTGAGGTAAATGTAAGTTTCATTCAAGTTTGCATTTACAATGCCCTTAGACGGACTAGGAGACCAAACCCCTCTGATCGGAGATAGTGGGACTAGTCCCACTCCCTCCAAAAACTCGTGATTAGTGAGAGGATGGTGAAAACCTAATGAAAGTGAAGAGGATGAATCAAAGGTTGACAAGATAGAGGCCACTGAGTGTAACCTCTTATTAGAAAATTGATAAATGCGGGAAAATAATTCACAAATAGGCTTAACACCCACCTACTAATCCTCTAAAAAATAAATATCAGACTCGTCTCCAATAAAGTATTTAACGAAATAGGAAAACACAGGAAAACCCAAAGCTATGGTCAGCTTGAAAATCTCCAAAGTTTGGCCTTCAAAATAATCTTTGATCACCTATAAATATAAAAGAAATGCATGAATTAAAACCCAAAAACTATAAGGGGTTGTTTGGGGCGCTGAGTGGGTTATAATAGTCTGTGGGTCATTATAGTCTGTGGAATCATATAATATTATTTAAAATGCAGAGTATTATAATCTGGGGTTATAATAGTCTGTGTTTAAGGTGCAAAATATTCCACAAGTTATAATAACATATGTTATTATAACTTGTGCCCCAAACAGACCCTAAGAAATCTAACTAAAAACAACCAAAACAAGACATAACACATAACTATAAAATAAACTTATCAAGTACGCTTATTCGAGGCAAAGATGTAAATGCAATTGGTTGAAGAGGGAGACAAAAAACTAAGTTCTTTCATCGGTTTCTGGCTGCACGTAAAAGGAAGAATTCAATTTCTGAGTTGTTTTCTCGTGATGGGATGAGTTTTTTAGCGACCAATGTTATAGAGATGGAGTTCATCGATTTCTATTCGAAGTTGTTTACAAAAGACTCTAATGTACAGTTTCTACCTACCAATCTTGATTGGGGTAGTATAAGTATTTCACAACCAACTTCTTTGGAAACTCCATTCACTGGAGAGAAGGTTTACCTTGCTGTACAATCATTTGGTTTAGGTAAGTCACCTGGTCCGAATGGGTTTACTGCTGATTTTTTTAAACATTCTTGGACCACCATCAAACAGGATATTACGACAATGATGCAAGCCTATTTGTAATTACCCTTTGGGGGGTGTTTAGTTTATGGGGTTGGGTTGGGTTGAGTTGAGTTAATAACTCAACTCCTTGTTTGGCCCACCAACAATTATAACCGGTGACTTAATAACTCAACCCCATGGAGTTGAGTTATTAACTCAATTGTATGGTACTTTCCGATGGTGGTCCGACGACTTTCTGACGACAACCCGACGGTGGCCCGACGACTTCCCAATGACGGTCCGGCGAGATGAAGAAAGTGGAGAAAAGTAGAAGAATGAGAAGAAGATGAGAGTTTTGAAGCGTGCCTTTAAGTTGCTAATACTCTAGTTTAAATAGGCACCAAAAGTCCTAATTCTTTTAGAATAAGGAATTCTAATCCTTTTTTAAACTTTAAACCACCCTTTCCTAATCCTGATTTGATTATCCAAATATTCAAATTTAAAACAAATACAATTAAAGAACCCAATTTTACGGGGTGTCACAATATACCCATCTAAGAAAAACTTTCGTCCTCGAAAGTTGCTAGAACATTACAACAACCACGTCCTCGAATCATAATCTAAACTTAAACTCTAAATACCTTAGCACAAGAACAAAGAAGTCAAAAGCATAGCATAACAAGTATTAACACACAAGCAACTCAAATAACTTTAACTACTTTACAAAATAAAAGTGGAGATGACGAGGTGACTTCCTGCGAGAGGCTATAAGGATCGTTGTCTACGATGTAGGCGAGTATGCAGAATCTAAAACTCATGCTCTGATACCAACTGTAACGACCCTAATTTTTCAAACCCAAAATTTCCTAGGGACATTACTAAGCAACACCGCCTGCACCAAAAATTTCGACAGCATAATGGCGCTGTTTGGACCTTGATGACATATCTAATATTTTGTAGATATGTAACTTCAATATGACATAAAATATTTAAATATGTTGGCATATTTTTAACACCTTCATAAGGTAAACTATTTATTCCATTCTAAAGATGTCCATAGACAATGCATGTGTTTAGACAAATTTAAATAAACACTCTTCATATGTAAAGTATTAATACTAATACCTAACTAAATTAAAATAAAAAAGTAGTGGTGAACATGTGCATAAAAAAAGAAATAAAGTTCATATTGAAGAGTAAAAGTTCTAAATAATGAATTTTATTGGAAAAGAAATATTGATATCAACCCCAATATCCATTACTTTTGCAAATATCCCTAACATACATTTGGAAAATGGTAATATATATTGTAATTTTATAATTGATCACATAATTGAGTTTTGAAATTGTAGACAAATGTGTTTGTATTTGATTTGTAGACAATGAACACACGTTTTTCTTGCAAAGTATTCATATTATACCTAAGTACTTGTGACAAAATAGCTAAGTACTTAATTGGAGTAATGGTGAACATGTGTTTCAAAAGAAGAAACTCCTTCATATGGAAGAATATGTTCTCAATAACATAAGATAAAAATGAATTTTATTGGAAAAGAAAAATTGATATCAATTCAAATATTCAGTACTTTTCTAAATATCCCATAAATCTTGCAAATGGTAATATATATGGTAAATTTGTAGTTGATCTCATTATGAAGTTTTGAAATTATAGACAAATATGTTTGCAATTAATTTGGTGGAAACAAAAAATGTAAGAAAAAAGTCACAAAAAATCATACTTATACACTTTACAAAAAACTGCACCAGATATCCCTGATATAATAACTCAACTCTGCACCCCAAACACTGACTTCCTGACTCAACTCAACTCAACTCTGCACCCCAAACACTGATTTCCAGAACTCACTGACAAAACAACTCAACTCAACCCAACTCAACCTAACTTTGCGATCCAAATGCCCCCTTAGACTTTATTTTGCTTGGGTGAAACATTTTGTTGTAAGCCCCCCCTTGTTTTTTGTGGGCTTGTTTTTTGTACGCTTCTTTCATTTTTTCTCAATGAAAGCTTGGTTTTTCATAAAAAAAAGACATTGGGATTATTAATGTGGCACTGAACGATACTTATATTTGTGTCATCCCTAAGAGAATGGACACTAGAACTGATTATCACCCCATTAGCCCCCTCCCTTGTGCTTATATGATTCTTGCTTGTGTTTAATCTAATCGGTTAAACCAAGTTCTTCCTTTACTATTGTTGATAATCAAATGGCTTTTGTGTCTAGTCGACAAATTTTGGACGCTTATCTAATTCCAAATGAATTGATTGATGATTGGAATAATTCTAATACGGAAGGAGTGATCATTAAGCTAGACTTGGAAAAAGTTTTTGATAAAGTTGGTCGGGATTTTCTGGATGGAGTTCTACTGGCCAAAGATTTTGAGATTGTTTGGAGGAAATAGTTTTGAGGTCACATATTTATTGCTAACTATTCAATTATTATTAATGGGCAACCATTAATAATATTATCCAAAAAAATCTTCCTTACAAGGGTGTATTTGACAAGTTGACCCACTCTCACCTTTACTTTTTATTTTGGTCTTAGATTGTCTTAGTCGTTTATTGTCTCATAGTGCTCTTCTGAGAGAGATTGTGTCCCATTCAATTGGAACATTTTCACTTGGTTTGAACCATTTGCAATTTGCAGATGATGCTTTGTTATTCTCTACCGTGGATTTTGTCGCTCTGGATAATCTTTTCAATGTTGTTGAAGTATTTGAGCGGGCTTCTTGCTCGATTATTAATTTCAATTAGAGTGAAATGTTGGGTATAAATACTTGTGTTTTAGAATTGGAAGCTTTGGCTTCAAAGTTTTGTTCTAAACAAGTAGCCTAACCTACCACATATCTCGGTCTTCCTTTAGGGGTAATCCTAAATTTTCTTCATTTTGGCGATCGGTTTTAGAGAGAATTCAGCAAAAACTTCACATTGGAAGTACACATACATCTCAAAAGGTGGTAGGTTAACCCTTGTACAGGCTACTCTATCTAGTATGACTACTTACCATCTTTCTCTTTTTAAATTACCATAAAAGATAGCAAAAGATTTGGATAAGCTCATTAGAGATTTCTTGTGGGAAGGTTTGACAGGTGATGGTGGTAGTTTGCATACTATTATTTGGGAGAAGACTCAACTTCCCCAACTTATGGGAGGCCTTGGTATTGGAAATTTCCAGCTTAGAAATTTGGCTCTTTTGGCTTAGCGAATTTGGAGATTTTTGCATGAACTTGATGCCCTTTGGAGAAAAGTTATAGTGGCTAAATACTATTAAGGAGATGTTTTCTATGATTCGTCAAAAGTAAATTAATCGTGGGTCCTTTAAGTCTCTTGGCAGATATATCTGTAGCACCATAGACATTTTTGCAGCTGTAATCTTAAAAAACTTGGCAATGGTATGCATTCATCTTTTTGGAATGATTTGTGGCTTGATGCTTCTATTAAATTAACTTTTCTAAGGCTTTATTGTTTATCTACTCGTCCTCTTGATTTGGTTGCACATATTTGGAATCCATATAATGACGCTTGGAATTTTGGACTTCGGGGAATTCTTAATGACAAGGAGTTTCTTGAATGGGCCAGTATCACATCTTCTTTCTTCGAATACTTTGAGAAATGTACAAGATTCTTGGTTTTGGTCATTGGATCCTTCACATGCCTTTACCGTTGATGGAAGATTTAGTGCATAAAAGGTCCAACTAAGAACAATCTTTTCTCGATAATTTGGAAGGACAAGTATCCAAGGAAAATCAAATTTTCTTATGGGACCTTAGCCATGGTGGAATTAATACAGCTGATAGACTACAAAGAAGAATGCTTGTGACCCCCAATTACTCAAATGCACCAACGTAAGGGCAAGAAAGGAATTGCATCGGGGAATTAGTTAGTTATGGGGAGGGCGTGAGAGTTGATCCTGTGGGGTCCACGGTAGTGTTTGGGAGTGAGGGCCTATATGGTTGGATAAAGGTCTTTTGTTAGTTTTTCATGTTTTTGAAGATTTTGCTTAGGAGAGTAAGGGAGAGAAAACCAACTTGCTTAATTGGTGGAAGTTTTTGTATTGCATTAGGGCTTCACTTTTCTTTGATTTCTCAATAATAGTAAGGGGATTCCTTCTTTCAACCTGGGGAAATCGAGGAACCAAAACAGAGGGATATGGAAGAAAGGATGGATTATGCCGATCGTGAGCGTCGAGCTCTAAGGGTATAGATGGAAGGAATTCATGAGAGAGTGTTGTGAATTCTATTAATGGAGGAGGGCATAACATCACTGAACAAATTGGTAGCAATGTTAGCAATAGAGCTGCGAACCCGGTCGAGGATCTCTGAGGTCAGTGATAACTCAACATTAAAGCAGAAAGGGTTGGAAGATTTGGGATTGTTGTCTTCGACTCAAGTGGAGGAAACTAAGGTCATTGCAGGAAGCCATGAGGAATCGATGGGAGATCGGAGCAAGTTTAAAAAAGTGGAGATGCCTATTTTCGGAGGAGAAGACCTGGATTCCTGGCTTTTTCGAGCCCGTTGGTATTTCCAGATTCATAAATATACTGATTCAGAGAAGATGACAATCACTGTCATTAGTTTCGAAGGGGTGTCGTTGAACTGCTGGAAGGAAGAAAGAGTGTCGTTCACTGGATGGGAAGATCTAAAACTTCGACTACTCGCACGCTTTAGAAAGGCCAAAAAAGGGAACGTGTTAAGTCGATTCTTAGCCGTCAAACAAGAAGGTATGGTATTGGAATATTGTAATGAATTTGAATTGCTAATGGCTCCGCTTGTGCAGCTGTCGAAGGACGTGATAGAGAACACCTTCATGAATGGTCTGAAATCGGTGATTAAGGCGGAGGTTCAGTGCCGACGGCTGGTAGGGCTTGACGATATGATGAAGACGACCCAATTGGTAGAAGATCGGGACCAAGCTCGCTTGGATAAACTTCGCAAGTTTAAAATAGGCCCAGCGAGCCCAAAAGGGGAACCCAAAACTCCAGATCCGGTTTAGTTAATGGTGTAAACCCACGACCCTTGGAATCGATAGCTATCAAAATGATAACGTTGACTGGAAATTCGACAATGACTGCAAGACGAGAGGGACCAACAAAAAGGTTGTCGGACACAAAATTTCAAAGTCGAAAAGAGTGAGGGCAGTGCCGCTGTGAGGATACACAGTAGGCCATAAGTGCAAAGCCAAAGAACTGAGAACCATGGTTGTTCAGGAGAACGGGGAAGAAATGGAAATCATTGATGGTGGGGTAGTCAACTCTGAGAAGGAAGCGAAGTTTACTGAGGAAGAGGGTGACGCCACCCATTTATCCTTGAATTCAGTAGTGGGAATGACGAATCCGGGAACAATCAAGCTAAAGGGAAAAGTGATGGACCAAGTGGTCATGGTGTTGATAGATTGCAGAGCAACTCACAATTTTATTGCTTAGAAGTCAGTCGATTTGCTGAAGTTACCTTTGACTGAAACAACAAATTATGGTATTATTATGGGAGGGGGAGTGGCGGTACAAGGGAAGAGAGTGTGTAAGGGCGTAGTAGTTAATATGGGAAAGATCACGGTGATTGAGAGTTTCCTGTCATTGGAATTGGGTGGCATTGATGTGATGCGGGAATGCAGTGGTTACATTACATACCTTGGGGGAAACGAGCATCCATTGGCCTACCTTAACGATTAAAATAGTAATGGGGGACGAGGAAATTGTTCTAAAGGGAGATCCCATCCCAACAAAGTCTCGAGTTTTGCTGAAAAAGATGATGAAGTCGTGGGAAGTAAGTGACCAAGGTTCCCTGGTGGAATTTAAAGCTATAGAGGTTGAGGACCATATAGAGGAAAGAAAGCAGGATCCATATCAAAGTGATTGTTCTCCAACCGTAGAAAAGTTGCTTGAGAAGTTTGATGATACTTTCCAATGGTCAGAAGGTTTACCACCAAAGAGGGAAATTGAACATCATATTCCCGTGAAAGAGGGATCTTATACGGTGAATGTGAGGCCTTATCGATATGCACAAGTACAGAAAGGGGAGATTGAGAGGTTGGTGAATGAAATGTTGCAAGCAGGAATCATACAACCCAACTCTAGCCTGTTCTCAAGTCCTGTGATATTAGTAAGAAAGAAAGATGGAGGATGACATTTTTGTGTGTATTATCGAGGACTCAATAGCGTAACCATCCCAGACAAGTTCCCAATTCCTATGGTAAAGGAGTTACTGGATGAATTGAATGGTTCGAGCATATATTCGGAGGTGGATCTGACATCGGGATATCACCAAATTAGAATGAATAATTCAGATATTGCAAAGACAACGTTTTGAACTCACAAGGGTCATTATGAGTTTTTAGTAATGCCATTTGGGCTAACAAATGCTCCATCCACATTCCAGGCATTGATGAATCAAATATTCCGACCTTACCTCCGTAAGTTTATTCTGGTTTTCTTTGACAATAGACTTATCTATAGTAGAAGCCACTGTGAACATCTGAAACACTTGACTATAGTTTTTGAGGTGCTTGACGAGAATAAGTAGTACGCCAACAAAAAAGACGTGCCAATTTACACGAACTAAAGTTGAATACTTAGGCCATTGGATATTTGAGGAGGGAGTAGAGGTCGAGGCAAGTAAAGTACAAGCAATGTGGCAATGGCCAGAGTCGAAGTCCATCAAAGACCTTAGAGGTTTTCTGGCTTTAATGGGATATTACCGTCGATTTGTGCAAAATTACGGTTCCATCGCAGCTCCTCTTATGAGTTTATTAAAAAGGGGGGGCGTATAAATGGAGTGACGAGGCAAGCAAAGCATTTGAACGTCGCAAGAGAGCGATGGTAACATTACCCGTGTTAGTATTACCTGATTTCAACCGACCTTTCACGATCGAACAGGGGTTGGGTTAAAGGTTGTTTTAAACCAGGGGGAACGTTCAATTGTGTTATGTAGTCAAACCTTGAGTCCATATATGAAAGAGAATTAATGACCATCGTCTTTAACGTGCAACATTGGCGACCATATTTACTAGGGGATAAATTCACGGTAAAAACTGATCAGAAAGCTCTTAAGTTCTTACTGGATCAGCATACTATCCAACCTTAGTATCATAAATGGGTGGCAAAACTATTGGGGTATGATTTTGAAGTTTAGTACAAGCCAAGTTTTCGGAACAAAACTGCTGATGCACTATCACGGCTACCCCAAAGAGCTCAATTGGCCCACATATCCATTCCCTTCATCTTAGATATCGAGAAGGTGTGAGAGAGGAGGTAGAGGCTGACCCCAAACTGCAACAAATCATAGCACGACTGCAGAGTGACGAGGATAGTGTTCCAAAATTCTCTTGGTCACTAGGGACTTTGTCGTATAAAGGGAGGTTAGTGATATCTAAATCATTGTCTTGAATCCCAGTTGTCCTCCACTCTTACCATGGCTCAGTTTTGGGTGGTCACTCGGGGTTCCGTATAAGCGACTCACCGGAGAACTATATTGGGAAGGCTTGAAGGTCGATACTAAGAATTATGTCGCTCAATGTATGATTTGCTAGAAAAATAAGACTTTGGTAGCATCTCTCGGATCGCATATGGGAGCATTTGTCAATGGATTTCATTGAGGGATTTTCCGGATTAGCAGGTTTGGATAAGATCATGGTAGTAGTCGATCGATCGAGTAAAATGACACATTTTGTAGTTTTAAAACCTCCTTTTACAATGAAGATAGTAGCTGAAAGTTTCATTAAAGAAATAGTTCGATTGCATGGGTACCCACGATCCATTGTTTCGGACAGAGACAAGGTATTCGTGAGTTACTTTTAGTCTGAACTATTTGGGGTACAAGACACAAAACTATGTAGAAGTACAACGTCTCACCCTCAATCGGATGGCCAAACTGAAATTGTGAACAAATGCGTGGAAGCTTGCGTTGTTTTTGCCGTGAAAAACCAAAAGAATGGAGTAAATGGTTACATTAGTACATTGGGCAGAATATGGTTACATTGGGCAGAATACTGGTATAATACCATGTATCACATATCCATTGGAGTTACACCTTTCCAAGCCGTCTATGGGTGACCTCCTCCATTATTGTCTTATGGAACTACTAGGACAACTAATGAAGCATTGGAACAACACTTAATGGATAGGGATGCCACTTTAGATGCCTTGAAAAGTCACTTGTGTTTGACTAGAGAGAGGATGAAGAAGTTTGCAGACAAACGGAGGTGCGAGGTCCAATATGAGGTAGGTGACATGGTTTTCTTGAAGCTCAGACCCTATTGTCAAGCATCATTAGCGAAGAAGAGGAATGAGAAATTTTCCCCGAAGTACTTTGGTCCTTACCAAATTGAGGAGAAGATTGGAGTAGTGGCTTATCGGCTTAAACTTCCACCTTCGGTATCATGCATCCGGTTTTTCACGTTTCACAGCTGAAACTAGCCATTGGTACTCAGCATGTTGTGCTAGAGGACCATCCCGAGCTGATTGATAATTTCGAATGGCTGGCAGAGCCAGTGAGACACGGGAGAAGATGAAGCCTTGATAAGTTGGAAAGGGCCTACTGGAGCATGAAGCAACTTGGGAACCTATATCGCACATGAGACAACAATTCCCTCTTTTCAATCTTGAGGACAAGGTTTCTTGGTACCAGGGGAGTAATGTGAGACCCCCAATTACTCAAGTGTACCAATGTAAGGGCAATAAAGGAATTGCACCGGGAATTAGTTAGTTATGGGGAGGGCGTGAGAGTTGATCCTGTGGGGTCCACTGTAGTGTTTGGGAGTGAGGCCCTACATGGTTAGATAGAGGTCTTTTGTTAGTTTTTCATGTTTTTGAAGATTTTGCTTAGGAGAGCAGAGGAGAGTAAACCAGCTTGCTTAATTGCTGGAAATTTTGTATTGCCTTAGGGCTTCACTTTTCTTTGATTTCTCAATAATAGTAAGAGGATTCCTTACAGAATGCCTTACTTCTTCCTCTCCATCTTATGGTGTGTTATGTGTTTTTTCAAAGGCGGAGTGTCCTATCCACCTTTTTGCATGTTGTTCTTTTGCTTCTCAGTATTGGTGCCCATTTGGTGGAAGCATTTGGTTGGCAATTGGTTTTTCCGGGAACTATATTTGATCTTCTTGCTTTAGTGTTTGTGGGACATCCTTTTCATGGGATTAAAAAGACTCTTTGGCTAGCCATCAATCGAGTATTCACTTGGTATATGTGGTGTGAGCATAATAATGACAGAATTTTCAGGGATGTTTCTTTAAGCTCTAGTGGTTTTATGAAATGAATTTTGTTCAACGCTTTTTATGGGTGTAAATGTAAACACCACTTTAGTGATTATAGTCTTTCTACTTTACTCTCCAATTAGACTTCTTTCTTGTAAGTCTCTTGTATCTAGGGTTTTGCCTCCTTTTATTTTATTTATCAATGAAATCGATCTCTTCTCAAAAAGAAAATTTACAATAAAAATTGTTAAAACAACTGGTATCCAGGTGCATCACATCAACTTGTGTAGTTTCTTTTCCATATGTGCTTTTTGCTACGCTTGTAATATTTGGTTTTTCACTGAATAAGGGTAGAGGCGGTGAAGAGTTGTCAACAGAACTCTCGGTTGCCCTTGAGCGATGTCTCTTAGGAGGAAAAAGTGGTGCAGGTTTGACTCGGCACTAGAAAAGTAGATCGATGGTATTTGCTTCCTTTGTTTGGATCAGTGACTTTTGCCGTTGATAACAAACATGCTTTTTTTTTACCTCAGGGGCTGGGATTGACCTTTCATCTCTGATAGTTGTGGAAGGGAAGCTTTGCTGGGATCTTTATATTGAGGGCCTTGTCGTAAGCTCAGATGGCAATCTTCTAGATGCCCTTGGTGCTGCCATTAAGGTATATTTTCATCCGTGACTTTTGTTTACTCTTCTATGTGTCATTTATGAACTTAAATAACCAGATTTTGCACTTATTGTTTATACTTCATAAGGCTGCATGACCATATAAGCTTTGCTTGTTTAACTAAAGCAATGTCGAATAAACATCAATATTATGTTCATGTATGGTCTGCTTATATCTGTCATTGTTTCTAACTGAGCAAGTCACTTTTGGCGACCGAAGTCCCTTGAGACTATTTGTCTCTTTCAATTTCAAGATTCTCGATAGTTTGTCCTTATATAGGACTCTACTAAAAGATATGAACCTTGATATTTTACTAGATCTTTTAATAATCACAGTTGCTATACAATATCCTGCTGGTAGTTAAAGCTGAAACTAATAAACCCCTCAAACTGTCCTTCCCAAGGCTGCTTTGAGCAATACAGGCATCCCAAAAGTCCATGTTGCTGCAGAAGCATCAGCCAACGAACAACCCGAAGTTGACATAAGCGATGAAGAATTTCTACAGTTCGACACGTCCGGGGTTCCAGCCATAGTTACATTGACAAAGGTGGGTAGACACTACGTCGTGGATGCTACTTTGGAAGAGGAATCTCAAATGAGCTCTGCATTCTCCATATCCATCAACAGGCATGGTCACGTCTGTGGGTTGACCAAACGAGGGGGTGCCGGGGTTGATCCAAGCATAATCCTTGACATGATATCCGTGGGCAAACATGTGAGCGAGCAGCTACTAAACAAGTTGGATTCAGAGATAGCGGCTGCTGAAGCTGATGAAGAAGAATGATAAAGGTTTTAGATCAGATCTCTGATTGTTGTTCATTTACATAGTGGAATCTTAGAATAACCATCTGAATTGGAATTCTAGTCTAGATGGTATAGATGATTGTAAGGCAGTGAGCTTGTAAAATTAGCAGTTTTTTTAGTCATTTGGTTCTGTCATGGCATTTGATCCCAGTTTAATTGTGTTCAATATGAGAAAATGCAGGGCAGATGTTGAATCACGTGTAATTGCAGCTAGACATTATGAATTTAGACAACTTATTTCATAGAACTATTCATGATACCTTAGAAATGGGAGCAAATTGAGGTTGTTGATTT

mRNA sequence

GAGACCTGAATCAACCTAATTAGGTCGATTTAATTCAGGTTGTAGACAATCTGGATAGTGCACAGTCTCAAACTTTCGTCTTCTCCTTTCATGTTGTACGATTTTAGCCAAGGAGGAACTGGCGAGTAGAGACGTTCTGGTAAGGAACCTTATCGGCTTGCTTTAGGAGCGCGCAAGAAGTTTAGTTTTGCAGCCTTCAACTCTCACTCTCTCTCGAACTCACTCCAAAGGTAAACGCTGAAGGCCTGTTGCCAGCGAAGCAGCAACAGTCGTCACCGCCCCCTCCCAACGCCACCGTCATCATTCGAGTCGCGCCATCGTTTCTTTTCCTAAAAAGTAGGAATGGTGGGGCTTTCTACGGGAGAAAAGCTTTTCATACAAGGCGGTATTGCTCAGGACCTTCGCACAGATGGTCGAAAGAGACTAACTTATCGACCCATCTCTGTAGAAACTGATGTGATCTCTCAGGCAAATGGTTCAGCAAGGGTCAGAATGGGCGGCACTGAAGTTATTGCTACTGTCAAGGCTGAACTTGGAAGGCCTAATGCGTTGCAGCCTGACAAAGGGAAGGTTTCGATCTCTGTTGATTGCAGCCCGATTGCGGAGCCAGCGTTTGAGGGTAGAGGCGGTGAAGAGTTGTCAACAGAACTCTCGGTTGCCCTTGAGCGATGTCTCTTAGGAGGAAAAAGTGGTGCAGGGGCTGGGATTGACCTTTCATCTCTGATAGTTGTGGAAGGGAAGCTTTGCTGGGATCTTTATATTGAGGGCCTTGTCGTAAGCTCAGATGGCAATCTTCTAGATGCCCTTGGTGCTGCCATTAAGGCTGCTTTGAGCAATACAGGCATCCCAAAAGTCCATGTTGCTGCAGAAGCATCAGCCAACGAACAACCCGAAGTTGACATAAGCGATGAAGAATTTCTACAGTTCGACACGTCCGGGGTTCCAGCCATAGTTACATTGACAAAGGTGGGTAGACACTACGTCGTGGATGCTACTTTGGAAGAGGAATCTCAAATGAGCTCTGCATTCTCCATATCCATCAACAGGCATGGTCACGTCTGTGGGTTGACCAAACGAGGGGGTGCCGGGGTTGATCCAAGCATAATCCTTGACATGATATCCGTGGGCAAACATGTGAGCGAGCAGCTACTAAACAAGTTGGATTCAGAGATAGCGGCTGCTGAAGCTGATGAAGAAGAATGATAAAGGTTTTAGATCAGATCTCTGATTGTTGTTCATTTACATAGTGGAATCTTAGAATAACCATCTGAATTGGAATTCTAGTCTAGATGGTATAGATGATTGTAAGGCAGTGAGCTTGTAAAATTAGCAGTTTTTTTAGTCATTTGGTTCTGTCATGGCATTTGATCCCAGTTTAATTGTGTTCAATATGAGAAAATGCAGGGCAGATGTTGAATCACGTGTAATTGCAGCTAGACATTATGAATTTAGACAACTTATTTCATAGAACTATTCATGATACCTTAGAAATGGGAGCAAATTGAGGTTGTTGATTT

Coding sequence (CDS)

ATGGTGGGGCTTTCTACGGGAGAAAAGCTTTTCATACAAGGCGGTATTGCTCAGGACCTTCGCACAGATGGTCGAAAGAGACTAACTTATCGACCCATCTCTGTAGAAACTGATGTGATCTCTCAGGCAAATGGTTCAGCAAGGGTCAGAATGGGCGGCACTGAAGTTATTGCTACTGTCAAGGCTGAACTTGGAAGGCCTAATGCGTTGCAGCCTGACAAAGGGAAGGTTTCGATCTCTGTTGATTGCAGCCCGATTGCGGAGCCAGCGTTTGAGGGTAGAGGCGGTGAAGAGTTGTCAACAGAACTCTCGGTTGCCCTTGAGCGATGTCTCTTAGGAGGAAAAAGTGGTGCAGGGGCTGGGATTGACCTTTCATCTCTGATAGTTGTGGAAGGGAAGCTTTGCTGGGATCTTTATATTGAGGGCCTTGTCGTAAGCTCAGATGGCAATCTTCTAGATGCCCTTGGTGCTGCCATTAAGGCTGCTTTGAGCAATACAGGCATCCCAAAAGTCCATGTTGCTGCAGAAGCATCAGCCAACGAACAACCCGAAGTTGACATAAGCGATGAAGAATTTCTACAGTTCGACACGTCCGGGGTTCCAGCCATAGTTACATTGACAAAGGTGGGTAGACACTACGTCGTGGATGCTACTTTGGAAGAGGAATCTCAAATGAGCTCTGCATTCTCCATATCCATCAACAGGCATGGTCACGTCTGTGGGTTGACCAAACGAGGGGGTGCCGGGGTTGATCCAAGCATAATCCTTGACATGATATCCGTGGGCAAACATGTGAGCGAGCAGCTACTAAACAAGTTGGATTCAGAGATAGCGGCTGCTGAAGCTGATGAAGAAGAATGA

Protein sequence

MVGLSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAELGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGAGIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASANEQPEVDISDEEFLQFDTSGVPAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVCGLTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE

Homology

[Close]

BLAST of Tan0020096.1 vs. ExPASy Swiss-Prot
Match: Q15024 (Exosome complex component RRP42 OS=Homo sapiens OX=9606 GN=EXOSC7 PE=1 SV=3)

HSP 1 Score: 204.5 bits (519), Expect = 1.6e-51
Identity = 112/281 (39.86%), Postives = 167/281 (59.43%), Query Frame = 0


Query: 2   VGLSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATVK 61
           V LS  EK++I  G+ +DLR DGR    YR + VETDV+S  +GSARV++G T+++  VK
Sbjct: 4   VTLSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVK 63

Query: 62  AELGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGAG 121
           AE+G P   +P++G +   VDCS  A P FEGRGG++L TE++  L R +   KS     
Sbjct: 64  AEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR-IFNNKS----S 123

Query: 122 IDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASANE 181
           +DL +L +   + CW LY++ L++   GNL DA+  A+KAAL NT IP+V V  +   ++
Sbjct: 124 VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSK 183

Query: 182 QPEVDISDEEFLQFDTSGVPAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVCG 241
             E+     + ++     VP IVTL K+G  +VVDATL+EE+   ++  +S+   G V  
Sbjct: 184 DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTC 243

Query: 242 LTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEA 283
           + K G   +DP  I +M+  GK V + L   L S +   E+
Sbjct: 244 MRKVGKGSLDPESIFEMMETGKRVGKVLHASLQSVVHKEES 279

[Close]

BLAST of Tan0020096.1 vs. ExPASy Swiss-Prot
Match: Q9D0M0 (Exosome complex exonuclease RRP42 OS=Mus musculus OX=10090 GN=Exosc7 PE=1 SV=2)

HSP 1 Score: 199.9 bits (507), Expect = 3.9e-50
Identity = 112/281 (39.86%), Postives = 165/281 (58.72%), Query Frame = 0


Query: 2   VGLSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATVK 61
           V LS  EK++I  G+ +DLR DGR    YR + VETDV+S  +GSARV++G T+++  VK
Sbjct: 4   VALSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVK 63

Query: 62  AELGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGAG 121
           AE+G P   +P++G +   VDCS  A P FEGRGG++L TE++  L R +   KS     
Sbjct: 64  AEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR-IFNNKS----S 123

Query: 122 IDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASANE 181
           +DL SL +   + CW LY++ L++   GNL DA+  A+KAAL NT IP+V V  +    +
Sbjct: 124 VDLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGAK 183

Query: 182 QPEVDISDEEFLQFDTSGVPAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVCG 241
             E+     + ++     VP IVTL K+G  +VVDATL+EE+   ++  +S+   G V  
Sbjct: 184 DIELSDDPYDCIRLSVENVPCIVTLCKIGCRHVVDATLQEEACSLASLLVSVTSKGVVTC 243

Query: 242 LTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEA 283
           + K G   +DP  I +M+   K V + L   L S +   E+
Sbjct: 244 MRKVGKGSLDPESIFEMMESSKRVGKVLHVSLQSLLHKEES 279

[Close]

BLAST of Tan0020096.1 vs. ExPASy Swiss-Prot
Match: Q54VM4 (Putative exosome complex exonuclease RRP42 OS=Dictyostelium discoideum OX=44689 GN=exosc7 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 4.2e-44
Identity = 115/319 (36.05%), Postives = 160/319 (50.16%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M  +S  E LFIQ G+  ++R+DGR R+ YR  ++ET  I  ANGSARV++  TEV+  V
Sbjct: 1   MQKISPSESLFIQQGVENNIRSDGRNRVDYRNFAIETGEIIHANGSARVKLSQTEVLVGV 60

Query: 61  KAELGR------PNALQPDKGK-VSISVDCSPIAEPAFEGRGGEELSTELSVALERCLL- 120
           KAE+         N  Q D  K +  SV+C P A P FEG+G E L+ ELS  LER    
Sbjct: 61  KAEITHIQSEITSNLQQSDTSKRLVFSVNCCPSASPEFEGKGSEFLNIELSKQLERLYSH 120

Query: 121 ----------------------------GGKSGAGAGI------DLSSLIVVEGKLCWDL 180
                                        GK     G       D +   +V GK  W L
Sbjct: 121 PNVIKNLKLTNPIISNNNNNNNKIKEAEEGKEKEKEGDIITNSGDDNCFSIVSGKYYWTL 180

Query: 181 YIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASANEQPEVDISDEEFLQFDTS 240
           Y++ +V+ SDGNL DAL  A ++AL NT IP+V            EV    E+ L     
Sbjct: 181 YVDAIVLDSDGNLFDALSIACRSALQNTRIPRVKAIQGEYEEITFEVSDDPEDTLSLSID 240

Query: 241 GVPAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVCGLTKRGGAGVDPSIILDM 278
            VP  VTLTK+G  +V+D TL+EE  M++  ++ +N   ++C + K G  G+DP+ I  M
Sbjct: 241 NVPICVTLTKIGNQFVIDTTLQEELCMNARLTVGVNSLANICSIQKGGIDGLDPTTINQM 300

[Close]

BLAST of Tan0020096.1 vs. ExPASy Swiss-Prot
Match: O26778 (Exosome complex component Rrp42 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) OX=187420 GN=rrp42 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.7e-34
Identity = 86/257 (33.46%), Postives = 133/257 (51.75%), Query Frame = 0


Query: 21  RTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAELGRPNALQPDKGKVSIS 80
           R DGR    +R IS+ET VIS+A GS+RV++G T++I  VK ++G P    P+ G +  +
Sbjct: 25  RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPFPDTPEMGVILTN 84

Query: 81  VDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGAGIDLSSLIVVEGKLCWDLYI 140
            +  P+A P FE    +E S ELS  ++RC+   +      IDL  L ++EG   W L++
Sbjct: 85  SELLPMASPTFEPGPPDERSVELSRVVDRCIRESRM-----IDLEKLCIIEGSKVWMLFL 144

Query: 141 EGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASANEQPEVDISDEEFLQFDTSGV 200
           +  ++  DGNL DA   A  AAL +T IP   V       E  EV I+ E+      +  
Sbjct: 145 DLHIIDYDGNLFDAAVLATVAALLDTRIPAAEV-------EDGEVVINREKMQPLPVNRK 204

Query: 201 PAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVCGLTKRGGAGVDPSIILDMIS 260
             + T  K+G   V+D +LEEE  +++  SI +   G +C + K G   +    +L  +S
Sbjct: 205 ALMCTFAKIGNEIVLDPSLEEEDILTARISIGVTEEGSICAMQKGGEGPLTRDDVLKAVS 264

Query: 261 VGKHVSEQLLNKLDSEI 278
           +      QL+  LD  +
Sbjct: 265 IAVEKVPQLIEYLDKSM 269

[Close]

BLAST of Tan0020096.1 vs. ExPASy Swiss-Prot
Match: Q8TYC2 (Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) OX=190192 GN=rrp42 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 9.6e-33
Identity = 87/258 (33.72%), Postives = 142/258 (55.04%), Query Frame = 0


Query: 21  RTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAELGRPNALQPDKGKVSIS 80
           R DGR    +RPI V   VIS+ANGSA VR+G T+++  VK E+GRP    P++G ++++
Sbjct: 23  RIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDSPNEGALAVN 82

Query: 81  VDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGAGIDLSSLIVVEGKLCWDLYI 140
            +  P+A+P+FE    +E + ELS  ++R +   +      IDL  L + EG+ CW  ++
Sbjct: 83  AELVPLADPSFEPGPPDENAIELSRVVDRGIRESEM-----IDLEELCIEEGEHCWVTFV 142

Query: 141 EGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASANEQPEVDISDEEFLQFDTSGV 200
           +  V+  DGNL DA      +ALS T +PK  V  +       EV++ +E+      +  
Sbjct: 143 DIHVLDHDGNLFDASMIGSVSALSITEVPKAEVVDD-------EVEVMEEDTEPLAINDF 202

Query: 201 PAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVCGLTKRGGAGVDPSIIL-DMI 260
           P  VT+ KVG + +VD  LEEE  M +  ++++   G VC + K G  G  P  +L D I
Sbjct: 203 PISVTIAKVGEYLLVDPCLEEEVIMDTRLTVTVTESGEVCAVQK-GELGDFPEHLLEDAI 262

Query: 261 SVGKHVSEQLLNKLDSEI 278
            +    +E++   + +++
Sbjct: 263 DLATKKAEEVRRTVKAQL 267

[Close]

BLAST of Tan0020096.1 vs. NCBI nr
Match: XP_023529361.1 (exosome complex component RRP42 [Cucurbita pepo subsp. pepo] >XP_023529362.1 exosome complex component RRP42 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 526.9 bits (1356), Expect = 1.1e-145
Identity = 270/286 (94.41%), Postives = 279/286 (97.55%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M GLS GEKLFIQGGIAQDLRTDGR+RLTYRPISVETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MKGLSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGA 120
           KAELGRPNA+QPDKGKVSI VDCSP AEP FEGRGGEEL+TELSVALERCLLGGKSGAGA
Sbjct: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASAN 180
           GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKV+V+AEASAN
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASAN 180

Query: 181 EQPEVDISDEEFLQFDTSGVPAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVC 240
           EQPEVD+SDEEFLQFDTSGVP IVTLTKVGRHY+VDATLEEESQMSSA SIS+NRHGHVC
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 240

Query: 241 GLTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           GLTKRGGAGVDPS+ILDMISVGKHVSEQLLNKLDSEIAAAEADEEE
Sbjct: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]

BLAST of Tan0020096.1 vs. NCBI nr
Match: XP_022927940.1 (exosome complex component RRP42 [Cucurbita moschata] >XP_022927941.1 exosome complex component RRP42 [Cucurbita moschata])

HSP 1 Score: 525.4 bits (1352), Expect = 3.1e-145
Identity = 269/286 (94.06%), Postives = 278/286 (97.20%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M GLS GEKLFIQGGIAQDLRTDGR+RLTYRPISVETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MKGLSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGA 120
           KAELGRPNA+QPDKGKVSI VDCSP AEP FEGRGGEEL+TELSVALERCLLGGKSGAGA
Sbjct: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASAN 180
           GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKV+V+ EASAN
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSVEASAN 180

Query: 181 EQPEVDISDEEFLQFDTSGVPAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVC 240
           EQPEVD+SDEEFLQFDTSGVP IVTLTKVGRHY+VDATLEEESQMSSA SIS+NRHGHVC
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 240

Query: 241 GLTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           GLTKRGGAGVDPS+ILDMISVGKHVSEQLLNKLDSEIAAAEADEEE
Sbjct: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]

BLAST of Tan0020096.1 vs. NCBI nr
Match: KAG6588778.1 (Exosome complex component RRP42, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 525.0 bits (1351), Expect = 4.0e-145
Identity = 269/286 (94.06%), Postives = 278/286 (97.20%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M GLS GEKLFIQGGIAQDLRTDGR+RL YRPISVETDVISQANGSARVRMGGTEVIATV
Sbjct: 80  MKGLSVGEKLFIQGGIAQDLRTDGRRRLNYRPISVETDVISQANGSARVRMGGTEVIATV 139

Query: 61  KAELGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGA 120
           KAELGRPNA+QPDKGKVSI VDCSP AEP FEGRGGEEL+TELSVALERCLLGGKSGAGA
Sbjct: 140 KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 199

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASAN 180
           GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKV+V+AEASAN
Sbjct: 200 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASAN 259

Query: 181 EQPEVDISDEEFLQFDTSGVPAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVC 240
           EQPEVD+SDEEFLQFDTSGVP IVTLTKVGRHY+VDATLEEESQMSSA SIS+NRHGHVC
Sbjct: 260 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 319

Query: 241 GLTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           GLTKRGGAGVDPS+ILDMISVGKHVSEQLLNKLDSEIAAAEADEEE
Sbjct: 320 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 365

[Close]

BLAST of Tan0020096.1 vs. NCBI nr
Match: XP_022988876.1 (exosome complex component RRP42 [Cucurbita maxima] >XP_022988877.1 exosome complex component RRP42 [Cucurbita maxima])

HSP 1 Score: 521.2 bits (1341), Expect = 5.8e-144
Identity = 267/286 (93.36%), Postives = 278/286 (97.20%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M GLS GEKLFI+GGIAQDLRTDGR+RLTYRPISVETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MKGLSVGEKLFIEGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGA 120
           KAELGRPNA+QPDKGKVSI VDCSP AEP FEGRGGEEL+TELSV+LERCLLGGKSGAGA
Sbjct: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVSLERCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASAN 180
           GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKV+V+AEASAN
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASAN 180

Query: 181 EQPEVDISDEEFLQFDTSGVPAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVC 240
           EQPEVD+SDEEFLQFDTSGVP IVTLTKVGRHY+VDATLEEESQMSSA SIS+NRH HVC
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHCHVC 240

Query: 241 GLTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           GLTKRGGAGVDPS+ILDMISVGKHVSEQLLNKLDSEIAAAEADEEE
Sbjct: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]

BLAST of Tan0020096.1 vs. NCBI nr
Match: XP_004151651.2 (exosome complex component RRP42 [Cucumis sativus] >XP_011656293.1 exosome complex component RRP42 [Cucumis sativus] >XP_011656329.1 exosome complex component RRP42 [Cucumis sativus] >XP_031737840.1 exosome complex component RRP42 [Cucumis sativus] >KGN63566.1 hypothetical protein Csa_013213 [Cucumis sativus])

HSP 1 Score: 520.4 bits (1339), Expect = 9.9e-144
Identity = 266/286 (93.01%), Postives = 277/286 (96.85%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           MVGLSTGEKLFIQ GIAQDLRTDGR RLTYRPIS+ETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGA 120
           KAELGRPN +QPDKGKVSISVDCSP AEPAFEGRGGEELSTELS+ALERCLLGGKSG+GA
Sbjct: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASAN 180
           GIDLSSLIVVEGKLCWDLYIEGLVVSS+GNLLDALGAAIKAALSNTGIPKVHVAAEA  N
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180

Query: 181 EQPEVDISDEEFLQFDTSGVPAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVC 240
           EQPEVD+SDEEFLQFDTSGVPAIVTLTKVG+HY+VDATLEEESQMSSA SISI+RHGH+C
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240

Query: 241 GLTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           GLTKRGG GVDPSIILDMISVGKHVSE+LLNKLDSEI AAEADEEE
Sbjct: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 286

[Close]

BLAST of Tan0020096.1 vs. ExPASy TrEMBL
Match: A0A6J1EQ99 (exosome complex component RRP42 OS=Cucurbita moschata OX=3662 GN=LOC111434693 PE=4 SV=1)

HSP 1 Score: 525.4 bits (1352), Expect = 1.5e-145
Identity = 269/286 (94.06%), Postives = 278/286 (97.20%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M GLS GEKLFIQGGIAQDLRTDGR+RLTYRPISVETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MKGLSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGA 120
           KAELGRPNA+QPDKGKVSI VDCSP AEP FEGRGGEEL+TELSVALERCLLGGKSGAGA
Sbjct: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASAN 180
           GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKV+V+ EASAN
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSVEASAN 180

Query: 181 EQPEVDISDEEFLQFDTSGVPAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVC 240
           EQPEVD+SDEEFLQFDTSGVP IVTLTKVGRHY+VDATLEEESQMSSA SIS+NRHGHVC
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 240

Query: 241 GLTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           GLTKRGGAGVDPS+ILDMISVGKHVSEQLLNKLDSEIAAAEADEEE
Sbjct: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]

BLAST of Tan0020096.1 vs. ExPASy TrEMBL
Match: A0A6J1JIH0 (exosome complex component RRP42 OS=Cucurbita maxima OX=3661 GN=LOC111486098 PE=4 SV=1)

HSP 1 Score: 521.2 bits (1341), Expect = 2.8e-144
Identity = 267/286 (93.36%), Postives = 278/286 (97.20%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M GLS GEKLFI+GGIAQDLRTDGR+RLTYRPISVETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MKGLSVGEKLFIEGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGA 120
           KAELGRPNA+QPDKGKVSI VDCSP AEP FEGRGGEEL+TELSV+LERCLLGGKSGAGA
Sbjct: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVSLERCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASAN 180
           GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKV+V+AEASAN
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASAN 180

Query: 181 EQPEVDISDEEFLQFDTSGVPAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVC 240
           EQPEVD+SDEEFLQFDTSGVP IVTLTKVGRHY+VDATLEEESQMSSA SIS+NRH HVC
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHCHVC 240

Query: 241 GLTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           GLTKRGGAGVDPS+ILDMISVGKHVSEQLLNKLDSEIAAAEADEEE
Sbjct: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]

BLAST of Tan0020096.1 vs. ExPASy TrEMBL
Match: A0A0A0LU91 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004330 PE=4 SV=1)

HSP 1 Score: 520.4 bits (1339), Expect = 4.8e-144
Identity = 266/286 (93.01%), Postives = 277/286 (96.85%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           MVGLSTGEKLFIQ GIAQDLRTDGR RLTYRPIS+ETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGA 120
           KAELGRPN +QPDKGKVSISVDCSP AEPAFEGRGGEELSTELS+ALERCLLGGKSG+GA
Sbjct: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASAN 180
           GIDLSSLIVVEGKLCWDLYIEGLVVSS+GNLLDALGAAIKAALSNTGIPKVHVAAEA  N
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180

Query: 181 EQPEVDISDEEFLQFDTSGVPAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVC 240
           EQPEVD+SDEEFLQFDTSGVPAIVTLTKVG+HY+VDATLEEESQMSSA SISI+RHGH+C
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240

Query: 241 GLTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           GLTKRGG GVDPSIILDMISVGKHVSE+LLNKLDSEI AAEADEEE
Sbjct: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 286

[Close]

BLAST of Tan0020096.1 vs. ExPASy TrEMBL
Match: A0A6J1C1R4 (exosome complex component RRP42 OS=Momordica charantia OX=3673 GN=LOC111007665 PE=4 SV=1)

HSP 1 Score: 518.8 bits (1335), Expect = 1.4e-143
Identity = 266/286 (93.01%), Postives = 279/286 (97.55%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           MVGLS GEK FIQGGIAQDLR+DGR RLTYRPISVETDVISQANGSARV+MGGTEVIA V
Sbjct: 1   MVGLSIGEKQFIQGGIAQDLRSDGRTRLTYRPISVETDVISQANGSARVKMGGTEVIAAV 60

Query: 61  KAELGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGA 120
           KAELGRPNA+QPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVAL+RCLLGGKSGAGA
Sbjct: 61  KAELGRPNAMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALQRCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASAN 180
           GIDLSSLIVVEGK+CWDLYIEGLVVSS+GNLLD LGAAIKAALSNTGIPKV+VAAEASA+
Sbjct: 121 GIDLSSLIVVEGKICWDLYIEGLVVSSNGNLLDTLGAAIKAALSNTGIPKVNVAAEASAD 180

Query: 181 EQPEVDISDEEFLQFDTSGVPAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVC 240
           +QPEVDISDEEFLQFDTSGVP IVTLTKVGRHY+VDATLEEESQM+SA SISINRHGH+C
Sbjct: 181 DQPEVDISDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMNSAISISINRHGHIC 240

Query: 241 GLTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           G+TKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE
Sbjct: 241 GVTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]

BLAST of Tan0020096.1 vs. ExPASy TrEMBL
Match: A0A1S3B3T5 (exosome complex component RRP42-like OS=Cucumis melo OX=3656 GN=LOC103485450 PE=4 SV=1)

HSP 1 Score: 514.2 bits (1323), Expect = 3.4e-142
Identity = 261/286 (91.26%), Postives = 277/286 (96.85%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           MVGLSTGEKLFIQ GIAQDLRTDGR RLTYRPIS+ETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGA 120
           KAELGRPN +Q +KGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSG+GA
Sbjct: 61  KAELGRPNPMQSNKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASAN 180
           GIDLSSLIVVEGKLCWDLYIEGLV+SS+GNLLDALGAAIKAALSNTGIPKVH+AAEAS N
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHIAAEASGN 180

Query: 181 EQPEVDISDEEFLQFDTSGVPAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVC 240
           EQPEVD+SDEEF+QF+TSGVPAIVTLTKVG+HY++DATLEEESQMSSA SISINRHGH+C
Sbjct: 181 EQPEVDVSDEEFIQFETSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHGHIC 240

Query: 241 GLTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           GLTKRGG GVDPSIILDMISVGK+VSE+LLNKLDSEI AAE DEEE
Sbjct: 241 GLTKRGGVGVDPSIILDMISVGKNVSEELLNKLDSEIVAAEVDEEE 286

[Close]

BLAST of Tan0020096.1 vs. TAIR 10
Match: AT3G07750.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 448.7 bits (1153), Expect = 3.4e-126
Identity = 222/285 (77.89%), Postives = 262/285 (91.93%), Query Frame = 0


Query: 2   VGLSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATVK 61
           +GLS GE+ FI+GGIAQDLRTDGRKRLTYRPI VET VI QANGSARVR+GGT+VIA+VK
Sbjct: 1   MGLSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVK 60

Query: 62  AELGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGAG 121
           AE+GRP++LQPDKGKV++ +DCSP AEP F GRGGEELS+EL++AL+RCLLGGKSGAGAG
Sbjct: 61  AEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAG 120

Query: 122 IDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASANE 181
           I+LSSL++ EGK+CWDLYI+GLV+SSDGNLLDALGAAIKAAL+NT IPKV+V+AE + +E
Sbjct: 121 INLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDE 180

Query: 182 QPEVDISDEEFLQFDTSGVPAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVCG 241
           QPE+DISDEE+LQFDTS VP IVTLTKVG HY+VDAT EEESQMSSA SIS+NR GH+CG
Sbjct: 181 QPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICG 240

Query: 242 LTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           LTKR G+G+DPS+ILDMISV KHV+E L++KLDSEI+AAEA E+E
Sbjct: 241 LTKRSGSGLDPSVILDMISVAKHVTETLMSKLDSEISAAEACEDE 285

[Close]

BLAST of Tan0020096.1 vs. TAIR 10
Match: AT3G07750.2 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 448.7 bits (1153), Expect = 3.4e-126
Identity = 222/285 (77.89%), Postives = 262/285 (91.93%), Query Frame = 0


Query: 2   VGLSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATVK 61
           +GLS GE+ FI+GGIAQDLRTDGRKRLTYRPI VET VI QANGSARVR+GGT+VIA+VK
Sbjct: 1   MGLSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVK 60

Query: 62  AELGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGAG 121
           AE+GRP++LQPDKGKV++ +DCSP AEP F GRGGEELS+EL++AL+RCLLGGKSGAGAG
Sbjct: 61  AEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAG 120

Query: 122 IDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASANE 181
           I+LSSL++ EGK+CWDLYI+GLV+SSDGNLLDALGAAIKAAL+NT IPKV+V+AE + +E
Sbjct: 121 INLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDE 180

Query: 182 QPEVDISDEEFLQFDTSGVPAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVCG 241
           QPE+DISDEE+LQFDTS VP IVTLTKVG HY+VDAT EEESQMSSA SIS+NR GH+CG
Sbjct: 181 QPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICG 240

Query: 242 LTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           LTKR G+G+DPS+ILDMISV KHV+E L++KLDSEI+AAEA E+E
Sbjct: 241 LTKRSGSGLDPSVILDMISVAKHVTETLMSKLDSEISAAEACEDE 285

[Close]

BLAST of Tan0020096.1 vs. TAIR 10
Match: AT3G12990.1 (ribonuclease PH45A )

HSP 1 Score: 117.1 bits (292), Expect = 2.3e-26
Identity = 80/258 (31.01%), Postives = 131/258 (50.78%), Query Frame = 0


Query: 4   LSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAE 63
           L+  E  F++  +  +LR DGR    YR ++++     +  GS++V++G T V+A V A+
Sbjct: 11  LTVNESKFVESALQSELRVDGRGLYDYRKLTIK---FGKEYGSSQVQLGQTHVMAFVTAQ 70

Query: 64  LGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGAGID 123
           L +P   +P +G  SI  + SP+A+P+FE     E + EL   ++R L   ++     +D
Sbjct: 71  LVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRA-----VD 130

Query: 124 LSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASAN--- 183
             SL V+ GKL W + I+  ++ + GNL+DA   A  AAL     P   V  + S +   
Sbjct: 131 TESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVII 190

Query: 184 EQPEVDISDEEFLQFDTSGVPAIVT--LTKVGRHYVVDATLEEESQMSSAFSISINRHGH 243
             PE    + E L      +P   T      G   V+D T  EE+ M    ++++N +G 
Sbjct: 191 HPPE----EREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGD 250

Query: 244 VCGLTKRGGAGVDPSIIL 257
           +C + K G  GV+ S+IL
Sbjct: 251 ICAIQKPGEEGVNQSVIL 256

[Close]

BLAST of Tan0020096.1 vs. TAIR 10
Match: AT3G12990.2 (ribonuclease PH45A )

HSP 1 Score: 117.1 bits (292), Expect = 2.3e-26
Identity = 80/258 (31.01%), Postives = 131/258 (50.78%), Query Frame = 0


Query: 4   LSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAE 63
           L+  E  F++  +  +LR DGR    YR ++++     +  GS++V++G T V+A V A+
Sbjct: 11  LTVNESKFVESALQSELRVDGRGLYDYRKLTIK---FGKEYGSSQVQLGQTHVMAFVTAQ 70

Query: 64  LGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGAGID 123
           L +P   +P +G  SI  + SP+A+P+FE     E + EL   ++R L   ++     +D
Sbjct: 71  LVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRA-----VD 130

Query: 124 LSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASAN--- 183
             SL V+ GKL W + I+  ++ + GNL+DA   A  AAL     P   V  + S +   
Sbjct: 131 TESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVII 190

Query: 184 EQPEVDISDEEFLQFDTSGVPAIVT--LTKVGRHYVVDATLEEESQMSSAFSISINRHGH 243
             PE    + E L      +P   T      G   V+D T  EE+ M    ++++N +G 
Sbjct: 191 HPPE----EREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGD 250

Query: 244 VCGLTKRGGAGVDPSIIL 257
           +C + K G  GV+ S+IL
Sbjct: 251 ICAIQKPGEEGVNQSVIL 256

[Close]

BLAST of Tan0020096.1 vs. TAIR 10
Match: AT3G12990.3 (ribonuclease PH45A )

HSP 1 Score: 117.1 bits (292), Expect = 2.3e-26
Identity = 80/258 (31.01%), Postives = 131/258 (50.78%), Query Frame = 0


Query: 4   LSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAE 63
           L+  E  F++  +  +LR DGR    YR ++++     +  GS++V++G T V+A V A+
Sbjct: 11  LTVNESKFVESALQSELRVDGRGLYDYRKLTIK---FGKEYGSSQVQLGQTHVMAFVTAQ 70

Query: 64  LGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGAGID 123
           L +P   +P +G  SI  + SP+A+P+FE     E + EL   ++R L   ++     +D
Sbjct: 71  LVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRA-----VD 130

Query: 124 LSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASAN--- 183
             SL V+ GKL W + I+  ++ + GNL+DA   A  AAL     P   V  + S +   
Sbjct: 131 TESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVII 190

Query: 184 EQPEVDISDEEFLQFDTSGVPAIVT--LTKVGRHYVVDATLEEESQMSSAFSISINRHGH 243
             PE    + E L      +P   T      G   V+D T  EE+ M    ++++N +G 
Sbjct: 191 HPPE----EREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGD 250

Query: 244 VCGLTKRGGAGVDPSIIL 257
           +C + K G  GV+ S+IL
Sbjct: 251 ICAIQKPGEEGVNQSVIL 256

The following BLAST results are available for this feature:

BLAST of Tan0020096.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q15024	1.6e-51	39.86	Exosome complex component RRP42 OS=Homo sapiens OX=9606 GN=EXOSC7 PE=1 SV=3	[more]
Q9D0M0	3.9e-50	39.86	Exosome complex exonuclease RRP42 OS=Mus musculus OX=10090 GN=Exosc7 PE=1 SV=2	[more]
Q54VM4	4.2e-44	36.05	Putative exosome complex exonuclease RRP42 OS=Dictyostelium discoideum OX=44689 ...	[more]
O26778	8.7e-34	33.46	Exosome complex component Rrp42 OS=Methanothermobacter thermautotrophicus (strai...	[more]
Q8TYC2	9.6e-33	33.72	Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324...	[more]

BLAST of Tan0020096.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023529361.1	1.1e-145	94.41	exosome complex component RRP42 [Cucurbita pepo subsp. pepo] >XP_023529362.1 exo...	[more]
XP_022927940.1	3.1e-145	94.06	exosome complex component RRP42 [Cucurbita moschata] >XP_022927941.1 exosome com...	[more]
KAG6588778.1	4.0e-145	94.06	Exosome complex component RRP42, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022988876.1	5.8e-144	93.36	exosome complex component RRP42 [Cucurbita maxima] >XP_022988877.1 exosome compl...	[more]
XP_004151651.2	9.9e-144	93.01	exosome complex component RRP42 [Cucumis sativus] >XP_011656293.1 exosome comple...	[more]

BLAST of Tan0020096.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EQ99	1.5e-145	94.06	exosome complex component RRP42 OS=Cucurbita moschata OX=3662 GN=LOC111434693 PE...	[more]
A0A6J1JIH0	2.8e-144	93.36	exosome complex component RRP42 OS=Cucurbita maxima OX=3661 GN=LOC111486098 PE=4...	[more]
A0A0A0LU91	4.8e-144	93.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004330 PE=4 SV=1	[more]
A0A6J1C1R4	1.4e-143	93.01	exosome complex component RRP42 OS=Momordica charantia OX=3673 GN=LOC111007665 P...	[more]
A0A1S3B3T5	3.4e-142	91.26	exosome complex component RRP42-like OS=Cucumis melo OX=3656 GN=LOC103485450 PE=...	[more]

BLAST of Tan0020096.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07750.1	3.4e-126	77.89	3'-5'-exoribonuclease family protein	[more]
AT3G07750.2	3.4e-126	77.89	3'-5'-exoribonuclease family protein	[more]
AT3G12990.1	2.3e-26	31.01	ribonuclease PH45A	[more]
AT3G12990.2	2.3e-26	31.01	ribonuclease PH45A	[more]
AT3G12990.3	2.3e-26	31.01	ribonuclease PH45A	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 263..286
None	No IPR available	PANTHER	PTHR11097	EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN	coord: 1..284
None	No IPR available	PANTHER	PTHR11097:SF30	BNAA05G29900D PROTEIN	coord: 1..284
None	No IPR available	CDD	cd11367	RNase_PH_RRP42	coord: 4..275 e-value: 1.35352E-123 score: 351.898
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 3..286 e-value: 1.8E-81 score: 275.7
IPR015847	Exoribonuclease, phosphorolytic domain 2	PFAM	PF03725	RNase_PH_C	coord: 200..263 e-value: 1.1E-8 score: 35.0
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 30..169 e-value: 1.1E-27 score: 97.1
IPR036345	Exoribonuclease, PH domain 2 superfamily	SUPERFAMILY	55666	Ribonuclease PH domain 2-like	coord: 196..281
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 4..223

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0020096	Tan0020096	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0020096.1-exon	Tan0020096.1-exon-LG01:68356769..68357463	exon
Tan0020096.1-exon	Tan0020096.1-exon-LG01:68357873..68357997	exon
Tan0020096.1-exon	Tan0020096.1-exon-LG01:68358100..68358178	exon
Tan0020096.1-exon	Tan0020096.1-exon-LG01:68371190..68371282	exon
Tan0020096.1-exon	Tan0020096.1-exon-LG01:68371427..68371483	exon
Tan0020096.1-exon	Tan0020096.1-exon-LG01:68371576..68371724	exon
Tan0020096.1-exon	Tan0020096.1-exon-LG01:68371878..68372003	exon
Tan0020096.1-exon	Tan0020096.1-exon-LG01:68373278..68373286	exon
Tan0020096.1-exon	Tan0020096.1-exon-LG01:68374532..68374571	exon
Tan0020096.1-exon	Tan0020096.1-exon-LG01:68374937..68375080	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0020096.1-three_prime_utr	Tan0020096.1-three_prime_utr-LG01:68356769..68357082	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0020096.1-cds	Tan0020096.1-cds-LG01:68357083..68357463	CDS
Tan0020096.1-cds	Tan0020096.1-cds-LG01:68357873..68357997	CDS
Tan0020096.1-cds	Tan0020096.1-cds-LG01:68358100..68358178	CDS
Tan0020096.1-cds	Tan0020096.1-cds-LG01:68371190..68371282	CDS
Tan0020096.1-cds	Tan0020096.1-cds-LG01:68371427..68371483	CDS
Tan0020096.1-cds	Tan0020096.1-cds-LG01:68371576..68371701	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0020096.1-five_prime_utr	Tan0020096.1-five_prime_utr-LG01:68371702..68371724	five_prime_UTR
Tan0020096.1-five_prime_utr	Tan0020096.1-five_prime_utr-LG01:68371878..68372003	five_prime_UTR
Tan0020096.1-five_prime_utr	Tan0020096.1-five_prime_utr-LG01:68373278..68373286	five_prime_UTR
Tan0020096.1-five_prime_utr	Tan0020096.1-five_prime_utr-LG01:68374532..68374571	five_prime_UTR
Tan0020096.1-five_prime_utr	Tan0020096.1-five_prime_utr-LG01:68374937..68375080	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0020096.1	Tan0020096.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
biological_process	GO:0000467	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0071028	nuclear mRNA surveillance
biological_process	GO:0071042	nuclear polyadenylation-dependent mRNA catabolic process
biological_process	GO:0071035	nuclear polyadenylation-dependent rRNA catabolic process
biological_process	GO:0071038	nuclear polyadenylation-dependent tRNA catabolic process
biological_process	GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process	GO:0034473	U1 snRNA 3'-end processing
biological_process	GO:0034475	U4 snRNA 3'-end processing
biological_process	GO:0034476	U5 snRNA 3'-end processing
cellular_component	GO:0000177	cytoplasmic exosome (RNase complex)
cellular_component	GO:0000176	nuclear exosome (RNase complex)